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1C4L
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BU of 1c4l by Molmil
SOLUTION STRUCTURE OF AN RNA DUPLEX INCLUDING A C-U BASE-PAIR
Descriptor: RNA (5'-R(*CP*CP*UP*GP*CP*GP*UP*CP*G)-3'), RNA (5'-R(*CP*GP*AP*CP*UP*CP*AP*GP*G)-3')
Authors:Tanaka, Y, Kojima, C, Yamazaki, T, Kodama, T.S, Yasuno, K, Miyashita, S, Ono, A.M, Ono, A.S, Kainosho, M, Kyogoku, Y.
Deposit date:1999-08-30
Release date:2000-08-09
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of an RNA duplex including a C-U base pair.
Biochemistry, 39, 2000
413D
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A'-FORM RNA DOUBLE HELIX IN THE SINGLE CRYSTAL STRUCTURE OF R(UGAGCUUCGGCUC)
Descriptor: RNA (5'-R(*UP*GP*AP*GP*CP*UP*UP*CP*GP*GP*CP*UP*C)-3')
Authors:Tanaka, Y, Fujii, S, Hiroaki, H, Sakata, T, Tanaka, T, Uesugi, S, Tomita, K.-I, Kyogoku, Y.
Deposit date:1998-07-10
Release date:1998-07-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A'-form RNA double helix in the single crystal structure of r(UGAGCUUCGGCUC).
Nucleic Acids Res., 27, 1999
6R83
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BU of 6r83 by Molmil
CryoEM structure and molecular model of squid hemocyanin (Todarodes pacificus , TpH)
Descriptor: Hemocyanin subunit 1
Authors:Tanaka, Y, Kato, S, Stabrin, M, Raunser, S, Matsui, T, Gatsogiannis, C.
Deposit date:2019-03-31
Release date:2019-05-08
Last modified:2019-11-06
Method:ELECTRON MICROSCOPY (5.1 Å)
Cite:Cryo-EM reveals the asymmetric assembly of squid hemocyanin.
Iucrj, 6, 2019
1J2V
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BU of 1j2v by Molmil
Crystal Structure of CutA1 from Pyrococcus Horikoshii
Descriptor: 102AA long hypothetical periplasmic divalent cation tolerance protein CUTA
Authors:Tanaka, Y, Sakai, N, Yasutake, Y, Yao, M, Tsumoto, K, Kumagai, I, Tanaka, I.
Deposit date:2003-01-11
Release date:2004-01-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural implications for heavy metal-induced reversible assembly and aggregation of a protein: the case of Pyrococcus horikoshii CutA.
Febs Lett., 556, 2004
1J08
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BU of 1j08 by Molmil
Crystal structure of glutaredoxin-like protein from Pyrococcus horikoshii
Descriptor: glutaredoxin-like protein
Authors:Tanaka, Y, Tanabe, E, Tsumoto, K, Kumagai, I, Yao, M, Tanaka, I.
Deposit date:2002-11-11
Release date:2003-05-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Protein disulfide isomerase from hyperthermophile as an additives of refolding of an immunoglobulin-folded protein
To be Published
5AWW
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BU of 5aww by Molmil
Precise Resting State of Thermus thermophilus SecYEG
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Protein translocase subunit SecE, Protein translocase subunit SecY, ...
Authors:Tanaka, Y, Sugano, Y, Takemoto, M, Kusakizako, T, Kumazaki, K, Ishitani, R, Nureki, O, Tsukazaki, T.
Deposit date:2015-07-10
Release date:2015-11-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.724 Å)
Cite:Crystal Structures of SecYEG in Lipidic Cubic Phase Elucidate a Precise Resting and a Peptide-Bound State.
Cell Rep, 13, 2015
5CH4
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BU of 5ch4 by Molmil
Peptide-Bound State of Thermus thermophilus SecYEG
Descriptor: Protein translocase subunit SecE, Protein translocase subunit SecY, Putative preprotein translocase, ...
Authors:Tanaka, Y, Sugano, Y, Takemoto, M, Kusakizako, T, Kumazaki, K, Ishitani, R, Nureki, O, Tsukazaki, T.
Deposit date:2015-07-10
Release date:2015-11-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.64 Å)
Cite:Crystal Structures of SecYEG in Lipidic Cubic Phase Elucidate a Precise Resting and a Peptide-Bound State.
Cell Rep, 13, 2015
1UKU
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BU of 1uku by Molmil
Crystal Structure of Pyrococcus horikoshii CutA1 Complexed with Cu2+
Descriptor: COPPER (II) ION, periplasmic divalent cation tolerance protein CutA
Authors:Tanaka, Y, Yasutake, Y, Yao, M, Sakai, N, Tanaka, I, Tsumoto, K, Kumagai, I.
Deposit date:2003-09-01
Release date:2004-01-13
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural implications for heavy metal-induced reversible assembly and aggregation of a protein: the case of Pyrococcus horikoshii CutA.
