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1BW7
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BU of 1bw7 by Molmil
SOLUTION STRUCTURE OF A DNA DUPLEX CONTAINING A REPLICABLE DIFLUOROTOLUENE-ADENINE PAIR
Descriptor: DNA (5'-D(*CP*GP*CP*AP*TP*(DFT)P*GP*TP*TP*AP*CP*C)-3'), DNA (5'-D(*GP*GP*TP*AP*AP*CP*AP*AP*TP*GP*CP*G)-3')
Authors:Guckian, K.M, Krugh, T.R, Kool, E.T.
Deposit date:1998-09-30
Release date:1998-10-07
Last modified:2011-12-28
Method:SOLUTION NMR
Cite:Solution structure of a DNA duplex containing a replicable difluorotoluene-adenine pair.
Nat.Struct.Biol., 5, 1998
1TUT
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BU of 1tut by Molmil
J4/5 Loop from the Candida albicans and Candida dubliniensis Group I Introns
Descriptor: 5'-R(*GP*AP*GP*GP*AP*AP*GP*GP*CP*GP*A)-3', 5'-R(*UP*CP*GP*UP*UP*AP*AP*UP*CP*UP*C)-3'
Authors:Znosko, B.M, Kennedy, S.D, Wille, P.C, Krugh, T.R, Turner, D.H.
Deposit date:2004-06-25
Release date:2004-12-28
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Structural Features and Thermodynamics of the J4/5 Loop from the Candida albicans and Candida dubliniensis Group I Introns.
Biochemistry, 43, 2004
1XV0
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BU of 1xv0 by Molmil
Solution NMR structure of RNA internal loop with three consecutive sheared GA pairs in 5'GGUGGAGGCU/3'PCCGAAGCCG
Descriptor: 5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P)-3', 5'-R(*GP*GP*UP*GP*GP*AP*GP*GP*CP*U)-3'
Authors:Chen, G, Znosko, B.M, Kennedy, S.D, Krugh, T.R, Turner, D.H.
Deposit date:2004-10-26
Release date:2004-11-09
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution Structure of an RNA Internal Loop with Three Consecutive Sheared GA Pairs
Biochemistry, 44, 2005
1MV2
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BU of 1mv2 by Molmil
The tandem, Face-to-Face AP Pairs in 5'(rGGCAPGCCU)2
Descriptor: 5'-R(*GP*GP*CP*AP*(P5P)P*GP*CP*CP*U)-3'
Authors:Znosko, B.M, Burkard, M.E, Krugh, T.R, Turner, D.H.
Deposit date:2002-09-24
Release date:2002-12-18
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Molecular Recognition in Purine-Rich Internal Loops: Thermodynamic, Structural, and Dynamic Consequences of Purine for Adenine Substitutions in 5'(rGGCAAGCCU)2
Biochemistry, 41, 2002
1MV6
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The tandem, Sheared PP Pairs in 5'(rGGCPPGCCU)2
Descriptor: 5'-R(*GP*GP*CP*(P5P)P*(P5P)P*GP*CP*CP*U)-3'
Authors:Znosko, B.M, Burkard, M.E, Krugh, T.R, Turner, D.H.
Deposit date:2002-09-24
Release date:2002-12-18
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Molecular Recognition in Purine-Rich Internal Loops: Thermodynamic, Structural, and Dynamic Consequences of Purine for Adenine Substitutions in 5'(rGGCAAGCCU)2
Biochemistry, 41, 2002
1MV1
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BU of 1mv1 by Molmil
The Tandem, Sheared PA Pairs in 5'(rGGCPAGCCU)2
Descriptor: 5'-R(*GP*GP*CP*(P5P)P*AP*GP*CP*CP*U)-3'
Authors:Znosko, B.M, Burkard, M.E, Krugh, T.R, Turner, D.H.
Deposit date:2002-09-24
Release date:2002-12-18
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Molecular Recognition in Purine-Rich Internal Loops: Thermodynamic, Structural, and Dynamic Consequences of Purine for Adenine Substitutions in 5'(rGGCAAGCCU)2
Biochemistry, 41, 2002
1EKA
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BU of 1eka by Molmil
NMR AND MOLECULAR MODELING REVEAL THAT DIFFERENT HYDROGEN BONDING PATTERNS ARE POSSIBLE FOR GU PAIRS: ONE HYDROGEN BOND FOR EACH GU PAIR IN R(GGCGUGCC)2 AND TWO FOR EACH GU PAIR IN R(GAGUGCUC)2
Descriptor: RNA (5'-R(*GP*AP*GP*UP*GP*CP*UP*C)-3')
Authors:Chen, X, McDowell, J.A, Kierzek, R, Krugh, T.R, Turner, D.H.
