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5O1Q
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BU of 5o1q by Molmil
LysF1 sh3b domain structure
Descriptor: sh3b domain
Authors:Benesik, M, Novacek, J, Janda, L, Dopitova, R, Pernisova, M, Melkova, K, Tisakova, L, Doskar, J, Zidek, L, Hejatko, J, Pantucek, R.
Deposit date:2017-05-19
Release date:2017-09-20
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Role of SH3b binding domain in a natural deletion mutant of Kayvirus endolysin LysF1 with a broad range of lytic activity.
Virus Genes, 54, 2018
1PQT
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BU of 1pqt by Molmil
REFINEMENT OF d(GCGAAGC) HAIRPIN STRUCTURE USING ONE- AND TWO-BOND RESIDUAL DIPOLAR COUPLINGS
Descriptor: 5'-D(*GP*CP*GP*AP*AP*GP*C)-3'
Authors:Padrta, P, Stefl, R, Zidek, L, Sklenar, V.
Deposit date:2003-06-19
Release date:2003-07-01
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Refinement of d(GCGAAGC) Hairpin Structure Using One- and Two-Bond Residual Dipolar Couplings
J.Biomol.NMR, 24, 2002
6SJW
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BU of 6sjw by Molmil
Structure of the self-processing module of iron-regulated FrpC of N. Meningitidis with calcium ions
Descriptor: CALCIUM ION, Iron-regulated protein FrpC
Authors:Kuban, V, Macek, P, Hritz, J, Nechvatalova, K, Nedbalcova, K, Faldyna, M, Zidek, L, Bumba, L.
Deposit date:2019-08-14
Release date:2020-02-26
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural Basis of Ca 2+ -Dependent Self-Processing Activity of Repeat-in-Toxin Proteins.
Mbio, 11, 2020
6SJX
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BU of 6sjx by Molmil
Precursor structure of the self-processing module of iron-regulated FrpC of N. Meningitidis with calcium ions
Descriptor: CALCIUM ION, Iron-regulated protein FrpC
Authors:Kuban, V, Macek, P, Hritz, J, Nechvatalova, K, Nedbalcova, K, Faldyna, M, Zidek, L, Bumba, L.
Deposit date:2019-08-14
Release date:2020-02-26
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural Basis of Ca 2+ -Dependent Self-Processing Activity of Repeat-in-Toxin Proteins.
Mbio, 11, 2020
6FVC
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BU of 6fvc by Molmil
Protein environment affects the water-tryptophan binding mode. Molecular dynamics simulations of Engrailed homeodomain mutants
Descriptor: Segmentation polarity homeobox protein engrailed
Authors:Trosanova, Z, Zachrdla, M, Jansen, S, Srb, P, Zidek, L, Kozelka, J.
Deposit date:2018-03-02
Release date:2019-04-03
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Protein environment affects the water-tryptophan binding mode. MD, QM/MM, and NMR studies of engrailed homeodomain mutants.
Phys Chem Chem Phys, 20, 2018
3MM4
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BU of 3mm4 by Molmil
Crystal structure of the receiver domain of the histidine kinase CKI1 from Arabidopsis thaliana
Descriptor: Histidine kinase homolog
Authors:Marek, J, Klumpler, T, Pekarova, B, Triskova, O, Horak, J, Zidek, L, Dopitova, R, Hejatko, J, Janda, L.
Deposit date:2010-04-19
Release date:2011-04-13
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and binding specificity of the receiver domain of sensor histidine kinase CKI1 from Arabidopsis thaliana.
Plant J., 67, 2011
2M4K
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BU of 2m4k by Molmil
Solution structure of the delta subunit of RNA polymerase from Bacillus subtilis
Descriptor: DNA-directed RNA polymerase subunit delta
Authors:Papouskova, V, Novacek, J, Kaderavek, P, Zidek, L, Rabatinova, A, Sanderova, H, Krasny, L, Sklenar, V.
Deposit date:2013-02-07
Release date:2013-10-09
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural Study of the Partially Disordered Full-Length delta Subunit of RNA Polymerase from Bacillus subtilis.
Chembiochem, 14, 2013
3MMN
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BU of 3mmn by Molmil
Crystal structure of the receiver domain of the histidine kinase CKI1 from Arabidopsis thaliana complexed with Mg2+
Descriptor: Histidine kinase homolog, MAGNESIUM ION
Authors:Marek, J, Klumpler, T, Pekarova, B, Triskova, O, Horak, J, Zidek, L, Dopitova, R, Hejatko, J, Janda, L.
Deposit date:2010-04-20
Release date:2011-04-13
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure and binding specificity of the receiver domain of sensor histidine kinase CKI1 from Arabidopsis thaliana.
