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1N7U
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BU of 1n7u by Molmil
THE RECEPTOR-BINDING PROTEIN P2 OF BACTERIOPHAGE PRD1: CRYSTAL FORM I
Descriptor: ACETATE ION, Adsorption protein P2, CALCIUM ION
Authors:Xu, L, Benson, S.D, Butcher, S.J, Bamford, D.H, Burnett, R.M.
Deposit date:2002-11-18
Release date:2003-04-08
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The Receptor Binding Protein P2 of PRD1, a Virus Targeting Antibiotic-Resistant Bacteria, Has a Novel Fold Suggesting Multiple Functions.
Structure, 11, 2003
1N7V
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BU of 1n7v by Molmil
THE RECEPTOR-BINDING PROTEIN P2 OF BACTERIOPHAGE PRD1: CRYSTAL FORM III
Descriptor: ACETATE ION, Adsorption protein P2, CALCIUM ION
Authors:Xu, L, Benson, S.D, Butcher, S.J, Bamford, D.H, Burnett, R.M.
Deposit date:2002-11-18
Release date:2003-04-08
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The Receptor Binding Protein P2 of PRD1, a Virus Targeting Antibiotic-Resistant Bacteria, Has a Novel Fold Suggesting Multiple Functions.
Structure, 11, 2003
1GW8
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BU of 1gw8 by Molmil
quasi-atomic resolution model of bacteriophage PRD1 sus607 mutant, obtained by combined cryo-EM and X-ray crystallography.
Descriptor: MAJOR CAPSID PROTEIN
Authors:San Martin, C, Huiskonen, J, Bamford, J.K.H, Butcher, S.J, Fuller, S.D, Bamford, D.H, Burnett, R.M.
Deposit date:2002-03-08
Release date:2002-03-15
Last modified:2019-10-23
Method:ELECTRON MICROSCOPY (13.3 Å)
Cite:Minor Proteins, Mobile Arms and Membrane-Capsid Interactions in the Bacteriophage Prd1 Capsid.
Nat.Struct.Biol., 9, 2002
1CJD
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BU of 1cjd by Molmil
THE BACTERIOPHAGE PRD1 COAT PROTEIN, P3, IS STRUCTURALLY SIMILAR TO HUMAN ADENOVIRUS HEXON
Descriptor: PROTEIN (MAJOR CAPSID PROTEIN (P3))
Authors:Benson, S.D, Bamford, J.K.H, Bamford, D.H, Burnett, R.M.
Deposit date:1999-04-12
Release date:1999-09-20
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Viral evolution revealed by bacteriophage PRD1 and human adenovirus coat protein structures.
Cell(Cambridge,Mass.), 98, 1999
1HB7
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BU of 1hb7 by Molmil
quasi-atomic resolution model of bacteriophage PRD1 sus1 mutant, obtained by combined cryo-EM and X-ray crystallography.
Descriptor: BACTERIOPHAGE PRD1 SUS1 MUTANT CAPSID
Authors:San Martin, C, Burnett, R.M, De Haas, F, Heinkel, R, Rutten, T, Fuller, S.D, Butcher, S.J, Bamford, D.H.
Deposit date:2001-04-12
Release date:2001-12-05
Last modified:2019-10-23
Method:ELECTRON MICROSCOPY (14 Å)
Cite:Combined Em/X-Ray Imaging Yields a Quasi-Atomic Model of the Adenovirus-Related Bacteriophage Prd1 and Shows Key Capsid and Membrane Interactions.
Structure, 9, 2001
1GW7
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BU of 1gw7 by Molmil
QUASI-ATOMIC RESOLUTION MODEL OF BACTERIOPHAGE PRD1 CAPSID, OBTAINED BY COMBINED CRYO-EM AND X-RAY CRYSTALLOGRAPHY.
Descriptor: MAJOR CAPSID PROTEIN
Authors:San Martin, C, Huiskonen, J, Bamford, J.K.H, Butcher, S.J, Fuller, S.D, Bamford, D.H, Burnett, R.M.
