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3LQB
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BU of 3lqb by Molmil
Crystal structure of the hatching enzyme ZHE1 from the zebrafish Danio rerio
Descriptor: 1,2-ETHANEDIOL, LOC792177 protein, SULFATE ION, ...
Authors:Tanokura, M, Okada, A, Nagata, K, Yasumasu, S, Ohtsuka, J, Iuchi, I.
Deposit date:2010-02-08
Release date:2010-09-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Crystal structure of zebrafish hatching enzyme 1 from the zebrafish Danio rerio
J.Mol.Biol., 402, 2010
3AEV
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BU of 3aev by Molmil
Crystal structure of a/eIF2alpha-aDim2p-rRNA complex from Pyrococcus horikoshii OT3
Descriptor: Putative uncharacterized protein PH1566, RNA (5'-R(*GP*GP*AP*UP*CP*AP*CP*CP*UP*CP*C)-3'), Translation initiation factor 2 subunit alpha
Authors:Tanokura, M, Jia, M.Z, Nagata, K.
Deposit date:2010-02-10
Release date:2010-04-21
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:An archaeal Dim2-like protein, aDim2p, forms a ternary complex with a/eIF2 alpha and the 3' end fragment of 16S rRNA
J.Mol.Biol., 398, 2010
2E3U
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BU of 2e3u by Molmil
Crystal structure analysis of Dim2p from Pyrococcus horikoshii OT3
Descriptor: Hypothetical protein PH1566
Authors:Tanokura, M, Jia, M.Z.
Deposit date:2006-11-29
Release date:2007-10-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of Dim2p: a preribosomal RNA processing factor, from Pyrococcus horikoshii OT3 at 2.30 A
Proteins, 69, 2007
4WFJ
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BU of 4wfj by Molmil
Crystal structure of PET-degrading cutinase Cut190 S226P mutant in Ca(2+)-bound state at 1.75 angstrom resolution
Descriptor: CALCIUM ION, CHLORIDE ION, Cutinase
Authors:Miyakawa, T, Mizushima, H, Ohtsuka, J, Oda, M, Kawai, F, Tanokura, M.
Deposit date:2014-09-15
Release date:2014-12-24
Last modified:2020-01-29
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural basis for the Ca(2+)-enhanced thermostability and activity of PET-degrading cutinase-like enzyme from Saccharomonospora viridis AHK190.
Appl.Microbiol.Biotechnol., 99, 2015
4WFK
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BU of 4wfk by Molmil
Crystal structure of PET-degrading cutinase Cut190 S226P mutant in Ca(2+)-bound state at 2.35 angstrom resolution
Descriptor: CALCIUM ION, CHLORIDE ION, Cutinase
Authors:Miyakawa, T, Mizushima, H, Ohtsuka, J, Oda, M, Kawai, F, Tanokura, M.
Deposit date:2014-09-15
Release date:2014-12-24
Last modified:2020-01-29
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural basis for the Ca(2+)-enhanced thermostability and activity of PET-degrading cutinase-like enzyme from Saccharomonospora viridis AHK190.
Appl.Microbiol.Biotechnol., 99, 2015
5TLC
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BU of 5tlc by Molmil
Crystal structure of BdsA from Bacillus subtilis WU-S2B
Descriptor: Dibenzothiophene desulfurization enzyme A
Authors:Okai, M, Lee, W.C, Tanokura, M.
Deposit date:2016-10-11
Release date:2017-05-03
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of dibenzothiophene sulfone monooxygenase BdsA from Bacillus subtilis WU-S2B
Proteins, 85, 2017
4O0L
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BU of 4o0l by Molmil
Crystal structure of NADPH-Dependent 3-Quinuclidinone Reductase from Rhodotorula Rubra
Descriptor: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, NADPH-dependent 3-quinuclidinone reductase
Authors:Takeshita, D, Tanokura, M.
Deposit date:2013-12-13
Release date:2014-08-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis of stereospecific reduction by quinuclidinone reductase
AMB Express, 4, 2014
2MK4
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BU of 2mk4 by Molmil
Solution structure of ORF2
Descriptor: Open reading frame 2
Authors:Miyakawa, T, Kobayashi, H, Tashiro, M, Yamanaka, H, Tanokura, M.
Deposit date:2014-01-24
Release date:2015-03-25
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural Basis for Action of the External Chaperone for a Propeptide-deficient Serine Protease from Aeromonas sobria.
J.Biol.Chem., 290, 2015
1DET
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BU of 1det by Molmil
RIBONUCLEASE T1 CARBOXYMETHYLATED AT GLU 58 IN COMPLEX WITH 2'GMP
Descriptor: GUANOSINE-2'-MONOPHOSPHATE, RIBONUCLEASE T1, SODIUM ION
Authors:Ishikawa, K, Suzuki, E, Tanokura, M, Takahashi, K.