Plant J., 67, 2011
2KGF
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BU of 2kgf by Molmil
N-terminal domain of capsid protein from the Mason-Pfizer monkey virus
Descriptor: Capsid protein p27
Authors:Macek, P, Chmelik, J, Zidek, L, Kaderavek, P, Padrta, P, Ruml, T, Pichova, I, Rumlova, M, Sklenar, V.
Deposit date:2009-03-10
Release date:2009-08-11
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:NMR structure of the N-terminal domain of capsid protein from the mason-pfizer monkey virus
J.Mol.Biol., 392, 2009
5LNM
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BU of 5lnm by Molmil
Crystal structure of D1050E mutant of the receiver domain of the histidine kinase CKI1 from Arabidopsis thaliana
Descriptor: Histidine kinase CKI1
Authors:Otrusinova, O, Demo, G, Kaderavek, P, Jansen, S, Jasenakova, Z, Pekarova, B, Janda, L, Wimmerova, M, Hejatko, J, Zidek, L.
Deposit date:2016-08-05
Release date:2017-09-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Conformational dynamics are a key factor in signaling mediated by the receiver domain of a sensor histidine kinase from Arabidopsis thaliana.
J. Biol. Chem., 292, 2017
5LNN
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BU of 5lnn by Molmil
Crystal structure of D1050A mutant of the receiver domain of the histidine kinase CKI1 from Arabidopsis thaliana
Descriptor: Histidine kinase CKI1
Authors:Otrusinova, O, Demo, G, Kaderavek, P, Jansen, S, Jasenakova, Z, Pekarova, B, Janda, L, Wimmerova, M, Hejatko, J, Zidek, L.
Deposit date:2016-08-05
Release date:2017-09-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Conformational dynamics are a key factor in signaling mediated by the receiver domain of a sensor histidine kinase from Arabidopsis thaliana.
J. Biol. Chem., 292, 2017
5MWW
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BU of 5mww by Molmil
Sigma1.1 domain of sigmaA from Bacillus subtilis
Descriptor: RNA polymerase sigma factor SigA
Authors:Zachrdla, M, Padrta, P, Rabatinova, A, Sanderova, H, Barvik, I, Krasny, L, Zidek, L.
Deposit date:2017-01-20
Release date:2017-06-14
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structure of domain 1.1 of the sigma (A) factor from Bacillus subtilis is preformed for binding to the RNA polymerase core.
J. Biol. Chem., 292, 2017
4NC8
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BU of 4nc8 by Molmil
N-terminal domain of delta-subunit of RNA polymerase complexed with nickel ions
Descriptor: DNA-directed RNA polymerase subunit delta, NICKEL (II) ION
Authors:Demo, G, Papouskova, V, Komarek, J, Sanderova, H, Rabatinova, A, Krasny, L, Zidek, L, Sklenar, V, Wimmerova, M.
Deposit date:2013-10-24
Release date:2014-07-02
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:X-ray vs. NMR structure of N-terminal domain of delta-subunit of RNA polymerase.
J.Struct.Biol., 187, 2014
5N2N
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BU of 5n2n by Molmil
Crystal structure of the receiver domain of the histidine kinase CKI1 from Arabidopsis thaliana complexed with Mg2+ and BeF3-
Descriptor: BERYLLIUM TRIFLUORIDE ION, Histidine kinase CKI1, MAGNESIUM ION
Authors:Otrusinova, O, Demo, G, Padrta, P, Jasenakova, Z, Pekarova, B, Gelova, Z, Szmitkowska, A, Kaderavek, P, Jansen, S, Zachrdla, M, Klumpler, T, Marek, J, Hritz, J, Janda, L, Iwai, H, Wimmerova, M, Hejatko, J, Zidek, L.
Deposit date:2017-02-08
Release date:2017-09-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Conformational dynamics are a key factor in signaling mediated by the receiver domain of a sensor histidine kinase from Arabidopsis thaliana.
J. Biol. Chem., 292, 2017
4NC7
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BU of 4nc7 by Molmil
N-terminal domain of delta-subunit of RNA polymerase complexed with I3C and nickel ions
Descriptor: 5-amino-2,4,6-triiodobenzene-1,3-dicarboxylic acid, DNA-directed RNA polymerase subunit delta, NICKEL (II) ION
Authors:Demo, G, Papouskova, V, Komarek, J, Sanderova, H, Rabatinova, A, Krasny, L, Zidek, L, Sklenar, V, Wimmerova, M.
Deposit date:2013-10-24
Release date:2014-07-02
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:X-ray vs. NMR structure of N-terminal domain of delta-subunit of RNA polymerase.
J.Struct.Biol., 187, 2014
2KRC
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BU of 2krc by Molmil
Solution structure of the N-terminal domain of Bacillus subtilis delta subunit of RNA polymerase
Descriptor: DNA-directed RNA polymerase subunit delta
Authors:Motackova, V, Sanderova, H, Zidek, L, Novacek, J, Padrta, P, Svenkova, A, Jonak, J, Krasny, L, Sklenar, V.
