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5TKZ
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BU of 5tkz by Molmil
MEC-8 N-terminal RRM bound to tandem GCAC ligand
Descriptor: DNA (5'-D(*AP*GP*CP*AP*CP*AP*TP*TP*TP*TP*TP*TP*TP*TP*AP*GP*CP*AP*CP*A)-3'), Mec-8 protein
Authors:Soufari, H, Mackereth, C.D.
Deposit date:2016-10-10
Release date:2017-01-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.529 Å)
Cite:Conserved binding of GCAC motifs by MEC-8, couch potato, and the RBPMS protein family.
RNA, 23, 2017
5BJR
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BU of 5bjr by Molmil
Crystal structure of the N-terminal RRM domain from MEC-8
Descriptor: AMMONIUM ION, Mec-8 protein
Authors:Soufari, H, Mackereth, C.D.
Deposit date:2016-10-22
Release date:2017-01-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Conserved binding of GCAC motifs by MEC-8, couch potato, and the RBPMS protein family.
RNA, 23, 2017
7A24
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BU of 7a24 by Molmil
Assembly intermediate of the plant mitochondrial complex I
Descriptor: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, 13kDa, 15kDa, ...
Authors:Soufari, H, Waltz, F, Hashem, Y.
Deposit date:2020-08-16
Release date:2020-10-28
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Specific features and assembly of the plant mitochondrial complex I revealed by cryo-EM.
Nat Commun, 11, 2020
7A23
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BU of 7a23 by Molmil
Plant mitochondrial respiratory complex I
Descriptor: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, 13kDa, 15kDa, ...
Authors:Soufari, H, Waltz, F, Hashem, Y.
Deposit date:2020-08-15
Release date:2020-10-28
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Specific features and assembly of the plant mitochondrial complex I revealed by cryo-EM.
Nat Commun, 11, 2020
7AM2
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BU of 7am2 by Molmil
Intermediate assembly of the Large subunit from Leishmania major mitochondrial ribosome
Descriptor: 50S ribosomal protein L13-like protein, ADENOSINE-5'-TRIPHOSPHATE, Acyl carrier protein, ...
Authors:Soufari, H, Waltz, F, Parrot, C, Bochler, A, Hashem, Y.
Deposit date:2020-10-07
Release date:2021-04-28
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structure of the mature kinetoplastids mitoribosome and insights into its large subunit biogenesis.
Proc.Natl.Acad.Sci.USA, 117, 2020
7AOR
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BU of 7aor by Molmil
mt-SSU from Trypanosoma cruzi in complex with mt-IF-3.
Descriptor: 30S Ribosomal protein S17-like protein, AKAP7_NLS domain-containing protein, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Soufari, H, Waltz, F, Parrot, C, Bochler, A, Hashem, Y.
Deposit date:2020-10-15
Release date:2021-04-28
Last modified:2021-06-23
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structure of the mature kinetoplastids mitoribosome and insights into its large subunit biogenesis.
Proc.Natl.Acad.Sci.USA, 117, 2020
7AIH
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BU of 7aih by Molmil
The Large subunit of the Kinetoplastid mitochondrial ribosome
Descriptor: 50S ribosomal protein L13-like protein, C2H2-type domain-containing protein, L51_S25_CI-B8 domain-containing protein, ...
Authors:Soufari, H, Waltz, F, Parrot, C, Bochler, A, Hashem, Y.
Deposit date:2020-09-27
Release date:2021-04-28
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structure of the mature kinetoplastids mitoribosome and insights into its large subunit biogenesis.
Proc.Natl.Acad.Sci.USA, 117, 2020
7ANE
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BU of 7ane by Molmil
Leishmania Major mitochondrial ribosome
Descriptor: 30S Ribosomal protein S17-like protein, 50S ribosomal protein L13-like protein, AKAP7_NLS domain-containing protein, ...
Authors:Soufari, H, Waltz, F, Parrot, C, Bochler, A, Hashem, Y.
Deposit date:2020-10-11
Release date:2021-06-23
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structure of the mature kinetoplastids mitoribosome and insights into its large subunit biogenesis.
Proc.Natl.Acad.Sci.USA, 117, 2020
6XYW
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BU of 6xyw by Molmil
Structure of the plant mitochondrial ribosome
Descriptor: 28S ribosomal S34 protein, 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial, ...
Authors:Soufari, H, Waltz, F, Bochler, A, Giege, P, Hashem, Y.
