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4V4O
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BU of 4v4o by Molmil
Crystal Structure of the Chaperonin Complex Cpn60/Cpn10/(ADP)7 from Thermus Thermophilus
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DIMETHYL SULFOXIDE, MAGNESIUM ION, ...
Authors:Shimamura, T, Koike-Takeshita, A, Yokoyama, K, Masui, R, Murai, N, Yoshida, M, Taguchi, H, Iwata, S.
Deposit date:2004-05-23
Release date:2014-07-09
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of the native chaperonin complex from Thermus thermophilus revealed unexpected asymmetry at the cis-cavity
STRUCTURE, 12, 2004
7CKJ
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BU of 7ckj by Molmil
Crystal structure of CMP kinase in complex with CMP from Thermus thermophilus HB8
Descriptor: CYTIDINE-5'-MONOPHOSPHATE, Cytidylate kinase
Authors:Mega, R, Nakagawa, N, Kuramitsu, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2020-07-17
Release date:2020-07-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The crystal structures of Thermus thermophilus CMP kinase complexed with a phosphoryl group acceptor and donor.
PLoS ONE, 15, 2020
5H45
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BU of 5h45 by Molmil
Crystal structure of the C-terminal Lon protease-like domain of Thermus thermophilus RadA/Sms
Descriptor: DNA repair protein RadA
Authors:Inoue, M, Fukui, K, Fujii, Y, Nakagawa, N, Yano, T, Kuramitsu, S, Masui, R.
Deposit date:2016-10-30
Release date:2017-05-03
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The Lon protease-like domain in the bacterial RecA paralog RadA is required for DNA binding and repair.
J. Biol. Chem., 292, 2017
1D2M
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BU of 1d2m by Molmil
UVRB PROTEIN OF THERMUS THERMOPHILUS HB8; A NUCLEOTIDE EXCISION REPAIR ENZYME
Descriptor: EXCINUCLEASE ABC SUBUNIT B, SULFATE ION, octyl beta-D-glucopyranoside
Authors:Nakagawa, N, Sugahara, M, Masui, R, Kato, R, Fukuyama, K, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:1999-09-25
Release date:2000-03-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of Thermus thermophilus HB8 UvrB protein, a key enzyme of nucleotide excision repair.
J.Biochem.(Tokyo), 126, 1999
1ONL
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BU of 1onl by Molmil
Crystal structure of Thermus thermophilus HB8 H-protein of the glycine cleavage system
Descriptor: glycine cleavage system H protein
Authors:Nakai, T, Ishijima, J, Masui, R, Kuramitsu, S, Kamiya, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-02-28
Release date:2003-08-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of Thermus thermophilus HB8 H-protein of the glycine-cleavage system, resolved by a six-dimensional molecular-replacement method.
Acta Crystallogr.,Sect.D, 59, 2003
1IR6
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BU of 1ir6 by Molmil
Crystal structure of exonuclease RecJ bound to manganese
Descriptor: MANGANESE (II) ION, exonuclease RecJ
Authors:Yamagata, A, Kakuta, Y, Masui, R, Fukuyama, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2001-09-11
Release date:2002-05-15
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The crystal structure of exonuclease RecJ bound to Mn2+ ion suggests how its characteristic motifs are involved in exonuclease activity.
Proc.Natl.Acad.Sci.USA, 99, 2002
7ED9
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BU of 7ed9 by Molmil
Crystal structure of selenomethionine-labeled Thermus thermophilus FakA ATP-binding domain
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Probable kinase
Authors:Nakatani, M, Nakahara, S, Fukui, K, Murakawa, T, Masui, R.
Deposit date:2021-03-15
Release date:2022-03-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.01764154 Å)
Cite:Crystal structure of a nucleotide-binding domain of fatty acid kinase FakA from Thermus thermophilus HB8.
J.Struct.Biol., 214, 2022
7ED6
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BU of 7ed6 by Molmil
Crystal structure of Thermus thermophilus FakA ATP-binding domain
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Probable kinase
Authors:Nakatani, M, Nakahara, S, Fukui, K, Murakawa, T, Masui, R.
