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5H1A
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BU of 5h1a by Molmil
Crystal structure of an IclR homolog from Microbacterium sp. strain HM58-2
Descriptor: IclR transcription factor homolog, PHOSPHATE ION
Authors:Akiyama, T, Yamada, Y, Takaya, N, Ito, S, Sasaki, Y, Yajima, S.
Deposit date:2016-10-08
Release date:2017-01-18
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of an IclR homologue from Microbacterium sp. strain HM58-2.
Acta Crystallogr F Struct Biol Commun, 73, 2017
5H6S
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BU of 5h6s by Molmil
Crystal structure of Hydrazidase S179A mutant complexed with a substrate
Descriptor: 4-oxidanylbenzohydrazide, Amidase
Authors:Akiyama, T, Ishii, M, Takuwa, A, Oinuma, K, Sasaki, Y, Takaya, N, Yajima, S.
Deposit date:2016-11-15
Release date:2017-02-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of the substrate recognition of hydrazidase isolated from Microbacterium sp. strain HM58-2, which catalyzes acylhydrazide compounds as its sole carbon source
Biochem. Biophys. Res. Commun., 482, 2017
5H6T
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BU of 5h6t by Molmil
Crystal structure of Hydrazidase from Microbacterium sp. strain HM58-2
Descriptor: Amidase
Authors:Akiyama, T, Ishii, M, Takuwa, A, Oinuma, K, Sasaki, Y, Takaya, N, Yajima, S.
Deposit date:2016-11-15
Release date:2017-03-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural basis of the substrate recognition of hydrazidase isolated from Microbacterium sp. strain HM58-2, which catalyzes acylhydrazide compounds as its sole carbon source
Biochem. Biophys. Res. Commun., 482, 2017
7CUO
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BU of 7cuo by Molmil
IclR transcription factor complexed with 4-hydroxybenzoic acid from Microbacterium hydrocarbonoxydans
Descriptor: P-HYDROXYBENZOIC ACID, SULFATE ION, Transcription factor
Authors:Akiyama, T, Ito, S, Sasaki, Y, Yajima, S.
Deposit date:2020-08-23
Release date:2021-05-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of the conformational changes in Microbacterium hydrocarbonoxydans IclR transcription factor homolog due to ligand binding.
Biochim Biophys Acta Proteins Proteom, 1869, 2021
7DQB
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BU of 7dqb by Molmil
Crystal structure of an IclR homolog complexed with 4-hydroxybenzoate from Microbacterium hydrocarbonoxydans in P212121 form
Descriptor: IclR homolog, P-HYDROXYBENZOIC ACID
Authors:Akiyama, T, Sasaki, Y, Ito, S, Yajima, S.
Deposit date:2020-12-23
Release date:2021-05-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.101 Å)
Cite:Structural basis of the conformational changes in Microbacterium hydrocarbonoxydans IclR transcription factor homolog due to ligand binding.
Biochim Biophys Acta Proteins Proteom, 1869, 2021
5B2H
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BU of 5b2h by Molmil
Crystal structure of HA33 from Clostridium botulinum serotype C strain Yoichi
Descriptor: HA-33, TRIETHYLENE GLYCOL
Authors:Akiyama, T, Hayashi, S, Matsumoto, T, Hasegawa, K, Yamano, A, Suzuki, T, Niwa, K, Watanabe, T, Sagane, Y, Yajima, S.
Deposit date:2016-01-15
Release date:2016-06-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Conformational divergence in the HA-33/HA-17 trimer of serotype C and D botulinum toxin complex
Biochem.Biophys.Res.Commun., 476, 2016
3WG8
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BU of 3wg8 by Molmil
Crystal structure of the abscisic acid receptor PYR1 in complex with an antagonist AS6
Descriptor: (2Z,4E)-5-[(1S)-3-(hexylsulfanyl)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid, Abscisic acid receptor PYR1
Authors:Akiyama, T, Sue, M, Takeuchi, J, Okamoto, M, Muto, T, Endo, A, Nambara, E, Hirai, N, Ohnishi, T, Cutler, S.R, Todoroki, Y, Yajima, S.
Deposit date:2013-07-31
Release date:2014-05-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Designed abscisic acid analogs as antagonists of PYL-PP2C receptor interactions
Nat.Chem.Biol., 10, 2014
5YGV
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BU of 5ygv by Molmil
Crystal structure of the abscisic acid receptor PYR1 in complex with an antagonist
Descriptor: (2Z,4E)-3-methyl-5-[(1S,4S)-2,6,6-trimethyl-4-[3-(4-methylphenyl)prop-2-ynoxy]-1-oxidanyl-cyclohex-2-en-1-yl]penta-2,4-dienoic acid, Abscisic acid receptor PYR1
Authors:Akiyama, T, Sue, M, Takeuchi, J, Mimura, N, Okamoto, M, Monda, K, Iba, K, Ohnishi, T, Todoroki, Y, Yajima, S.
Deposit date:2017-09-27
Release date:2018-04-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure-Based Chemical Design of Abscisic Acid Antagonists That Block PYL-PP2C Receptor Interactions.