Deposit date:2020-01-31
Release date:2020-04-15
Last modified:2020-04-29
Method:ELECTRON MICROSCOPY (3.86 Å)
Cite:Cryo-EM structure of the RNA-rich plant mitochondrial ribosome.
Nat.Plants, 6, 2020
6DG0
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BU of 6dg0 by Molmil
MEC-8 C-terminal RRM domain bound to AGCACA
Descriptor: DNA (5'-D(*AP*GP*CP*AP*CP*A)-3'), Mec-8 protein
Authors:Mackereth, C.D, Soufari, H.
Deposit date:2018-05-16
Release date:2019-08-21
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.457 Å)
Cite:Structure of MEC-8 RRM2 in complex with AGCACA
To Be Published
7PKT
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BU of 7pkt by Molmil
Large subunit of the Chlamydomonas reinhardtii mitoribosome
Descriptor: 50S ribosomal protein L20, 50S ribosomal protein L9, chloroplastic, ...
Authors:Waltz, F, Soufari, H, Hashem, Y.
Deposit date:2021-08-26
Release date:2022-06-15
Method:ELECTRON MICROSCOPY (3 Å)
Cite:How to build a ribosome from RNA fragments in Chlamydomonas mitochondria.
Nat Commun, 12, 2021
7PKQ
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BU of 7pkq by Molmil
Small subunit of the Chlamydomonas reinhardtii mitoribosome
Descriptor: 30S ribosomal protein S9, chloroplastic, Mitochondrial ribosomal protein S13, ...
Authors:Waltz, F, Soufari, H, Hashem, Y.
Deposit date:2021-08-26
Release date:2023-06-14
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:The Chlamydomonas mitochondrial ribosome: how to build a ribosome from RNA fragments
To Be Published
7Q4K
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BU of 7q4k by Molmil
Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Fostier, C.R, Ousalem, F, Soufari, H, Leroy, E.C, Ngo, S, Innis, A, Hashem, Y, Boel, G.
Deposit date:2021-10-31
Release date:2022-11-16
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Regulation of the macrolide resistance ABC-F translation factor MsrD.
Nat Commun, 14, 2023
7A01
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BU of 7a01 by Molmil
The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
Descriptor: 18S RIBOSOMAL RNA, 28S RIBOSOMAL RNA, 40S RIBOSOMAL PROTEIN ES21, ...
Authors:Abaeva, I, Vicens, Q, Bochler, A, Soufari, H, Simonetti, A, Pestova, T.V, Hashem, Y, Hellen, C.U.T.
Deposit date:2020-08-05
Release date:2020-12-30
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:The Halastavi arva Virus Intergenic Region IRES Promotes Translation by the Simplest Possible Initiation Mechanism.
Cell Rep, 33, 2020
6ZVK
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BU of 6zvk by Molmil
The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
Descriptor: 18S RIBOSOMAL RNA, 28S RIBOSOMAL RNA, 40S RIBOSOMAL PROTEIN ES17, ...
Authors:Abaeva, I.S, Vicens, Q, Bochler, A, Soufari, H, Simonetti, A, Pestova, T, Hashem, Y, Hellen, C.U.T.
Deposit date:2020-07-24
Release date:2020-12-23
Method:ELECTRON MICROSCOPY (3.49 Å)
Cite:The Halastavi arva Virus Intergenic Region IRES Promotes Translation by the Simplest Possible Initiation Mechanism.
Cell Rep, 33, 2020
7ASK
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BU of 7ask by Molmil
43S preinitiation complex from Trypanosoma cruzi with the kDDX60 helicase bound with ATP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, kDDX60
Authors:Bochler, A, Brito Querido, J, Prilepskaja, T, Soufari, H, Del Cistia, M.L, Kuhn, L, Rimoldi Ribeiro, A, Valasek, L.S, Hashem, Y.
Deposit date:2020-10-27
Release date:2021-04-14
Last modified:2021-04-21
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Structural Differences in Translation Initiation between Pathogenic Trypanosomatids and Their Mammalian Hosts.
Cell Rep, 33, 2020
7ASE
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BU of 7ase by Molmil
43S preinitiation complex from Trypanosoma cruzi with the kDDX60 helicase
Descriptor: 18S, 40S ribosomal protein S10, putative, ...
Authors:Bochler, A, Brito Querido, J, Prilepskaja, T, Soufari, H, Del Cistia, M.L, Kuhn, L, Rimoldi Ribeiro, A, Valasek, L.S, Hashem, Y.