Febs Lett., 556, 2004
1UMJ
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BU of 1umj by Molmil
Crystal structure of Pyrococcus horikoshii CutA in the presence of 3M guanidine hydrochloride
Descriptor: GUANIDINE, periplasmic divalent cation tolerance protein CutA
Authors:Tanaka, Y, Tsumoto, K, Yasutake, Y, Sakai, N, Yao, M, Tanaka, I, Kumagai, I.
Deposit date:2003-10-02
Release date:2004-10-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural evidence for guanidine-protein side chain interactions: crystal structure of CutA from Pyrococcus horikoshii in 3M guanidine hydrochloride
Biochem.Biophys.Res.Commun., 323, 2004
1VBF
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BU of 1vbf by Molmil
Crystal structure of protein L-isoaspartate O-methyltransferase homologue from Sulfolobus tokodaii
Descriptor: 231aa long hypothetical protein-L-isoaspartate O-methyltransferase
Authors:Tanaka, Y, Tsumoto, K, Yasutake, Y, Umetsu, M, Yao, M, Tanaka, I, Fukada, H, Kumagai, I.
Deposit date:2004-02-25
Release date:2004-08-10
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:How Oligomerization Contributes to the Thermostability of an Archaeon Protein: PROTEIN L-ISOASPARTYL-O-METHYLTRANSFERASE FROM SULFOLOBUS TOKODAII
J.Biol.Chem., 279, 2004
1WV3
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BU of 1wv3 by Molmil
Crystal structure of N-terminal domain of hypothetical protein SAV0287 from Staphylococcus aureus
Descriptor: CHLORIDE ION, similar to DNA segregation ATPase and related proteins
Authors:Tanaka, Y, Yasutake, Y, Tanaka, I.
Deposit date:2004-12-10
Release date:2005-12-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure analysis reveals a novel forkhead-associated domain of ESAT-6 secretion system C protein in Staphylococcus aureus.
Proteins, 69, 2007
2DSO
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BU of 2dso by Molmil
Crystal structure of D138N mutant of Drp35, a 35kDa drug responsive protein from Staphylococcus aureus
Descriptor: CALCIUM ION, Drp35, GLYCEROL
Authors:Tanaka, Y, Ohki, Y, Morikawa, K, Yao, M, Watanabe, N, Ohta, T, Tanaka, I.
Deposit date:2006-07-04
Release date:2006-12-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and Mutational Analyses of Drp35 from Staphylococcus aureus: A POSSIBLE MECHANISM FOR ITS LACTONASE ACTIVITY
J.Biol.Chem., 282, 2007
2DG0
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BU of 2dg0 by Molmil
Crystal structure of Drp35, a 35kDa drug responsive protein from Staphylococcus aureus
Descriptor: DrP35
Authors:Tanaka, Y, Ohki, Y, Morikawa, K, Yao, M, Watanabe, N, Ohta, T, Tanaka, I.
Deposit date:2006-03-07
Release date:2006-12-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural and Mutational Analyses of Drp35 from Staphylococcus aureus: A POSSIBLE MECHANISM FOR ITS LACTONASE ACTIVITY
J.Biol.Chem., 282, 2007
2DG1
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BU of 2dg1 by Molmil
Crystal structure of Drp35, a 35kDa drug responsive protein from Staphylococcus aureus, complexed with Ca2+
Descriptor: CALCIUM ION, DrP35, GLYCEROL
Authors:Tanaka, Y, Ohki, Y, Morikawa, K, Yao, M, Watanabe, N, Ohta, T, Tanaka, I.
Deposit date:2006-03-07
Release date:2006-12-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Structural and Mutational Analyses of Drp35 from Staphylococcus aureus: A POSSIBLE MECHANISM FOR ITS LACTONASE ACTIVITY
J.Biol.Chem., 282, 2007
2DGJ
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BU of 2dgj by Molmil
Crystal structure of EbhA (756-1003 domain) from Staphylococcus aureus
Descriptor: ACETIC ACID, GLYCEROL, SULFATE ION, ...
Authors:Tanaka, Y, Yao, M, Kuroda, M, Watanabe, N, Ohta, T, Tanaka, I.
Deposit date:2006-03-14
Release date:2007-03-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:A helical string of alternately connected three-helix bundles for the cell wall-associated adhesion protein Ebh from Staphylococcus aureus
Structure, 16, 2008
1HLV
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BU of 1hlv by Molmil
CRYSTAL STRUCTURE OF CENP-B(1-129) COMPLEXED WITH THE CENP-B BOX DNA
Descriptor: CENP-B BOX DNA, MAJOR CENTROMERE AUTOANTIGEN B
Authors:Tanaka, Y, Nureki, O, Kurumizaka, H, Fukai, S, Kawaguchi, S, Ikuta, M, Iwahara, J, Okazaki, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2000-12-04
Release date:2002-01-11
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the CENP-B protein-DNA complex: the DNA-binding domains of CENP-B induce kinks in the CENP-B box DNA.
