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1WRJ
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BU of 1wrj by Molmil
Crystal structure of O6-methylguanine methyltransferase from Sulfolobus tokodaii
Descriptor: Methylated-DNA--protein-cysteine methyltransferase
Authors:Kuroda, M, Tsunoda, M, Nakamura, K.T.
Deposit date:2004-10-18
Release date:2005-12-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of O6-methylguanine methyltransferase from Sulfolobus tokodaii
To be Published
7CIO
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BU of 7cio by Molmil
Molecular interactions of cytoplasmic region of CTLA-4 with SH2 domains of PI3-kinase
Descriptor: Cytotoxic T-lymphocyte protein 4, Phosphatidylinositol 3-kinase regulatory subunit alpha
Authors:Iiyama, M, Numoto, N, Ogawa, S, Kuroda, M, Morii, H, Abe, R, Ito, N, Oda, M.
Deposit date:2020-07-08
Release date:2020-12-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Molecular interactions of the CTLA-4 cytoplasmic region with the phosphoinositide 3-kinase SH2 domains.
Mol.Immunol., 131, 2021
3IS1
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BU of 3is1 by Molmil
Crystal structure of functional region of UafA from Staphylococcus saprophyticus in C2 form at 2.45 angstrom resolution
Descriptor: GLYCEROL, Uro-adherence factor A
Authors:Tanaka, Y, Matsuoka, E, Shouji, Y, Kuroda, M, Tanaka, I, Yao, M.
Deposit date:2009-08-24
Release date:2010-09-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Crystal structure of the functional region of Uro-adherence factor A from Staphylococcus saprophyticus reveals participation of the B domain in ligand binding
Protein Sci., 20, 2011
3IS0
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BU of 3is0 by Molmil
Crystal structure of functional region of UafA from Staphylococcus saprophyticus in the presence of cholesterol
Descriptor: GLYCEROL, Uro-adherence factor A
Authors:Tanaka, Y, Shouji, Y, Matsuoka, E, Kuroda, M, Tanaka, I, Yao, M.
Deposit date:2009-08-24
Release date:2010-09-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal Structure of Functional Region of UafA from Staphylococcus saprophyticus
To be Published
3IRP
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BU of 3irp by Molmil
Crystal structure of functional region of UafA from Staphylococcus saprophyticus at 1.50 angstrom resolution
Descriptor: GLYCEROL, POTASSIUM ION, Uro-adherence factor A
Authors:Tanaka, Y, Shouji, Y, Matsuoka, E, Kuroda, M, Tanaka, I, Yao, M.
Deposit date:2009-08-24
Release date:2010-09-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of the functional region of Uro-adherence factor A from Staphylococcus saprophyticus reveals participation of the B domain in ligand binding
Protein Sci., 20, 2011
3IRZ
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BU of 3irz by Molmil
Crystal structure of functional region of UafA from Staphylococcus saprophyticus in P212121 form
Descriptor: GLYCEROL, Uro-adherence factor A
Authors:Tanaka, Y, Shouji, Y, Matsuoka, E, Kuroda, M, Tanaka, I, Yao, M.
Deposit date:2009-08-24
Release date:2010-09-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of the functional region of Uro-adherence factor A from Staphylococcus saprophyticus reveals participation of the B domain in ligand binding
Protein Sci., 20, 2011
2DGJ
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BU of 2dgj by Molmil
Crystal structure of EbhA (756-1003 domain) from Staphylococcus aureus
Descriptor: ACETIC ACID, GLYCEROL, SULFATE ION, ...
Authors:Tanaka, Y, Yao, M, Kuroda, M, Watanabe, N, Ohta, T, Tanaka, I.
Deposit date:2006-03-14
Release date:2007-03-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:A helical string of alternately connected three-helix bundles for the cell wall-associated adhesion protein Ebh from Staphylococcus aureus
Structure, 16, 2008
3ST7
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BU of 3st7 by Molmil
Crystal Structure of capsular polysaccharide assembling protein CapF from staphylococcus aureus
Descriptor: Capsular polysaccharide synthesis enzyme Cap5F, GLYCEROL, ZINC ION
Authors:Miyafusa, T, Tanaka, Y, Kuroda, M, Yao, M, Watanabe, M, Ohta, T, Tanaka, I, Caaveiro, J.M.M, Tsumoto, K.
Deposit date:2011-07-09
Release date:2012-02-15
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Crystal structure of the enzyme CapF of Staphylococcus aureus reveals a unique architecture composed of two functional domains.
Biochem.J., 443, 2012
8D0Z
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BU of 8d0z by Molmil
S728-1157 IgG in complex with SARS-CoV-2-6P-Mut7 Spike protein (focused refinement)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, S728-1157 Fab heavy chain variable region, S728-1157 Fab light chain variable region, ...
Authors:Ozorowski, G, Torres, J.L, Ward, A.B.
Deposit date:2022-05-26
Release date:2023-03-22
Last modified:2023-05-03
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Site of vulnerability on SARS-CoV-2 spike induces broadly protective antibody against antigenically distinct Omicron subvariants.
J.Clin.Invest., 133, 2023
7E5O
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BU of 7e5o by Molmil
Crystal structure of SARS-CoV-2 RBD in complex with antibody NT-193
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, NT-193 Heavy chain, NT-193 Light chain, ...
Authors:Kita, S, Onodera, T, Adachi, Y, Moriayma, S, Nomura, T, Tadokoro, T, Anraku, Y, Yumoto, K, Tian, C, Fukuhara, H, Suzuki, T, Tonouchi, K, Sasaki, J, Sun, L, Hashiguchi, T, Takahashi, Y, Maenaka, K.