Deposit date:2020-10-27
Release date:2021-04-14
Last modified:2021-04-21
Method:ELECTRON MICROSCOPY (3.33 Å)
Cite:Structural Differences in Translation Initiation between Pathogenic Trypanosomatids and Their Mammalian Hosts.
Cell Rep, 33, 2020
7KWG
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BU of 7kwg by Molmil
Staphylococcus aureus 30S ribosomal subunit in presence of spermidine
Descriptor: 16S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
Authors:Belinite, M, Khusainov, I, Marzi, S, Romby, P, Yusupov, M, Hashem, Y.
Deposit date:2020-11-30
Release date:2021-01-27
Last modified:2021-12-22
Method:ELECTRON MICROSCOPY (3.75 Å)
Cite:Stabilization of Ribosomal RNA of the Small Subunit by Spermidine in Staphylococcus aureus .
Front Mol Biosci, 8, 2021
4BF8
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BU of 4bf8 by Molmil
Fpr4 PPI domain
Descriptor: FPR4
Authors:Monneau, Y, Mackereth, C.
Deposit date:2013-03-15
Release date:2013-07-31
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure and Activity of the Peptidyl-Prolyl Isomerase Domain from the Histone Chaperone Fpr4 Towards Histone H3 Proline Isomerization
J.Biol.Chem., 288, 2013
7SZ2
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BU of 7sz2 by Molmil
Mouse PARP13/ZAP ZnF5-WWE1-WWE2 bound to ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, GLYCEROL, PHOSPHATE ION, ...
Authors:Ayanath Kuttiyatveetil, J.R, Pascal, J.M.
Deposit date:2021-11-25
Release date:2022-10-05
Last modified:2022-11-09
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures and functional analysis of the ZnF5-WWE1-WWE2 region of PARP13/ZAP define a distinctive mode of engaging poly(ADP-ribose).
Cell Rep, 41, 2022
7SZ3
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BU of 7sz3 by Molmil
Mouse PARP13/ZAP ZnF5-WWE1-WWE2 bound to ADPr
Descriptor: ADENOSINE-5-DIPHOSPHORIBOSE, GLYCEROL, PHOSPHATE ION, ...
Authors:Ayanath Kuttiyatveetil, J.R, Pascal, J.M.
Deposit date:2021-11-25
Release date:2022-10-05
Last modified:2022-11-09
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures and functional analysis of the ZnF5-WWE1-WWE2 region of PARP13/ZAP define a distinctive mode of engaging poly(ADP-ribose).
Cell Rep, 41, 2022
7BGE
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BU of 7bge by Molmil
Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (head only)
Descriptor: 16S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S13, ...
Authors:Belinite, M, Khusainov, I, Marzi, S, Romby, P, Yusupov, M, Hashem, Y.
Deposit date:2021-01-06
Release date:2021-12-08
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Stabilization of Ribosomal RNA of the Small Subunit by Spermidine in Staphylococcus aureus
Front Mol Biosci, 8, 2021
7BGD
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BU of 7bgd by Molmil
Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (body only)
Descriptor: 16S ribosomal RNA, 30S ribosomal protein S11, 30S ribosomal protein S12, ...
Authors:Belinite, M, Khusainov, I, Marzi, S, Romby, P, Yusupov, M, Hashem, Y.
Deposit date:2021-01-06
Release date:2021-12-08
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Stabilization of Ribosomal RNA of the Small Subunit by Spermidine in Staphylococcus aureus
Front Mol Biosci, 8, 2021
8BH6
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BU of 8bh6 by Molmil
Mature 30S ribosomal subunit from Staphylococcus aureus
Descriptor: 16S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
Authors:Garaeva, N, Fatkhullin, B, Jenner, L, Soufari, H, Yusupov, M, Usachev, K.
Deposit date:2022-10-30
Release date:2023-09-20
Last modified:2023-11-08
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Ribosome maturation factor P (RimP) from Staphylococcus aureus
Structure, 2023
8BH7
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BU of 8bh7 by Molmil
The complex of immature 30S ribosomal subunit with Ribosome maturation factor P (RimP) from Staphylococcus aureus
Descriptor: 16S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
Authors:Garaeva, N, Fatkhullin, B, Jenner, L, Soufari, H, Yusupov, M, Usachev, K.
Deposit date:2022-10-30
Release date:2023-09-20
Last modified:2023-11-08
Method:ELECTRON MICROSCOPY (4.23 Å)
Cite:Ribosome maturation factor P (RimP) from Staphylococcus aureus
Structure, 2023

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PDB entries from 2024-03-27

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