EMBO J., 20, 2001
6LEO
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BU of 6leo by Molmil
Crystal structure of thiosulfate transporter YeeE from Spirochaeta thermophila
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Sulf_transp domain-containing protein, THIOSULFATE
Authors:Tanaka, Y, Tsukazaki, T, Yoshikaie, K, Takeuchi, A, Uchino, S, Sugano, Y.
Deposit date:2019-11-26
Release date:2020-09-02
Last modified:2020-09-30
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:Crystal structure of a YeeE/YedE family protein engaged in thiosulfate uptake.
Sci Adv, 6, 2020
6LEP
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BU of 6lep by Molmil
Crystal structure of thiosulfate transporter YeeE inactive mutant - C91A
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Sulf_transp domain-containing protein, THIOSULFATE
Authors:Tanaka, Y, Tsukazaki, T, Yoshikaie, K, Sugano, Y, Takeuchi, A, Uchino, S.
Deposit date:2019-11-26
Release date:2020-09-02
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of a YeeE/YedE family protein engaged in thiosulfate uptake.
Sci Adv, 6, 2020
1WU7
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BU of 1wu7 by Molmil
Crystal structure of histidyl-tRNA synthetase from Thermoplasma acidophilum
Descriptor: Histidyl-tRNA synthetase
Authors:Tanaka, Y, Sakai, N, Yao, M, Watanabe, N, Tamura, T, Tanaka, I.
Deposit date:2004-12-01
Release date:2005-12-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of histidyl-tRNA synthetase from Thermoplasma acidophilum
To be Published
2DGD
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BU of 2dgd by Molmil
Crystal structure of ST0656, a function unknown protein from Sulfolobus tokodaii
Descriptor: 223aa long hypothetical arylmalonate decarboxylase, GLYCEROL
Authors:Tanaka, Y, Sasaki, T, Tanabe, E, Yao, M, Tanaka, I, Kumagai, I, Tsumoto, K.
Deposit date:2006-03-10
Release date:2007-03-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of ST0656, a function unknown protein from Sulfolobus tokodaii
To be Published
7DQK
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BU of 7dqk by Molmil
A nicotine MATE transporter, Nicotiana tabacum MATE2 (NtMATE2)
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Tanaka, Y, Tsukazaki, T, Sasaki, A, Iwaki, S.
Deposit date:2020-12-24
Release date:2021-06-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Crystal structures of a nicotine MATE transporter provide insight into its mechanism of substrate transport.
Febs Lett., 595, 2021
1WUQ
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BU of 1wuq by Molmil
Structure of GTP cyclohydrolase I Complexed with 8-oxo-GTP
Descriptor: 8-OXO-GUANOSINE-5'-TRIPHOSPHATE, GTP cyclohydrolase I, ZINC ION
Authors:Tanaka, Y, Nakagawa, N, Masui, R, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-12-08
Release date:2005-07-19
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Novel reaction mechanism of GTP cyclohydrolase I. High-resolution X-ray crystallography of Thermus thermophilus HB8 enzyme complexed with a transition state analogue, the 8-oxoguanine derivative
J.Biochem.(Tokyo), 138, 2005
1WM9
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BU of 1wm9 by Molmil
Structure of GTP cyclohydrolase I from Thermus thermophilus HB8
Descriptor: GTP cyclohydrolase I, ZINC ION
Authors:Tanaka, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-07-05
Release date:2005-07-19
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Novel Reaction Mechanism of GTP Cyclohydrolase I. High-Resolution X-Ray Crystallography of Thermus thermophilus HB8 Enzyme Complexed with a Transition State Analogue, the 8-Oxoguanine Derivative.
J.Biochem.(Tokyo), 138, 2005
1WUR
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BU of 1wur by Molmil
Structure of GTP cyclohydrolase I Complexed with 8-oxo-dGTP
Descriptor: 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, GTP cyclohydrolase I, ZINC ION
Authors:Tanaka, Y, Nakagawa, N, Masui, R, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-12-08
Release date:2005-07-19
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Novel reaction mechanism of GTP cyclohydrolase I. High-resolution X-ray crystallography of Thermus thermophilus HB8 enzyme complexed with a transition state analogue, the 8-oxoguanine derivative
J.Biochem.(Tokyo), 138, 2005
2D64
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BU of 2d64 by Molmil
Aspartate Aminotransferase Mutant MABC With Isovaleric Acid
Descriptor: Aspartate aminotransferase, ISOVALERIC ACID, PYRIDOXAL-5'-PHOSPHATE
Authors:Tanaka, Y, Nakagawa, N, Tada, H, Yano, T, Masui, R, Kuramitsu, S.
Deposit date:2005-11-09
Release date:2006-11-14
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:The Structures of Aspartate Aminotransferase with Mutations of Non-Active-Site Residues
To be Published

217705

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