Deposit date:2002-03-08
Release date:2002-03-13
Last modified:2019-10-23
Method:ELECTRON MICROSCOPY (13.5 Å)
Cite:Minor Proteins, Mobile Arms, and Membrane-Capsid Interactions in Bacteriophage Prd1 Capsid Assembly
Nat.Struct.Biol., 9, 2002
1HX6
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BU of 1hx6 by Molmil
P3, THE MAJOR COAT PROTEIN OF THE LIPID-CONTAINING BACTERIOPHAGE PRD1.
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, MAJOR CAPSID PROTEIN, ...
Authors:Benson, S.D, Bamford, J.K.H, Bamford, D.H, Burnett, R.M.
Deposit date:2001-01-11
Release date:2001-01-24
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:The X-ray crystal structure of P3, the major coat protein of the lipid-containing bacteriophage PRD1, at 1.65 A resolution.
Acta Crystallogr.,Sect.D, 58, 2002
1HQN
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BU of 1hqn by Molmil
THE SELENOMETHIONINE DERIVATIVE OF P3, THE MAJOR COAT PROTEIN OF THE LIPID-CONTAINING BACTERIOPHAGE PRD1.
Descriptor: MAJOR CAPSID PROTEIN
Authors:Benson, S.D, Bamford, J.K.H, Bamford, D.H, Burnett, R.M.
Deposit date:2000-12-18
Release date:2001-01-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The X-ray crystal structure of P3, the major coat protein of the lipid-containing bacteriophage PRD1, at 1.65 A resolution.
Acta Crystallogr.,Sect.D, 58, 2002
1HB5
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BU of 1hb5 by Molmil
quasi-atomic resolution model of bacteriophage PRD1 P3-shell, obtained by combined cryo-EM and X-ray crystallography.
Descriptor: BACTERIOPHAGE PRD1 P3-SHELL
Authors:San Martin, C, Burnett, R.M, De Haas, F, Heinkel, R, Rutten, T, Fuller, S.D, Butcher, S.J, Bamford, D.H.
Deposit date:2001-04-11
Release date:2001-12-05
Last modified:2018-01-31
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Combined Em/X-Ray Imaging Yields a Quasi-Atomic Model of the Adenovirus-Related Bacteriophage Prd1 and Shows Key Capsid and Membrane Interactions.
Structure, 9, 2001
1HB9
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BU of 1hb9 by Molmil
quasi-atomic resolution model of bacteriophage PRD1 wild type virion, obtained by combined cryo-EM and X-ray crystallography.
Descriptor: BACTERIOPHAGE PRD1
Authors:San Martin, C, Burnett, R.M, De Haas, F, Heinkel, R, Rutten, T, Fuller, S.D, Butcher, S.J, Bamford, D.H.
Deposit date:2001-04-13
Release date:2001-12-05
Last modified:2018-01-31
Method:ELECTRON MICROSCOPY (25 Å)
Cite:Combined Em/X-Ray Imaging Yields a Quasi-Atomic Model of the Adenovirus-Related Bacteriophage Prd1 and Shows Key Capsid and Membrane Interactions
Structure, 9, 2001
2W0C
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BU of 2w0c by Molmil
X-ray structure of the entire lipid-containing bacteriophage PM2
Descriptor: CALCIUM ION, MAJOR CAPSID PROTEIN P2, PROTEIN 2, ...
Authors:Abrescia, N.G.A, Grimes, J.M, Kivela, H.M, Assenberg, R, Sutton, G.C, Butcher, S.J, Bamford, J.K.H, Bamford, D.H, Stuart, D.I.
Deposit date:2008-08-13
Release date:2008-09-23
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (7 Å)
Cite:Insights Into Virus Evolution and Membrane Biogenesis from the Structure of the Marine Lipid-Containing Bacteriophage Pm2
Mol.Cell, 31, 2008
2J7N
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BU of 2j7n by Molmil
Structure of the RNAi polymerase from Neurospora crassa
Descriptor: GLYCEROL, MAGNESIUM ION, RNA-DEPENDENT RNA POLYMERASE
Authors:Salgado, P.S, Koivunen, M.R.L, Makeyev, E.V, Bamford, D.H, Stuart, D.I, Grimes, J.M.
