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5KNC
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BU of 5knc by Molmil
Crystal structure of the 3 ADP-bound V1 complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, GLYCEROL, MAGNESIUM ION, ...
Authors:Suzuki, K, Mizutani, K, Maruyama, S, Shimono, K, Imai, F.L, Muneyuki, E, Kakinuma, Y, Ishizuka-Katsura, Y, Shirouzu, M, Yokoyama, S, Yamato, I, Murata, T.
Deposit date:2016-06-28
Release date:2016-11-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.015 Å)
Cite:Crystal structures of the ATP-binding and ADP-release dwells of the V1 rotary motor
Nat Commun, 7, 2016
5KNB
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BU of 5knb by Molmil
Crystal structure of the 2 ADP-bound V1 complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, GLYCEROL, MAGNESIUM ION, ...
Authors:Suzuki, K, Mizutani, K, Maruyama, S, Shimono, K, Imai, F.L, Muneyuki, E, Kakinuma, Y, Ishizuka-Katsura, Y, Shirouzu, M, Yokoyama, S, Yamato, I, Murata, T.
Deposit date:2016-06-28
Release date:2016-11-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.251 Å)
Cite:Crystal structures of the ATP-binding and ADP-release dwells of the V1 rotary motor
Nat Commun, 7, 2016
5KND
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BU of 5knd by Molmil
Crystal structure of the Pi-bound V1 complex
Descriptor: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLYCEROL, MAGNESIUM ION, ...
Authors:Suzuki, K, Mizutani, K, Maruyama, S, Shimono, K, Imai, F.L, Muneyuki, E, Kakinuma, Y, Ishizuka-Katsura, Y, Shirouzu, M, Yokoyama, S, Yamato, I, Murata, T.
Deposit date:2016-06-28
Release date:2016-11-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.888 Å)
Cite:Crystal structures of the ATP-binding and ADP-release dwells of the V1 rotary motor
Nat Commun, 7, 2016
3AON
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BU of 3aon by Molmil
Crystal structure of the central axis (NtpD-NtpG) in the catalytic portion of Enterococcus hirae V-type sodium ATPase
Descriptor: NITRATE ION, V-type sodium ATPase subunit D, V-type sodium ATPase subunit G
Authors:Saijo, S, Arai, S, Hossain, K.M.M, Yamato, I, Kakinuma, Y, Ishizuka-Katsura, Y, Terada, T, Shirouzu, M, Yokoyama, S, Iwata, S, Murata, T.
Deposit date:2010-10-04
Release date:2011-10-05
Last modified:2011-12-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the central axis DF complex of the prokaryotic V-ATPase
Proc.Natl.Acad.Sci.USA, 108, 2011
3VR2
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BU of 3vr2 by Molmil
Crystal structure of nucleotide-free A3B3 complex from Enterococcus hirae V-ATPase [eA3B3]
Descriptor: V-type sodium ATPase catalytic subunit A, V-type sodium ATPase subunit B
Authors:Arai, S, Saijo, S, Suzuki, K, Mizutani, K, Kakinuma, Y, Ishizuka-Katsura, Y, Ohsawa, N, Terada, T, Shirouzu, M, Yokoyama, S, Iwata, S, Yamato, I, Murata, T.
Deposit date:2012-04-03
Release date:2013-01-16
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Rotation mechanism of Enterococcus hirae V(1)-ATPase based on asymmetric crystal structures
Nature, 493, 2013
3VR6
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BU of 3vr6 by Molmil
Crystal structure of AMP-PNP bound Enterococcus hirae V1-ATPase [bV1]
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, V-type sodium ATPase catalytic subunit A, ...
Authors:Arai, S, Saijo, S, Suzuki, K, Mizutani, K, Kakinuma, Y, Ishizuka-Katsura, Y, Ohsawa, N, Terada, T, Shirouzu, M, Yokoyama, S, Iwata, S, Yamato, I, Murata, T.