Deposit date:1996-02-20
Release date:1996-07-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of ribonuclease T1 carboxymethylated at Glu58 in complex with 2'-GMP.
Biochemistry, 35, 1996
1IYY
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BU of 1iyy by Molmil
NMR STRUCTURE OF Gln25-RIBONUCLEASE T1, 24 STRUCTURES
Descriptor: RIBONUCLEASE T1
Authors:Hatano, K, Kojima, M, Suzuki, E, Tanokura, M, Takahashi, K.
Deposit date:2002-09-12
Release date:2003-10-07
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Determination of the NMR structure of Gln25-ribonuclease T1.
Biol. Chem., 384, 2003
4TMC
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BU of 4tmc by Molmil
CRYSTAL STRUCTURE of OLD YELLOW ENZYME from CANDIDA MACEDONIENSIS AKU4588 COMPLEXED with P-HYDROXYBENZALDEHYDE
Descriptor: FLAVIN MONONUCLEOTIDE, Old yellow enzyme, P-HYDROXYBENZALDEHYDE
Authors:Horita, S, Kataoka, M, Kitamura, N, Nakagawa, T, Miyakawa, T, Ohtsuka, J, Nagata, K, Shimizu, S, Tanokura, M.
Deposit date:2014-05-31
Release date:2015-02-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:An Engineered Old Yellow Enzyme that Enables Efficient Synthesis of (4R,6R)-Actinol in a One-Pot Reduction System
Chembiochem, 16, 2015
4TMB
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CRYSTAL STRUCTURE of OLD YELLOW ENZYME from CANDIDA MACEDONIENSIS AKU4588
Descriptor: FLAVIN MONONUCLEOTIDE, Old yellow enzyme
Authors:Horita, S, Kataoka, M, Kitamura, N, Nakagawa, T, Miyakawa, T, Ohtsuka, J, Nagata, K, Shimizu, S, Tanokura, M.
Deposit date:2014-05-31
Release date:2015-02-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:An Engineered Old Yellow Enzyme that Enables Efficient Synthesis of (4R,6R)-Actinol in a One-Pot Reduction System
Chembiochem, 16, 2015
4QLX
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BU of 4qlx by Molmil
Crystal structure of CLA-ER with product binding
Descriptor: 10-oxooctadecanoic acid, CHLORIDE ION, FLAVIN MONONUCLEOTIDE, ...
Authors:Hou, F, Miyakawa, T, Tanokura, M.
Deposit date:2014-06-13
Release date:2015-02-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure and reaction mechanism of a novel enone reductase.
Febs J., 282, 2015
4QLY
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BU of 4qly by Molmil
Crystal structure of CLA-ER, a novel enone reductase catalyzing a key step of a gut-bacterial fatty acid saturation metabolism, biohydrogenation
Descriptor: Enone reductase CLA-ER, FLAVIN MONONUCLEOTIDE
Authors:Hou, F, Miyakawa, T, Tanokura, M.
Deposit date:2014-06-13
Release date:2015-02-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.005 Å)
Cite:Structure and reaction mechanism of a novel enone reductase.
Febs J., 282, 2015
1EQK
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BU of 1eqk by Molmil
SOLUTION STRUCTURE OF ORYZACYSTATIN-I, A CYSTEINE PROTEINASE INHIBITOR OF THE RICE, ORYZA SATIVA L. JAPONICA
Descriptor: ORYZACYSTATIN-I
Authors:Nagata, K, Kudo, N, Abe, K, Arai, S, Tanokura, M.
Deposit date:2000-04-05
Release date:2001-01-10
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of oryzacystatin-I, a cysteine proteinase inhibitor of the rice, Oryza sativa L. japonica.
Biochemistry, 39, 2000
1F5V
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BU of 1f5v by Molmil
STRUCTURE AND SITE-DIRECTED MUTAGENESIS OF A FLAVOPROTEIN FROM ESCHERICHIA COLI THAT REDUCES NITROCOMPOUNDS. ALTERATION OF PYRIDINE NUCLEOTIDE BINDING BY A SINGLE AMINO ACID SUBSTITUTION
Descriptor: FLAVIN MONONUCLEOTIDE, OXYGEN-INSENSITIVE NADPH NITROREDUCTASE
Authors:Kobori, T, Sasaki, H, Lee, W.C, Zenno, S, Saigo, K, Murphy, M.E.P, Tanokura, M.
Deposit date:2000-06-17
Release date:2001-02-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure and site-directed mutagenesis of a flavoprotein from Escherichia coli that reduces nitrocompounds: alteration of pyridine nucleotide binding by a single amino acid substitution.