Deposit date:2021-03-15
Release date:2022-03-16
Last modified:2023-01-11
Method:X-RAY DIFFRACTION (1.92850327 Å)
Cite:Crystal structure of a nucleotide-binding domain of fatty acid kinase FakA from Thermus thermophilus HB8.
J.Struct.Biol., 214, 2022
2GGS
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BU of 2ggs by Molmil
crystal structure of hypothetical dTDP-4-dehydrorhamnose reductase from sulfolobus tokodaii
Descriptor: 273aa long hypothetical dTDP-4-dehydrorhamnose reductase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Rajakannan, V, Mizushima, T, Suzuki, A, Masui, R, Kuramitsu, S, Yamane, T.
Deposit date:2006-03-24
Release date:2007-03-24
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:crystal structure of hypothetical dTDP-4-dehydrorhamnose reductase from sulfolobus tokodaii
To be published
5YTQ
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BU of 5ytq by Molmil
Crystal Structure of TTHA0139 L34A with Lanthanum from Thermus thermophilus HB8
Descriptor: LANTHANUM (III) ION, TTHA0139
Authors:Takao, K, Inoue, M, Fukui, K, Yano, T, Masui, R.
Deposit date:2017-11-19
Release date:2018-11-21
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.393 Å)
Cite:Crystal Structure of TTHA0139 L34A with Lanthanum from Thermus thermophilus HB8
To Be Published
5YTP
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BU of 5ytp by Molmil
Crystal Structure of TTHA0139 L34A from Thermus thermophilus HB8
Descriptor: TTHA0139
Authors:Takao, K, Inoue, M, Fukui, K, Yano, T, Masui, R.
Deposit date:2017-11-19
Release date:2018-11-21
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.457 Å)
Cite:Crystal Structure of TTHA0139 L34A from Thermus thermophilus HB8
To Be Published
1IQU
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BU of 1iqu by Molmil
Crystal structure of photolyase-thymine complex
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, PHOSPHATE ION, THYMINE, ...
Authors:Komori, H, Masui, R, Kuramitsu, S, Yokoyama, S, Shibata, T, Inoue, Y, Miki, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2001-08-03
Release date:2002-05-08
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of thermostable DNA photolyase: pyrimidine-dimer recognition mechanism.
Proc.Natl.Acad.Sci.USA, 98, 2001
1IQR
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BU of 1iqr by Molmil
Crystal structure of DNA photolyase from Thermus thermophilus
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, PHOSPHATE ION, photolyase
Authors:Komori, H, Masui, R, Kuramitsu, S, Yokoyama, S, Shibata, T, Inoue, Y, Miki, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2001-07-27
Release date:2001-11-28
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of thermostable DNA photolyase: pyrimidine-dimer recognition mechanism.
Proc.Natl.Acad.Sci.USA, 98, 2001
2ZIE
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BU of 2zie by Molmil
Crystal Structure of TTHA0409, Putatative DNA Modification Methylase from Thermus thermophilus HB8- Selenomethionine derivative
Descriptor: Putative modification methylase
Authors:Morita, R, Ishikawa, H, Nakagawa, N, Masui, R, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-02-15
Release date:2008-07-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of a putative DNA methylase TTHA0409 from Thermus thermophilus HB8
Proteins, 73, 2008
2ZIG
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BU of 2zig by Molmil
Crystal Structure of TTHA0409, Putative DNA Modification Methylase from Thermus thermophilus HB8
Descriptor: Putative modification methylase
Authors:Morita, R, Ishikawa, H, Nakagawa, N, Masui, R, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-02-15
Release date:2008-07-29
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of a putative DNA methylase TTHA0409 from Thermus thermophilus HB8
Proteins, 73, 2008
2ZIF
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BU of 2zif by Molmil
Crystal Structure of TTHA0409, Putative DNA Modification Methylase from Thermus thermophilus HB8- Complexed with S-Adenosyl-L-Methionine
Descriptor: Putative modification methylase, S-ADENOSYLMETHIONINE
Authors:Morita, R, Ishikawa, H, Nakagawa, N, Masui, R, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-02-15
Release date:2008-07-29
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of a putative DNA methylase TTHA0409 from Thermus thermophilus HB8
Proteins, 73, 2008
3HJE
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BU of 3hje by Molmil
Crystal structure of sulfolobus tokodaii hypothetical maltooligosyl trehalose synthase
Descriptor: 704aa long hypothetical glycosyltransferase, GLYCEROL
Authors:Cielo, C.B.C, Okazaki, S, Suzuki, A, Mizushima, T, Masui, R, Kuramitsu, S, Yamane, T.