Deposit date:2009-12-16
Release date:2010-04-07
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Solution structure of the N-terminal domain of Bacillus subtilis delta subunit of RNA polymerase and its classification based on structural homologs
Proteins, 78, 2010
1KR8
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BU of 1kr8 by Molmil
Refinement of d(GCGAAGC) Hairpin Structure Using One-and Two-Bonds Residual Dipolar Couplings
Descriptor: 5'-D(*GP*CP*GP*AP*AP*GP*C)-3'
Authors:Padrta, P, Stefl, R, Zidek, L, Sklenar, V.
Deposit date:2002-01-09
Release date:2002-12-11
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Refinement of d(GCGAAGC) Hairpin Structure Using One- and Two-Bond Residual Dipolar Couplings
J.BIOMOL.NMR, 24, 2002
2LUF
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BU of 2luf by Molmil
Retro Trp-cage peptide
Descriptor: Retro Trp-cage peptide
Authors:Bathula, S, Sklenar, V, Zidek, L, Vondrasek, J, Vymetal, J.
Deposit date:2012-06-13
Release date:2013-06-26
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:All ingredients still do not guarantee a taste. Can we predict a fold of retro peptides or proteins? The retro Trp-cage model case.
To be Published
1I04
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BU of 1i04 by Molmil
CRYSTAL STRUCTURE OF MOUSE MAJOR URINARY PROTEIN-I FROM MOUSE LIVER
Descriptor: MAJOR URINARY PROTEIN I
Authors:Timm, D.E, Baker, L.J, Mueller, H, Zidek, L, Novotny, M.V.
Deposit date:2001-01-28
Release date:2001-02-14
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of pheromone binding to mouse major urinary protein (MUP-I)
Protein Sci., 10, 2001
1I06
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BU of 1i06 by Molmil
CRYSTAL STRUCTURE OF MOUSE MAJOR URINARY PROTEIN (MUP-I) COMPLEXED WITH SEC-BUTYL-THIAZOLINE
Descriptor: 2-(SEC-BUTYL)THIAZOLE, CADMIUM ION, MAJOR URINARY PROTEIN I
Authors:Timm, D.E, Baker, L.J, Mueller, H, Zidek, L, Novotny, M.V.
Deposit date:2001-01-28
Release date:2001-02-14
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural Basis of Pheromone Binding to Mouse Major Urinary Protein (MUP-I)
Protein Sci., 10, 2001
1I05
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BU of 1i05 by Molmil
CRYSTAL STRUCTURE OF MOUSE MAJOR URINARY PROTEIN (MUP-I) COMPLEXED WITH HYDROXY-METHYL-HEPTANONE
Descriptor: 6-HYDROXY-6-METHYL-HEPTAN-3-ONE, CADMIUM ION, MAJOR URINARY PROTEIN I
Authors:Timm, D.E, Baker, L.J, Mueller, H, Zidek, L, Novotny, M.V.
Deposit date:2001-01-28
Release date:2001-02-14
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Basis of Pheromone Binding to Mouse Major Urinary Protein (MUP-I)
Protein Sci., 10, 2001
2JNT
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BU of 2jnt by Molmil
Structure of Bombyx mori Chemosensory Protein 1 in Solution
Descriptor: Chemosensory protein CSP1
Authors:Jansen, S, Zidek, L, Chmelik, J, Novak, P, Padrta, P, Picimbon, J, Lofstedt, C, Sklenar, V.
Deposit date:2007-02-02
Release date:2007-11-20
Last modified:2023-12-20
Method:SOLUTION NMR
Cite:Structure of Bombyx mori chemosensory protein 1 in solution
Arch.Insect Biochem.Physiol., 66, 2007
3CCK
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BU of 3cck by Molmil
Human CD69
Descriptor: CHLORIDE ION, Early activation antigen CD69
Authors:Brynda, J, Vanek, O, Rezacova, P.
Deposit date:2008-02-26
Release date:2008-11-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Soluble recombinant CD69 receptors optimized to have an exceptional physical and chemical stability display prolonged circulation and remain intact in the blood of mice
Febs J., 275, 2008
4PAC
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BU of 4pac by Molmil
Crystal Structure of Histidine-containing Phosphotransfer Protein AHP2 from Arabidopsis thaliana
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Histidine-containing phosphotransfer protein 2, IMIDAZOLE
Authors:Degtjarik, O, Dopitova, R, Puehringer, S, Weiss, M.S, Janda, L, Hejatko, J, Kuta-Smatanova, I.
Deposit date:2014-04-08
Release date:2015-05-20
Last modified:2017-09-06
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Crystal structure of AHP2 from Arabidopsis thaliana
To Be Published

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