Deposit date:2000-03-07
Release date:2000-11-13
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Nuclear magnetic resonance spectroscopy and molecular modeling reveal that different hydrogen bonding patterns are possible for G.U pairs: one hydrogen bond for each G.U pair in r(GGCGUGCC)(2) and two for each G.U pair in r(GAGUGCUC)(2).
Biochemistry, 39, 2000
1EKD
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BU of 1ekd by Molmil
NMR AND MOLECULAR MODELING REVEAL THAT DIFFERENT HYDROGEN BONDING PATTERNS ARE POSSIBLE FOR GU PAIRS: ONE HYDROGEN BOND FOR EACH GU PAIR IN R(GGCGUGCC)2 AND TWO FOR EACH GU PAIR IN R(GAGUGCUC)2
Descriptor: RNA (5'-R(*GP*GP*CP*GP*UP*GP*CP*C)-3')
Authors:Chen, X, McDowell, J.A, Kierzek, R, Krugh, T.R, Turner, D.H.
Deposit date:2000-03-07
Release date:2000-11-13
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Nuclear magnetic resonance spectroscopy and molecular modeling reveal that different hydrogen bonding patterns are possible for G.U pairs: one hydrogen bond for each G.U pair in r(GGCGUGCC)(2) and two for each G.U pair in r(GAGUGCUC)(2).
Biochemistry, 39, 2000
1EEK
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BU of 1eek by Molmil
SOLUTION STRUCTURE OF A NONPOLAR, NON HYDROGEN BONDED BASE PAIR SURROGATE IN DNA.
Descriptor: 5'-D(*CP*GP*CP*AP*TP*(DFT)P*GP*TP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*AP*CP*(MBZ)P*AP*TP*GP*CP*G)-3'
Authors:Kool, E.T, Krugh, T.R, Guckian, K.M.
Deposit date:2000-02-01
Release date:2000-02-16
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution Structure of a Nonpolar, Non-Hydrogen-Bonded Base Pair Surrogate in DNA
J.Am.Chem.Soc., 122, 2000
1MUV
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BU of 1muv by Molmil
Sheared A(anti)-A(anti) Base Pairs in a Destabilizing 2x2 Internal Loop: The NMR Structure of 5'(rGGCAAGCCU)2
Descriptor: 5'-R(*GP*GP*CP*AP*AP*GP*CP*CP*U)-3'
Authors:Znosko, B.M, Burkard, M.E, Schroeder, S.J, Krugh, T.R, Turner, D.H.
Deposit date:2002-09-24
Release date:2002-12-18
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Sheared Aanti-Aanti Base Pairs in a Destabilizing 2x2 Internal Loop: The NMR Structure of 5'(rGGCAAGCCU)2
Biochemistry, 41, 2002
2DD1
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BU of 2dd1 by Molmil
Three consecutive sheared GA pairs in 5'GGUGGAGGCU/3'PCCAAAGCCG
Descriptor: 5'-R(*GP*CP*CP*GP*AP*AP*AP*CP*CP*(P5P))-3', 5'-R(*GP*GP*UP*GP*GP*AP*GP*GP*CP*U)-3'
Authors:Chen, G, Kennedy, S.D, Krugh, T.R, Turner, D.H.
Deposit date:2006-01-19
Release date:2006-06-13
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:An Alternating Sheared AA Pair and Elements of Stability for a Single Sheared Purine-Purine Pair Flanked by Sheared GA Pairs in RNA
Biochemistry, 45, 2006
2DD3
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BU of 2dd3 by Molmil
An alternating sheared AA pair in 5'GGUGAAGGCU/3'PCCGAAGCCG: II. The minor conformation with A6/A5/A16 stack
Descriptor: 5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P))-3', 5'-R(*GP*GP*UP*GP*AP*AP*GP*GP*CP*U)-3'
Authors:Chen, G, Kennedy, S.D, Krugh, T.R, Turner, D.H.