Deposit date:2009-05-21
Release date:2010-04-14
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of ST0929, a putative glycosyl transferase from Sulfolobus tokodaii
Acta Crystallogr.,Sect.F, 66, 2010
3IEM
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BU of 3iem by Molmil
Crystal Structure of TTHA0252 from Thermus thermophilus HB8 complexed with RNA analog
Descriptor: CITRATE ANION, RNA (5'-R(*(SSU)P*(SSU)P*(SSU)P*(SSU)P*(SSU)P*(SSU))-3'), Ribonuclease TTHA0252, ...
Authors:Ishikawa, H, Nakagawa, N, Kuramitus, S, Yokoyama, S, Masui, R.
Deposit date:2009-07-23
Release date:2010-07-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of TTHA0252 from Thermus thermophilus HB8 complexed with RNA analog
To be Published
3IEK
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BU of 3iek by Molmil
Crystal Structure of native TTHA0252 from Thermus thermophilus HB8
Descriptor: CITRATE ANION, Ribonuclease TTHA0252, SULFATE ION, ...
Authors:Ishikawa, H, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R.
Deposit date:2009-07-22
Release date:2010-07-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal Structure of native TTHA0252 from Thermus thermophilus HB8
To be Published
3IEL
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BU of 3iel by Molmil
Crystal Structure of TTHA0252 from Thermus thermophilus HB8 complexed with UMP
Descriptor: CITRATE ANION, Ribonuclease TTHA0252, SULFATE ION, ...
Authors:Ishikawa, H, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R.
Deposit date:2009-07-23
Release date:2010-07-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Crystal Structure of TTHA0252 from Thermus thermophilus HB8 complexed with UMP
To be Published
3IE1
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BU of 3ie1 by Molmil
Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA
Descriptor: CITRATE ANION, RNA (5'-R(P*UP*UP*UP*U)-3'), Ribonuclease TTHA0252, ...
Authors:Ishikawa, H, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-07-22
Release date:2009-08-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA
To be Published
3IE2
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BU of 3ie2 by Molmil
Crystal Structure of H400V mutant TTHA0252 from Thermus thermophilus HB8
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Ribonuclease TTHA0252, SULFATE ION, ...
Authors:Ishikawa, H, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-07-22
Release date:2009-08-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of H400V mutant TTHA0252 from Thermus thermophilus HB8
To be Published
3IDZ
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BU of 3idz by Molmil
Crystal Structure of S378Q mutant TTHA0252 from Thermus thermophilus HB8
Descriptor: CITRATE ANION, Ribonuclease TTHA0252, SULFATE ION, ...
Authors:Ishikawa, H, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-07-22
Release date:2009-08-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of S378Q mutant TTHA0252 from Thermus thermophilus HB8
To be Published
3IE0
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BU of 3ie0 by Molmil
Crystal Structure of S378Y mutant TTHA0252 from Thermus thermophilus HB8
Descriptor: CITRATE ANION, Ribonuclease TTHA0252, SULFATE ION, ...
Authors:Ishikawa, H, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-07-22
Release date:2009-08-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.73 Å)
Cite:Crystal Structure of S378Y mutant TTHA0252 from Thermus thermophilus HB8
To be Published
3W8N
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BU of 3w8n by Molmil
Open form structure of CMP kinase in complex with CMP from Thermus thermophilus HB8
Descriptor: CYTIDINE-5'-MONOPHOSPHATE, Cytidylate kinase
Authors:Nakagawa, N, Mega, R, Masui, R, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2013-03-19
Release date:2013-09-25
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of CMP kinase: insights into initial substrate recognition and reaction mechanisms
To be Published

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