ACS Chem. Biol., 13, 2018
3QHE
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BU of 3qhe by Molmil
Crystal structure of the complex between the armadillo repeat domain of adenomatous polyposis coli and the tyrosine-rich domain of Sam68
Descriptor: Adenomatous polyposis coli protein, KH domain-containing, RNA-binding, ...
Authors:Morishita, E.C.J, Murayama, K, Kato-Murayama, M, Ishizuku-Katsura, Y, Tomabechi, Y, Terada, T, Handa, N, Shirouzu, M, Akiyama, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2011-01-25
Release date:2011-11-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structures of the armadillo repeat domain of adenomatous polyposis coli and its complex with the tyrosine-rich domain of sam68
Structure, 19, 2011
2J4X
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BU of 2j4x by Molmil
Streptococcus dysgalactiae-derived mitogen (SDM)
Descriptor: GLYCEROL, MITOGEN, ZINC ION
Authors:Saarinen, S, Kato, H, Uchiyama, T, Miyoshi-Akiyama, T, Papageorgiou, A.C.
Deposit date:2006-09-07
Release date:2007-09-25
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal Structure of Streptococcus Dysgalactiae-Derived Mitogen Reveals a Zinc-Binding Site and Alterations in Tcr Binding.
J.Mol.Biol., 373, 2007
6KFQ
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BU of 6kfq by Molmil
Crystal structure of thermophilic rhodopsin from Rubrobacter xylanophilus
Descriptor: RETINAL, Rhodopsin, SULFATE ION, ...
Authors:Suzuki, K, Akiyama, T, Hayashi, T, Yasuda, S, Kanehara, K, Kojima, K, Tanabe, M, Kato, R, Senda, T, Sudo, Y, Kinoshita, M, Murata, T.
Deposit date:2019-07-08
Release date:2020-04-08
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:How Does a Microbial Rhodopsin RxR Realize Its Exceptionally High Thermostability with the Proton-Pumping Function Being Retained?
J.Phys.Chem.B, 124, 2020
3GNR
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BU of 3gnr by Molmil
Crystal Structure of a Rice Os3BGlu6 Beta-Glucosidase with covalently bound 2-deoxy-2-fluoroglucoside to the catalytic nucleophile E396
Descriptor: 2-deoxy-2-fluoro-alpha-D-glucopyranose, GLYCEROL, Os03g0212800 protein
Authors:Seshadri, S, Akiyama, T, Opassiri, R, Kuaprasert, B, Cairns, J.R.K.
Deposit date:2009-03-17
Release date:2009-07-21
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Structural and enzymatic characterization of Os3BGlu6, a rice beta-glucosidase hydrolyzing hydrophobic glycosides and (1->3)- and (1->2)-linked disaccharides.
Plant Physiol., 151, 2009
3GNP
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BU of 3gnp by Molmil
Crystal Structure of a Rice Os3BGlu6 Beta-Glucosidase with Octyl-Beta-D-Thio-Glucoside
Descriptor: GLYCEROL, Os03g0212800 protein, octyl 1-thio-beta-D-glucopyranoside
Authors:Seshadri, S, Akiyama, T, Opassiri, R, Kuaprasert, B, Cairns, J.R.K.
Deposit date:2009-03-17
Release date:2009-07-21
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural and enzymatic characterization of Os3BGlu6, a rice {beta}-glucosidase hydrolyzing hydrophobic glycosides and (1->3)- and (1->2)-linked disaccharides.
Plant Physiol., 2009
3GNO
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BU of 3gno by Molmil
Crystal Structure of a Rice Os3BGlu6 Beta-Glucosidase
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLYCEROL, Os03g0212800 protein
Authors:Seshadri, S, Akiyama, T, Opassiri, R, Kuaprasert, B, Cairns, J.R.K.
Deposit date:2009-03-17
Release date:2009-07-21
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Structural and enzymatic characterization of Os3BGlu6, a rice {beta}-glucosidase hydrolyzing hydrophobic glycosides and (1->3)- and (1->2)-linked disaccharides.
Plant Physiol., 2009
4TRW
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BU of 4trw by Molmil
Structure of BACE1 complex with a syn-HEA-type inhibitor
Descriptor: Beta-secretase 1, L-alpha-glutamyl-L-isoleucyl-N-[(2R,3S)-1-{[(1S)-1-carboxybutyl]amino}-2-hydroxy-5-methylhexan-3-yl]-3-thiophen-2-yl-L-alaninamide
Authors:Akaji, K, Teruya, K, Akiyama, T, Sanjho, A, Yamashita, E, Nakagawa, A.
Deposit date:2014-06-18
Release date:2015-07-01
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Evaluation of transition-state mimics in a superior BACE1 cleavage sequence as peptide-mimetic BACE1 inhibitors
Bioorg.Med.Chem., 23, 2015
4TRZ
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BU of 4trz by Molmil
Structure of BACE1 complex with 2-thiophenyl HEA-type inhibitor
Descriptor: 2-thiophenyl HEA-type inhibitor, Beta-secretase 1
Authors:Akaji, K, Teruya, K, Akiyama, T, Sanjho, A, Yamashita, E, Nakagawa, A.