Deposit date:2012-04-03
Release date:2013-01-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.68 Å)
Cite:Rotation mechanism of Enterococcus hirae V(1)-ATPase based on asymmetric crystal structures
Nature, 493, 2013
3VR4
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BU of 3vr4 by Molmil
Crystal structure of Enterococcus hirae V1-ATPase [eV1]
Descriptor: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, GLYCEROL, ...
Authors:Saijo, S, Arai, S, Suzuki, K, Mizutani, K, Kakinuma, Y, Ishizuka-Katsura, Y, Ohsawa, N, Terada, T, Shirouzu, M, Yokoyama, S, Iwata, S, Yamato, I, Murata, T.
Deposit date:2012-04-03
Release date:2013-01-16
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.172 Å)
Cite:Rotation mechanism of Enterococcus hirae V(1)-ATPase based on asymmetric crystal structures
Nature, 493, 2013
3VR3
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BU of 3vr3 by Molmil
Crystal structure of AMP-PNP bound A3B3 complex from Enterococcus hirae V-ATPase [bA3B3]
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, V-type sodium ATPase catalytic subunit A, ...
Authors:Arai, S, Saijo, S, Suzuki, K, Mizutani, K, Kakinuma, Y, Ishizuka-Katsura, Y, Ohsawa, N, Terada, T, Shirouzu, M, Yokoyama, S, Iwata, S, Yamato, I, Murata, T.
Deposit date:2012-04-03
Release date:2013-01-16
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Rotation mechanism of Enterococcus hirae V(1)-ATPase based on asymmetric crystal structures
Nature, 493, 2013
3VR5
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BU of 3vr5 by Molmil
Crystal structure of nucleotide-free Enterococcus hirae V1-ATPase [eV1(L)]
Descriptor: V-type sodium ATPase catalytic subunit A, V-type sodium ATPase subunit B, V-type sodium ATPase subunit D, ...
Authors:Saijo, S, Arai, S, Suzuki, K, Mizutani, K, Kakinuma, Y, Ishizuka-Katsura, Y, Ohsawa, N, Terada, T, Shirouzu, M, Yokoyama, S, Iwata, S, Yamato, I, Murata, T.
Deposit date:2012-04-03
Release date:2013-01-16
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (3.9 Å)
Cite:Rotation mechanism of Enterococcus hirae V(1)-ATPase based on asymmetric crystal structures
Nature, 493, 2013
6LPK
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BU of 6lpk by Molmil
A2AR crystallized in EROCOC17+4, LCP-SFX at 293 K
Descriptor: 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol, Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a, CHOLESTEROL, ...
Authors:Ihara, K, Hato, M, Nakane, T, Yamashita, K, Kimura-Someya, T, Hosaka, T, Ishizuka-Katsura, Y, Tanaka, R, Tanaka, T, Sugahara, M, Hirata, K, Yamamoto, M, Nureki, O, Tono, K, Nango, E, Iwata, S, Shirouzu, M.
Deposit date:2020-01-10
Release date:2020-11-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Isoprenoid-chained lipid EROCOC 17+4 : a new matrix for membrane protein crystallization and a crystal delivery medium in serial femtosecond crystallography.
Sci Rep, 10, 2020
6LPJ
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BU of 6lpj by Molmil
A2AR crystallized in EROCOC17+4, LCP-SFX at 277 K
Descriptor: 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol, Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a, CHOLESTEROL, ...
Authors:Ihara, K, Hato, M, Nakane, T, Yamashita, K, Kimura-Someya, T, Hosaka, T, Ishizuka-Katsura, Y, Tanaka, R, Tanaka, T, Sugahara, M, Hirata, K, Yamamoto, M, Nureki, O, Tono, K, Nango, E, Iwata, S, Shirouzu, M.
Deposit date:2020-01-10
Release date:2020-11-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Isoprenoid-chained lipid EROCOC 17+4 : a new matrix for membrane protein crystallization and a crystal delivery medium in serial femtosecond crystallography.
Sci Rep, 10, 2020
6LPL
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BU of 6lpl by Molmil
A2AR crystallized in EROCOC17+4, SS-ROX at 100 K
Descriptor: 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol, Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a, CHOLESTEROL, ...