J.Biol.Chem., 276, 2001
3JRS
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BU of 3jrs by Molmil
Crystal structure of (+)-ABA-bound PYL1
Descriptor: (2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid, Putative uncharacterized protein At5g46790
Authors:Miyazono, K, Miyakawa, T, Sawano, Y, Kubota, K, Tanokura, M.
Deposit date:2009-09-08
Release date:2009-11-03
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural basis of abscisic acid signalling
Nature, 462, 2009
3JRQ
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BU of 3jrq by Molmil
Crystal structure of (+)-ABA-bound PYL1 in complex with ABI1
Descriptor: (2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid, Protein phosphatase 2C 56, Putative uncharacterized protein At5g46790
Authors:Miyazono, K, Miyakawa, T, Sawano, Y, Kubota, K, Tanokura, M.
Deposit date:2009-09-08
Release date:2009-11-03
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis of abscisic acid signalling
Nature, 462, 2009
2RR7
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BU of 2rr7 by Molmil
Microtubule Binding Domain of DYNEIN-C
Descriptor: Dynein heavy chain 9
Authors:Kato, Y, Yagi, T, Ohki, S, Burgess, S, Honda, S, Kamiya, R, Tanokura, M.
Deposit date:2010-06-04
Release date:2011-06-08
Last modified:2015-09-09
Method:SOLUTION NMR
Cite:Structure of the microtubule-binding domain of flagellar dynein
Structure, 22, 2014
1IX5
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BU of 1ix5 by Molmil
Solution structure of the Methanococcus thermolithotrophicus FKBP
Descriptor: FKBP
Authors:Suzuki, R, Nagata, K, Kawakami, M, Nemoto, N, Furutani, M, Adachi, K, Maruyama, T, Tanokura, M.
Deposit date:2002-06-12
Release date:2003-06-10
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Three-dimensional Solution Structure of an Archaeal FKBP with a Dual Function of Peptidyl Prolyl cis-trans Isomerase and Chaperone-like Activities
J.MOL.BIOL., 328, 2003
5GWT
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BU of 5gwt by Molmil
4-hydroxyisoleucine dehydrogenase mutant complexed with NADH and succinate
Descriptor: 4-hydroxyisolecuine dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SUCCINIC ACID
Authors:Shi, X, Miyakawa, T, Nakamura, A, Tanokura, M.
Deposit date:2016-09-13
Release date:2017-10-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Engineering a short-chain dehydrogenase/reductase for the stereoselective production of (2S,3R,4S)-4-hydroxyisoleucine with three asymmetric centers.
Sci Rep, 7, 2017
5GWR
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BU of 5gwr by Molmil
4-hydroxyisoleucine dehydrogenase complexed with NADH
Descriptor: 1,2-ETHANEDIOL, 4-hydroxyisolecuine dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Shi, X, Miyakawa, T, Nakamura, A, Tanokura, M.
Deposit date:2016-09-13
Release date:2017-10-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Engineering a short-chain dehydrogenase/reductase for the stereoselective production of (2S,3R,4S)-4-hydroxyisoleucine with three asymmetric centers
Sci Rep, 7, 2017
5GWS
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BU of 5gws by Molmil
4-hydroxyisoleucine dehydrogenase complexed with NADH and succinate
Descriptor: 4-hydroxyisolecuine dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SUCCINIC ACID
Authors:Shi, X, Miyakawa, T, Nakamura, A, Tanokura, M.
Deposit date:2016-09-13
Release date:2017-10-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Engineering a short-chain dehydrogenase/reductase for the stereoselective production of (2S,3R,4S)-4-hydroxyisoleucine with three asymmetric centers.
Sci Rep, 7, 2017
2GXG
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BU of 2gxg by Molmil
Crystal structure of EmrR homolog from hyperthermophilic archaea Sulfolobus tokodaii strain7
Descriptor: 146aa long hypothetical transcriptional regulator
Authors:Miyazono, K, Tsujimura, M, Kawarabayasi, Y, Tanokura, M.
Deposit date:2006-05-08
Release date:2007-03-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal structure of archaeal homolog of multi drug resistance repressor protein, EmrR, from hyperthermophilic archaea Sulfolobus tokodaii strain7
To be Published
1ION
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BU of 1ion by Molmil
THE SEPTUM SITE-DETERMINING PROTEIN MIND COMPLEXED WITH MG-ADP FROM PYROCOCCUS HORIKOSHII OT3
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PROBABLE CELL DIVISION INHIBITOR MIND
Authors:Sakai, N, Yao, M, Itou, H, Watanabe, N, Yumoto, F, Tanokura, M, Tanaka, I.
Deposit date:2001-03-21
Release date:2001-09-26
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The three-dimensional structure of septum site-determining protein MinD from Pyrococcus horikoshii OT3 in complex with Mg-ADP.
Structure, 9, 2001

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