Deposit date:2014-06-18
Release date:2015-07-01
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Evaluation of transition-state mimics in a superior BACE1 cleavage sequence as peptide-mimetic BACE1 inhibitors
Bioorg.Med.Chem., 23, 2015
4TRY
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BU of 4try by Molmil
Structure of BACE1 complex with a HEA-type inhibitor
Descriptor: Beta-secretase 1, GLU-ILE-TIH-THC-NVA
Authors:Akaji, K, Teruya, K, Akiyama, T, Sanjho, A, Yamashita, E, Nakagawa, A.
Deposit date:2014-06-18
Release date:2015-07-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structure of BACE1 complex with an anti-HMC-type inhibitor
to be published
6LU2
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BU of 6lu2 by Molmil
Crystal structure of a substrate binding protein from Microbacterium hydrocarbonoxydans
Descriptor: Substrate binding protein
Authors:Shimamura, K, Akiyama, T, Yokoyama, K, Takenoya, M, Ito, S, Sasaki, Y, Yajima, S.
Deposit date:2020-01-25
Release date:2020-03-25
Last modified:2020-04-22
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural basis of substrate recognition by the substrate binding protein (SBP) of a hydrazide transporter, obtained from Microbacterium hydrocarbonoxydans.
Biochem.Biophys.Res.Commun., 525, 2020
6LU3
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BU of 6lu3 by Molmil
Crystal structure of a substrate binding protein from Microbacterium hydrocarbonoxydans complexed with 4-hydroxybenzoate hydrazide
Descriptor: 4-oxidanylbenzohydrazide, Substrate binding protein
Authors:Shimamura, K, Akiyama, T, Yokoyama, K, Takenoya, M, Ito, S, Sasaki, Y, Yajima, S.
Deposit date:2020-01-25
Release date:2020-03-25
Last modified:2020-04-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis of substrate recognition by the substrate binding protein (SBP) of a hydrazide transporter, obtained from Microbacterium hydrocarbonoxydans.
Biochem.Biophys.Res.Commun., 525, 2020
6LU4
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BU of 6lu4 by Molmil
Crystal structure of the substrate binding protein from Microbacterium hydrocarbonoxydans complexed with propylparaben
Descriptor: Substrate binding protein, propyl 4-hydroxybenzoate
Authors:Shimamura, K, Akiyama, T, Yokoyama, K, Takenoya, M, Ito, S, Sasaki, Y, Yajima, S.
Deposit date:2020-01-25
Release date:2020-03-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis of substrate recognition by the substrate binding protein (SBP) of a hydrazide transporter, obtained from Microbacterium hydrocarbonoxydans.
Biochem.Biophys.Res.Commun., 525, 2020
3W9Y
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BU of 3w9y by Molmil
Crystal structure of the human DLG1 guanylate kinase domain
Descriptor: Disks large homolog 1
Authors:Mori, S, Tezuka, Y, Arakawa, A, Handa, N, Shirouzu, M, Akiyama, T, Yokoyama, S.
Deposit date:2013-04-18
Release date:2013-06-26
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of the guanylate kinase domain from discs large homolog 1 (DLG1/SAP97)
Biochem.Biophys.Res.Commun., 435, 2013
2DX1
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BU of 2dx1 by Molmil
Crystal structure of RhoGEF protein Asef
Descriptor: Rho guanine nucleotide exchange factor 4
Authors:Murayama, K, Kato-Murayama, M, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-08-22
Release date:2007-01-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Crystal structure of the rac activator, Asef, reveals its autoinhibitory mechanism
J.Biol.Chem., 282, 2007
3AU3
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BU of 3au3 by Molmil
Crystal structure of armadillo repeat domain of APC
Descriptor: Adenomatous polyposis coli protein
Authors:Murayama, K, Kato-Murayama, M, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2011-01-28
Release date:2011-11-02
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of the armadillo repeat domain of adenomatous polyposis coli and its complex with the tyrosine-rich domain of sam68
Structure, 19, 2011
1R77
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BU of 1r77 by Molmil
Crystal structure of the cell wall targeting domain of peptidylglycan hydrolase ALE-1
Descriptor: Cell Wall Targeting Domain of Glycylglycine Endopeptidase ALE-1
Authors:Lu, J.Z, Fujiwara, T, Komatsuzawa, H, Sugai, M, Sakon, J.
Deposit date:2003-10-20
Release date:2005-04-12
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Cell Wall-targeting Domain of Glycylglycine Endopeptidase Distinguishes among Peptidoglycan Cross-bridges.
J.Biol.Chem., 281, 2006
6L9W
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BU of 6l9w by Molmil
Crystal structure of mouse TIFA (T9E/C36S mutant)
Descriptor: TRAF-interacting protein with FHA domain-containing protein A
Authors:Nakamura, T, Yamagata, Y.
Deposit date:2019-11-11
Release date:2020-04-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural analysis of TIFA: Insight into TIFA-dependent signal transduction in innate immunity.
Sci Rep, 10, 2020

 

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