Deposit date:2021-02-19
Release date:2021-09-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A SARS-CoV-2 antibody broadly neutralizes SARS-related coronaviruses and variants by coordinated recognition of a virus-vulnerable site.
Immunity, 54, 2021
2Z6F
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BU of 2z6f by Molmil
Crystal structure of NEAT domain from Staphylococcus aureus in complex with heme
Descriptor: Iron-regulated surface determinant protein H, PROTOPORPHYRIN IX CONTAINING FE
Authors:Tanaka, Y, Suenaga, A, Tsumoto, K.
Deposit date:2007-07-31
Release date:2008-07-29
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for multimeric heme complexation through a specific protein-heme interaction: the case of the third neat domain of IsdH from Staphylococcus aureus
J.Biol.Chem., 283, 2008
2ZKL
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BU of 2zkl by Molmil
Crystal Structure of capsular polysaccharide assembling protein CapF from staphylococcus aureus
Descriptor: Capsular polysaccharide synthesis enzyme Cap5F, GLYCEROL, ZINC ION
Authors:Miyafusa, T, Tanaka, Y, Yao, M, Tanaka, I, Tsumoto, K.
Deposit date:2008-03-25
Release date:2009-03-31
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Crystal structure of capsular polysaccharide assembling protein from Staphylococcus aureus
to be published
2E7D
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BU of 2e7d by Molmil
Crystal structure of a NEAT domain from Staphylococcus aureus
Descriptor: ACETATE ION, GLYCEROL, Hypothetical protein IsdH, ...
Authors:Suenaga, A, Tanaka, Y, Yao, M, Kumagai, I, Tanaka, I, Tsumoto, K.
Deposit date:2007-01-09
Release date:2008-01-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for multimeric heme complexation through a specific protein-heme interaction: the case of the third neat domain of IsdH from Staphylococcus aureus
J.Biol.Chem., 283, 2008
3QUG
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BU of 3qug by Molmil
Structure of heme transport protein IsdH-NEAT3 from S. aureus in complex with Gallium-porphyrin
Descriptor: GLYCEROL, Iron-regulated surface determinant protein H, PROTOPORPHYRIN IX CONTAINING GA, ...
Authors:Moriwaki, Y, Caaveiro, J.M.M, Tsumoto, K.
Deposit date:2011-02-24
Release date:2011-03-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Molecular basis of recognition of antibacterial porphyrins by heme-transporter IsdH-NEAT3 of Staphylococcus aureus.
Biochemistry, 50, 2011
3QUH
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BU of 3quh by Molmil
Structure of heme transport protein IsdH-NEAT3 from S. aureus in complex with Manganese(III)-porphyrin
Descriptor: GLYCEROL, Iron-regulated surface determinant protein H, PROTOPORPHYRIN IX CONTAINING MN
Authors:Moriwaki, Y, Caaveiro, J.M.M, Tsumoto, K.
Deposit date:2011-02-24
Release date:2011-03-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Molecular basis of recognition of antibacterial porphyrins by heme-transporter IsdH-NEAT3 of Staphylococcus aureus.
Biochemistry, 50, 2011
1WV3
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BU of 1wv3 by Molmil
Crystal structure of N-terminal domain of hypothetical protein SAV0287 from Staphylococcus aureus
Descriptor: CHLORIDE ION, similar to DNA segregation ATPase and related proteins
Authors:Tanaka, Y, Yasutake, Y, Tanaka, I.
Deposit date:2004-12-10
Release date:2005-12-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure analysis reveals a novel forkhead-associated domain of ESAT-6 secretion system C protein in Staphylococcus aureus.
Proteins, 69, 2007
3VUA
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BU of 3vua by Molmil
Apo IsdH-NEAT3 in space group P3121 at a resolution of 1.85 A
Descriptor: ACETATE ION, GLYCEROL, Iron-regulated surface determinant protein H, ...
Authors:Vu, N.T, Caaveiro, J.M.M, Moriwaki, Y, Tsumoto, K.
Deposit date:2012-06-26
Release date:2013-06-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure of heme transport protein IsdH-NEAT3 from S. aureus in complex with Indium-porphyrin
To be Published
3VTM
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BU of 3vtm by Molmil
Structure of heme transport protein IsdH-NEAT3 from S. aureus in complex with Indium-porphyrin
Descriptor: GLYCEROL, Iron-regulated surface determinant protein H, PROTOPORPHYRIN IX CONTAINING INDIUM
Authors:Vu, N.T, Caaveiro, J.M.M, Moriwaki, Y, Tsumoto, K.
Deposit date:2012-05-31
Release date:2013-05-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Selective binding of antimicrobial porphyrins to the heme-receptor IsdH-NEAT3 of Staphylococcus aureus
Protein Sci., 22, 2013
3VHR
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BU of 3vhr by Molmil
Crystal Structure of capsular polysaccharide assembling protein CapF from Staphylococcus aureus in space group C2221
Descriptor: Capsular polysaccharide synthesis enzyme Cap5F, FORMIC ACID, ZINC ION
Authors:Miyafusa, T, Yoshikazu, T, Caaveiro, J.M.M, Tsumoto, K.
Deposit date:2011-09-01
Release date:2012-02-15
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of the enzyme CapF of Staphylococcus aureus reveals a unique architecture composed of two functional domains.
Biochem.J., 443, 2012

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