Authors:Ihara, K, Hato, M, Nakane, T, Yamashita, K, Kimura-Someya, T, Hosaka, T, Ishizuka-Katsura, Y, Tanaka, R, Tanaka, T, Sugahara, M, Hirata, K, Yamamoto, M, Nureki, O, Tono, K, Nango, E, Iwata, S, Shirouzu, M.
Deposit date:2020-01-11
Release date:2020-11-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Isoprenoid-chained lipid EROCOC 17+4 : a new matrix for membrane protein crystallization and a crystal delivery medium in serial femtosecond crystallography.
Sci Rep, 10, 2020
5ZE9
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BU of 5ze9 by Molmil
Crystal structure of AMP-PNP bound mutant A3B3 complex from Enterococcus hirae V-ATPase
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, MAGNESIUM ION, ...
Authors:Maruyama, S, Suzuki, K, Sasaki, H, Mizutani, K, Saito, Y, Imai, F.L, Ishizuka-Katsura, Y, Shirouzu, M, Ichiro, Y, Murata, T.
Deposit date:2018-02-27
Release date:2019-02-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.102 Å)
Cite:Metastable asymmetrical structure of a shaftless V1motor.
Sci Adv, 5, 2019
5ZEA
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BU of 5zea by Molmil
Crystal structure of the nucleotide-free mutant A3B3
Descriptor: GLYCEROL, V-type sodium ATPase catalytic subunit A, V-type sodium ATPase subunit B
Authors:Maruyama, S, Suzuki, K, Mizutani, K, Saito, Y, Imai, F.L, Ishizuka-Katsura, Y, Shirouzu, M, Ichiro, Y, Murata, T.
Deposit date:2018-02-27
Release date:2019-02-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.384 Å)
Cite:Metastable asymmetrical structure of a shaftless V1motor.
Sci Adv, 5, 2019
3QHE
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BU of 3qhe by Molmil
Crystal structure of the complex between the armadillo repeat domain of adenomatous polyposis coli and the tyrosine-rich domain of Sam68
Descriptor: Adenomatous polyposis coli protein, KH domain-containing, RNA-binding, ...
Authors:Morishita, E.C.J, Murayama, K, Kato-Murayama, M, Ishizuku-Katsura, Y, Tomabechi, Y, Terada, T, Handa, N, Shirouzu, M, Akiyama, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2011-01-25
Release date:2011-11-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structures of the armadillo repeat domain of adenomatous polyposis coli and its complex with the tyrosine-rich domain of sam68
Structure, 19, 2011
8H79
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BU of 8h79 by Molmil
The crystal structure of cyanorhodopsin-II (CyR-II) P7104R from Nodosilinea nodulosa PCC 7104
Descriptor: CHLORIDE ION, HEXADECANE, HEXANE, ...
Authors:Hosaka, T, Kimura-Someya, T, Shirouzu, M.
Deposit date:2022-10-19
Release date:2023-10-25
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Cyanorhodopsin-II: diverse proton-pumping rhodopsins in the cyanobacterial lineage illuminated by large-scale metagenomic
To Be Published
3AU3
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BU of 3au3 by Molmil
Crystal structure of armadillo repeat domain of APC
Descriptor: Adenomatous polyposis coli protein
Authors:Murayama, K, Kato-Murayama, M, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2011-01-28
Release date:2011-11-02
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of the armadillo repeat domain of adenomatous polyposis coli and its complex with the tyrosine-rich domain of sam68
Structure, 19, 2011
5AYQ
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BU of 5ayq by Molmil
Structure-based site-directed photo-crosslinking analyses of multimeric cell-adhesive interactions of VGSC beta subunits
Descriptor: Sodium channel subunit beta-4
Authors:Shimizu, H.
Deposit date:2015-09-01
Release date:2016-06-08
Last modified:2020-02-19
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure-based site-directed photo-crosslinking analyses of multimeric cell-adhesive interactions of voltage-gated sodium channel beta subunits
Sci Rep, 6, 2016
7YNU
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BU of 7ynu by Molmil
Crystal structure of Hen Egg white LYSOZYME introduced with O-(2-nitrobenzyl)-L-tyrosine
Descriptor: ACETATE ION, CHLORIDE ION, Lysozyme C, ...