Deposit date:2006-10-13
Release date:2006-12-13
Last modified:2017-07-05
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The Structure of an Rnai Polymerase Links RNA Silencing and Transcription.
Plos Biol., 4, 2006
1YQ8
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BU of 1yq8 by Molmil
PRD1 vertex protein P5
Descriptor: Minor capsid protein
Authors:Merckel, M.C, Huiskonen, J.T, Goldman, A, Bamford, D.H, Tuma, R.
Deposit date:2005-02-01
Release date:2005-04-26
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The structure of the bacteriophage PRD1 spike sheds light on the evolution of viral capsid architecture.
Mol.Cell, 18, 2005
1YQ6
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BU of 1yq6 by Molmil
PRD1 vertex protein P5
Descriptor: Minor capsid protein
Authors:Merckel, M.C, Huiskonen, J.T, Goldman, A, Bamford, D.H, Tuma, R.
Deposit date:2005-02-01
Release date:2005-04-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The structure of the bacteriophage PRD1 spike sheds light on the evolution of viral capsid architecture.
Mol.Cell, 18, 2005
1HHS
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BU of 1hhs by Molmil
RNA dependent RNA polymerase from dsRNA bacteriophage phi6
Descriptor: MANGANESE (II) ION, RNA-DIRECTED RNA POLYMERASE
Authors:Grimes, J.M, Butcher, S.J, Makeyev, E.V, Bamford, D.H, Stuart, D.I.
Deposit date:2000-12-28
Release date:2001-03-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:A Mechanism for Initiating RNA-Dependent RNA Polymerization
Nature, 410, 2001
2VVD
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BU of 2vvd by Molmil
Crystal structure of the receptor binding domain of the spike protein P1 from bacteriophage PM2
Descriptor: CALCIUM ION, SPIKE PROTEIN P1
Authors:Abrescia, N.G.A, Grimes, J.M, Kivela, H.K, Assenberg, R, Sutton, G.C, Butcher, S.J, Bamford, J.K.H, Bamford, D.H, Stuart, D.I.
Deposit date:2008-06-06
Release date:2008-09-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Insights Into Virus Evolution and Membrane Biogenesis from the Structure of the Marine Lipid-Containing Bacteriophage Pm2.
Mol.Cell, 31, 2008
2VVF
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BU of 2vvf by Molmil
Crystal structure of the major capsid protein P2 from Bacteriophage PM2
Descriptor: CALCIUM ION, MAJOR CAPSID PROTEIN P2
Authors:Abrescia, N.G.A, Grimes, J.M, Kivela, H.K, Assenberg, R, Sutton, G.C, Butcher, S.J, Bamford, J.K.H, Bamford, D.H, Stuart, D.I.
Deposit date:2008-06-06
Release date:2008-09-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Insights Into Virus Evolution and Membrane Biogenesis from the Structure of the Marine Lipid-Containing Bacteriophage Pm2.
Mol.Cell, 31, 2008
2VVE
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BU of 2vve by Molmil
Crystal structure of the stem and receptor binding domain of the spike protein P1 from bacteriophage PM2
Descriptor: CALCIUM ION, CHLORIDE ION, SPIKE PROTEIN P1
Authors:Abrescia, N.G.A, Grimes, J.M, Kivela, H.K, Assenberg, R, Sutton, G.C, Butcher, S.J, Bamford, J.K.H, Bamford, D.H, Stuart, D.I.
Deposit date:2008-06-06
Release date:2008-09-16
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Insights Into Virus Evolution and Membrane Biogenesis from the Structure of the Marine Lipid-Containing Bacteriophage Pm2.