Deposit date:2006-01-19
Release date:2006-06-13
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:An Alternating Sheared AA Pair and Elements of Stability for a Single Sheared Purine-Purine Pair Flanked by Sheared GA Pairs in RNA
Biochemistry, 45, 2006
2DD2
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An alternating sheared AA pair in 5'GGUGAAGGCU/3'PCCGAAGCCG: I. The major conformation with A6/A15/A16 stack
Descriptor: 5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P))-3', 5'-R(*GP*GP*UP*GP*AP*AP*GP*GP*CP*U)-3'
Authors:Chen, G, Kennedy, S.D, Krugh, T.R, Turner, D.H.
Deposit date:2006-01-19
Release date:2006-06-13
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:An Alternating Sheared AA Pair and Elements of Stability for a Single Sheared Purine-Purine Pair Flanked by Sheared GA Pairs in RNA
Biochemistry, 45, 2006
1HS3
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BU of 1hs3 by Molmil
SOLUTION STRUCTURE OF RNA HAIRPIN LOOP UUAAUU AS PART OF HAIRPIN R(GCGUUAAUUCGCA)
Descriptor: 5'-R(*GP*CP*GP*UP*UP*AP*AP*UP*UP*CP*GP*CP*A)-3'
Authors:Zhang, H, Culyba, M, Volkman, H, Krugh, T.R.
Deposit date:2000-12-22
Release date:2003-09-02
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Structural Characterization of Six-Nucleotide RNA Hairpin loops: r(UUAAUU), r(UUAAAU), r(UUAACU)
To be Published
1HS8
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BU of 1hs8 by Molmil
SOLUTION STRUCTURE OF RNA HAIRPIN LOOP UCAAUU AS PART OF HAIRPIN R(GCGUCAAUUCGCA)
Descriptor: 5'-R(*GP*CP*GP*UP*CP*AP*AP*UP*UP*CP*GP*CP*A)-3'
Authors:Zhang, H, Ricart, B, Huck, M, Krugh, T.R.
Deposit date:2000-12-25
Release date:2003-09-02
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Structural Characterization of Six-Nucleotide RNA Hairpin loops r(UCAAUU)
To be Published
1HS1
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BU of 1hs1 by Molmil
SOLUTION STRUCTURE OF RNA HAIRPIN LOOP UUAACU AS PART OF HAIRPIN R(GCGUUAACUCGCA)
Descriptor: 5'-R(*GP*CP*GP*UP*UP*AP*AP*CP*UP*CP*GP*CP*A)-3'
Authors:Zhang, H, Culyba, M, Volkman, H, Krugh, T.R.
Deposit date:2000-12-22
Release date:2003-09-02
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Structural Characterization of Six-Nucleotide RNA Hairpin loops: r(UUAAUU), r(UUAAAU), r(UUAACU)
To be Published
1HS2
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BU of 1hs2 by Molmil
SOLUTION STRUCTURE OF RNA HAIRPIN LOOP UUAAGU AS PART OF HAIRPIN R(GCGUUAAGUCGCA)
Descriptor: 5'-R(*GP*CP*GP*UP*UP*AP*AP*GP*UP*CP*GP*CP*A)-3'
Authors:Zhang, H, Fountain, M.A, Krugh, T.R.
Deposit date:2000-12-22
Release date:2001-08-29
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Structural characterization of a six-nucleotide RNA hairpin loop found in Escherichia coli, r(UUAAGU).
Biochemistry, 40, 2001
1HS4
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BU of 1hs4 by Molmil
SOLUTION STRUCTURE OF RNA HAIRPIN LOOP UUAAAU AS PART OF HAIRPIN R(GCGUUAAAUCGCA)
Descriptor: 5'-R(*GP*CP*GP*UP*UP*AP*AP*AP*UP*CP*GP*CP*A)-3'
Authors:Zhang, H, Culyba, M, Volkman, H, Krugh, T.R.
Deposit date:2000-12-22
Release date:2003-09-02
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Structural Characterization of Six-Nucleotide RNA Hairpin loops: r(UUAAUU), r(UUAAAU), r(UUAACU)
To be Published
1NTT
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BU of 1ntt by Molmil
5'(dCPCPUPCPCPUPUP)3':(rAGGAGGAAA)5', where P=propynyl
Descriptor: 5'-D(*CP*(5PC)P*(PDU)P*(5PC)P*(5PC)P*(PDU)P*(PDU))-3', 5'-R(*AP*AP*AP*GP*GP*AP*GP*GP*A)-3'
Authors:Znosko, B.M, Barnes III, T.W, Krugh, T.R, Turner, D.H.