Authors:Hosaka, T, Shirouzu, M.
Deposit date:2022-08-01
Release date:2022-09-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:Crystal Structure of an Archaeal Tyrosyl-tRNA Synthetase Bound to Photocaged L-Tyrosine and Its Potential Application to Time-Resolved X-ray Crystallography.
Int J Mol Sci, 23, 2022
7YNW
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BU of 7ynw by Molmil
Crystal structure of O-(2-nitrobenzyl)-L-tyrosine-tRNA sythetase in complex with O-(2-nitrobenzyl)-L-tyrosine
Descriptor: (2~{S})-2-azanyl-3-[4-[(2-nitrophenyl)methoxy]phenyl]propanoic acid, Tyrosine--tRNA ligase
Authors:Hosaka, T, Shirouzu, M.
Deposit date:2022-08-01
Release date:2022-09-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Crystal Structure of an Archaeal Tyrosyl-tRNA Synthetase Bound to Photocaged L-Tyrosine and Its Potential Application to Time-Resolved X-ray Crystallography.
Int J Mol Sci, 23, 2022
7YNV
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BU of 7ynv by Molmil
Crystal structure of photolysed Hen Egg white LYSOZYME introduced with O-(2-nitrobenzyl)-L-tyrosine
Descriptor: ACETATE ION, CHLORIDE ION, Lysozyme C, ...
Authors:Hosaka, T, Shirouzu, M.
Deposit date:2022-08-01
Release date:2022-09-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:Crystal Structure of an Archaeal Tyrosyl-tRNA Synthetase Bound to Photocaged L-Tyrosine and Its Potential Application to Time-Resolved X-ray Crystallography.
Int J Mol Sci, 23, 2022
5XDN
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BU of 5xdn by Molmil
Crystal structure of human voltage-dependent anion channel 1 (hVDAC1) in P22121 space group
Descriptor: DECANE, DODECANE, HEXANE, ...
Authors:Hosaka, T, Kimura-Someya, T, Shirouzu, M.
Deposit date:2017-03-28
Release date:2017-06-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Crystal structural characterization reveals novel oligomeric interactions of human voltage-dependent anion channel 1
Protein Sci., 26, 2017
5XAX
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BU of 5xax by Molmil
Parallel homodimer structures of the extracellular domains of the voltage-gated sodium channel beta4 subunit explain its role in cell-cell adhesion
Descriptor: GLYCEROL, Sodium channel subunit beta-4
Authors:Shimizu, H, Yokoyama, S.
Deposit date:2017-03-15
Release date:2017-07-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.903 Å)
Cite:Parallel homodimer structures of the extracellular domains of the voltage-gated sodium channel beta 4 subunit explain its role in cell-cell adhesion
J. Biol. Chem., 292, 2017
5XAW
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BU of 5xaw by Molmil
Parallel homodimer structures of voltage-gated sodium channel beta4 for cell-cell adhesion
Descriptor: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, GLYCEROL, Sodium channel subunit beta-4, ...
Authors:Shimizu, H, Yokoyama, S.
Deposit date:2017-03-15
Release date:2017-07-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.101 Å)
Cite:Parallel homodimer structures of the extracellular domains of the voltage-gated sodium channel beta 4 subunit explain its role in cell-cell adhesion
J. Biol. Chem., 292, 2017
5XDO
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BU of 5xdo by Molmil
Crystal structure of human voltage-dependent anion channel 1 (hVDAC1) in C222 space group
Descriptor: HEXANE, N-OCTANE, PENTANE, ...
Authors:Hosaka, T, Kimura-Someya, T, Shirouzu, M.
Deposit date:2017-03-28
Release date:2017-06-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal structural characterization reveals novel oligomeric interactions of human voltage-dependent anion channel 1
Protein Sci., 26, 2017

 

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