Mol.Cell, 31, 2008
1HHT
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BU of 1hht by Molmil
RNA dependent RNA polymerase from dsRNA bacteriophage phi6 plus template
Descriptor: DNA (5'-(*TP*TP*TP*CP*C)-3'), MANGANESE (II) ION, P2 PROTEIN
Authors:Grimes, J.M, Butcher, S.J, Makeyev, E.V, Bamford, D.H, Stuart, D.I.
Deposit date:2000-12-28
Release date:2001-03-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:A Mechanism for Initiating RNA-Dependent RNA Polymerization
Nature, 410, 2001
1HI0
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BU of 1hi0 by Molmil
RNA dependent RNA polymerase from dsRNA bacteriophage phi6 plus initiation complex
Descriptor: DNA (5'-(*TP*TP*TP*CP*C)-3'), GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Grimes, J.M, Butcher, S.J, Makeyev, E.V, Bamford, D.H, Stuart, D.I.
Deposit date:2000-12-31
Release date:2001-03-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:A Mechanism for Initiating RNA-Dependent RNA Polymerization
Nature, 410, 2001
1HI1
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BU of 1hi1 by Molmil
RNA dependent RNA polymerase from dsRNA bacteriophage phi6 plus bound NTP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, P2 PROTEIN
Authors:Grimes, J.M, Butcher, S.J, Makeyev, E.V, Bamford, D.H, Stuart, D.I.
Deposit date:2001-01-01
Release date:2001-03-27
Last modified:2020-03-11
Method:X-RAY DIFFRACTION (3 Å)
Cite:A Mechanism for Initiating RNA-Dependent RNA Polymerization
Nature, 410, 2001
1HI8
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BU of 1hi8 by Molmil
RNA dependent RNA polymerase from dsRNA bacteriophage phi6
Descriptor: MAGNESIUM ION, P2 PROTEIN
Authors:Grimes, J.M, Butcher, S.J, Makeyev, E.V, Bamford, D.H, Stuart, D.I.
Deposit date:2001-01-03
Release date:2001-03-27
Last modified:2019-09-18
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A Mechanism for Initiating RNA-Dependent RNA Polymerization
Nature, 410, 2001
2J7O
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BU of 2j7o by Molmil
STRUCTURE OF THE RNAI POLYMERASE FROM NEUROSPORA CRASSA
Descriptor: MAGNESIUM ION, RNA DEPENDENT RNA POLYMERASE
Authors:Salgado, P.S, Koivunen, M.R.L, Makeyev, E.V, Bamford, D.H, Stuart, D.I, Grimes, J.M.
Deposit date:2006-10-13
Release date:2006-12-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:The Structure of an Rnai Polymerase Links RNA Silencing and Transcription.
Plos Biol., 4, 2006
2JL9
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BU of 2jl9 by Molmil
Structural explanation for the role of Mn in the activity of phi6 RNA- dependent RNA polymerase
Descriptor: RNA-DIRECTED RNA POLYMERASE
Authors:Poranen, M.M, Salgado, P.S, Koivunen, M.R.L, Wright, S, Bamford, D.H, Stuart, D.I, Grimes, J.M.
Deposit date:2008-09-05
Release date:2008-11-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural Explanation for the Role of Mn2+ in the Activity of {Phi}6 RNA-Dependent RNA Polymerase.
Nucleic Acids Res., 36, 2008
2JLF
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BU of 2jlf by Molmil
STRUCTURAL EXPLANATION FOR THE ROLE OF MN IN THE ACTIVITY OF PHI6 RNA- DEPENDENT RNA POLYMERASE
Descriptor: MANGANESE (II) ION, RNA-DIRECTED RNA POLYMERASE
Authors:Poranen, M.M, Salgado, P.S, Koivunen, M.R.L, Wright, S, Bamford, D.H, Stuart, D.I, Grimes, J.M.
Deposit date:2008-09-08
Release date:2008-11-04
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural Explanation for the Role of Mn2+ in the Activity of {Phi}6 RNA-Dependent RNA Polymerase.
Nucleic Acids Res., 36, 2008

 

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