Deposit date:2003-01-30
Release date:2003-06-10
Last modified:2021-07-28
Method:SOLUTION NMR
Cite:NMR Studies of DNA Single Strands and DNA:RNA Hybrids With and Without 1-Propynylation at C5 of Oligopyrimidines
J.Am.Chem.Soc., 125, 2003
1NTQ
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BU of 1ntq by Molmil
5'(dCCUCCUU)3':3'(rAGGAGGAAA)5'
Descriptor: 5'-D(*CP*CP*UP*CP*CP*UP*U)-3', 5'-R(*AP*AP*AP*GP*GP*AP*GP*GP*A)-3'
Authors:Znosko, B.M, Barnes III, T.W, Krugh, T.R, Turner, D.H.
Deposit date:2003-01-30
Release date:2003-06-10
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:NMR Studies of DNA Single Strands and DNA:RNA Hybrids With and Without 1-Propynylation at C5 of Oligopyrimidines
J.Am.Chem.Soc., 125, 2003
1NTS
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BU of 1nts by Molmil
5'(dCCPUPCPCPUPUP)3':3'(rAGGAGGAAA)5', where P=propynyl
Descriptor: 5'-D(*(5PC)P*(5PC)P*(PDU)P*(5PC)P*(5PC)P*(PDU)P*(PDU))-3', 5'-R(*AP*AP*AP*GP*GP*AP*GP*GP*A)-3'
Authors:Znosko, B.M, Barnes III, T.W, Krugh, T.R, Turner, D.H.
Deposit date:2003-01-30
Release date:2003-06-10
Last modified:2021-07-28
Method:SOLUTION NMR
Cite:NMR Studies of DNA Single Strands and DNA:RNA Hybrids With and Without 1-Propynylation at C5 of Oligopyrimidines
J.Am.Chem.Soc., 125, 2003
2O81
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BU of 2o81 by Molmil
The Structure of Tandem GA RNA Pairs When Flanking Pairs are isoG-isoC Pairs
Descriptor: 5'-R(*GP*CP*(IG)P*GP*AP*(IC)P*GP*CP*A)-3'
Authors:Chen, G, Turner, D.H.
Deposit date:2006-12-11
Release date:2007-07-10
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Stacking Effects on Local Structure in RNA: Changes in the Structure of Tandem GA Pairs when Flanking GC Pairs are Replaced by isoG-isoC Pairs
J.Phys.Chem.B, 111, 2007
2O83
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BU of 2o83 by Molmil
The Structure of Tandem GA RNA Pairs When Flanking Pairs are isoG-isoC Pairs
Descriptor: 5'-R(*GP*GP*(IC)P*GP*AP*(IG)P*CP*CP*A)-3'
Authors:Kennedy, S.D, Turner, D.H.
Deposit date:2006-12-11
Release date:2007-07-10
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Stacking Effects on Local Structure in RNA: Changes in the Structure of Tandem GA Pairs when Flanking GC Pairs are Replaced by isoG-isoC Pairs
J.Phys.Chem.B, 111, 2007
2H49
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BU of 2h49 by Molmil
The NMR Structure of an Internal Loop from 23S Ribosomal RNA of Deinococcus radiodurans Differs from the Structure in the Crystal of the Ribosomal Subunit
Descriptor: 5'-R(*GP*GP*CP*UP*AP*AP*GP*AP*C)-3', 5'-R(*GP*UP*CP*GP*AP*AP*GP*CP*C)-3'
Authors:Shankar, N.
Deposit date:2006-05-23
Release date:2006-11-21
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:The NMR structure of an internal loop from 23S ribosomal RNA differs from its structure in crystals of 50s ribosomal subunits.
Biochemistry, 45, 2006
2IRO
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BU of 2iro by Molmil
The NMR Structures of (rGCUGAGGCU)2 and (rGCGGAUGCU)2
Descriptor: 5'-R(P*GP*CP*GP*GP*AP*UP*GP*CP*U)-3'
Authors:Tolbert, B.S.
Deposit date:2006-10-16
Release date:2007-02-20
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:NMR Structures of (rGCUGAGGCU)(2) and (rGCGGAUGCU)(2): Probing the Structural Features That Shape the Thermodynamic Stability of GA Pairs(,).
Biochemistry, 46, 2007

 

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