Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
3HLA
DownloadVisualize
BU of 3hla by Molmil
HUMAN CLASS I HISTOCOMPATIBILITY ANTIGEN A2.1
Descriptor: BETA 2-MICROGLOBULIN, CLASS I HISTOCOMPATIBILITY ANTIGEN (HLA-A2.1) (ALPHA CHAIN)
Authors:Saper, M.A, Bjorkman, P.J, Wiley, D.C.
Deposit date:1989-10-06
Release date:1990-04-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Refined structure of the human histocompatibility antigen HLA-A2 at 2.6 A resolution.
J.Mol.Biol., 219, 1991
8EDD
DownloadVisualize
BU of 8edd by Molmil
Staphylococcus aureus endonuclease IV Y33F mutant
Descriptor: CHLORIDE ION, FE (III) ION, PHOSPHATE ION, ...
Authors:Saper, M.A, Kirillov, S, Isupov, M.N, Wiener, R, Rouvinski, A.
Deposit date:2022-09-04
Release date:2023-09-06
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Octahedrally coordinated iron in the catalytic site of endonuclease IV from Staphylococcus aureus
To Be Published
5VAT
DownloadVisualize
BU of 5vat by Molmil
Haemophilus influenzae LpoA: Monoclinic form (Mon2) with 2 molecules per a.u.
Descriptor: Penicillin-binding protein activator LpoA
Authors:Saper, M.A, Sathiyamoorthy, K.
Deposit date:2017-03-27
Release date:2017-09-13
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural analyses of the Haemophilus influenzae peptidoglycan synthase activator LpoA suggest multiple conformations in solution.
J. Biol. Chem., 292, 2017
3P42
DownloadVisualize
BU of 3p42 by Molmil
Structure of GfcC (YmcB), protein encoded by the E. coli group 4 capsule operon
Descriptor: Predicted protein, SULFATE ION
Authors:Saper, M.A, Sathiyamoorthy, K.
Deposit date:2010-10-05
Release date:2011-04-06
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:The Crystal Structure of Escherichia coli Group 4 Capsule Protein GfcC Reveals a Domain Organization Resembling That of Wza.
Biochemistry, 50, 2011
6U2A
DownloadVisualize
BU of 6u2a by Molmil
ShyA endopeptidase from Vibrio cholera (open form)
Descriptor: ShyA endopeptidase, ZINC ION
Authors:Saper, M.A, Kelley, A.
Deposit date:2019-08-19
Release date:2020-05-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis of peptidoglycan endopeptidase regulation.
Proc.Natl.Acad.Sci.USA, 117, 2020
3CKM
DownloadVisualize
BU of 3ckm by Molmil
LpoA (YraM) C-domain from Haemophilus influenzae, a regulator of PBP1A
Descriptor: BETA-MERCAPTOETHANOL, SULFATE ION, YRAM (HI1655)
Authors:Vijayalakshmi, J, Saper, M.A.
Deposit date:2008-03-16
Release date:2008-05-13
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structure of YraM, a protein essential for growth of Haemophilus influenzae.
Proteins, 73, 2008
5KCN
DownloadVisualize
BU of 5kcn by Molmil
Crystal Structure of full-length LpoA from Haemophilus influenzae at 1.97 angstrom resolution
Descriptor: CHLORIDE ION, Penicillin-binding protein activator LpoA
Authors:Sathiyamoorthy, K, Saper, M.A.
Deposit date:2016-06-06
Release date:2017-09-13
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.965 Å)
Cite:Structural analyses of the Haemophilus influenzae peptidoglycan synthase activator LpoA suggest multiple conformations in solution.
J. Biol. Chem., 292, 2017
4P29
DownloadVisualize
BU of 4p29 by Molmil
Crystal structure of the LpoA N-terminal domain from Haemophilus influenzae
Descriptor: CHLORIDE ION, GLYCEROL, LpoA, ...
Authors:Vijayalakshmi, J, Saper, M.A.
Deposit date:2014-03-02
Release date:2015-03-04
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.95006478 Å)
Cite:Structural analyses of theHaemophilus influenzaepeptidoglycan synthase activator LpoA suggest multiple conformations in solution.
J.Biol.Chem., 292, 2017
6DR3
DownloadVisualize
BU of 6dr3 by Molmil
Crystal structure of E. coli LpoA amino terminal domain
Descriptor: Penicillin-binding protein activator LpoA
Authors:Kelley, A.C, Saper, M.A.
Deposit date:2018-06-11
Release date:2019-05-08
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.101 Å)
Cite:Crystal structures of the amino-terminal domain of LpoA from Escherichia coli and Haemophilus influenzae.
Acta Crystallogr.,Sect.F, 75, 2019
6DCJ
DownloadVisualize
BU of 6dcj by Molmil
LpoA N-terminal domain from Haemophilus influenzae; monoclinic form at 1.35 A resolution
Descriptor: CHLORIDE ION, Penicillin-binding protein activator LpoA
Authors:Vijayalakshmi, J, Saper, M.A.
Deposit date:2018-05-07
Release date:2019-05-01
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Crystal structures of the amino-terminal domain of LpoA from Escherichia coli and Haemophilus influenzae.
Acta Crystallogr.,Sect.F, 75, 2019
8AXY
DownloadVisualize
BU of 8axy by Molmil
Staphylococcus aureus endonuclease IV orthorhombic crystal form
Descriptor: FE (III) ION, Probable endonuclease 4, SULFATE ION, ...
Authors:Rouvinski, A, Kirillov, S, Saper, M.A, Wiener, R, Isupov, M.N.
Deposit date:2022-09-01
Release date:2023-09-13
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Octahedrally coordinated iron in the catalytic site of endonuclease IV from Staphylococcus aureus
To Be Published
1YTW
DownloadVisualize
BU of 1ytw by Molmil
YERSINIA PTPASE COMPLEXED WITH TUNGSTATE
Descriptor: SULFATE ION, TUNGSTATE(VI)ION, YERSINIA PROTEIN TYROSINE PHOSPHATASE
Authors:Fauman, E.B, Schubert, H.L, Saper, M.A.
Deposit date:1996-05-01
Release date:1996-11-08
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The X-ray crystal structures of Yersinia tyrosine phosphatase with bound tungstate and nitrate. Mechanistic implications.
J.Biol.Chem., 271, 1996
1YTN
DownloadVisualize
BU of 1ytn by Molmil
HYDROLASE
Descriptor: NITRATE ION, YERSINIA PROTEIN TYROSINE PHOSPHATASE
Authors:Yuvaniyama, C, Fauman, E.B, Saper, M.A.
Deposit date:1996-05-01
Release date:1996-11-08
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The X-ray crystal structures of Yersinia tyrosine phosphatase with bound tungstate and nitrate. Mechanistic implications.
J.Biol.Chem., 271, 1996
2HLA
DownloadVisualize
BU of 2hla by Molmil
SPECIFICITY POCKETS FOR THE SIDE CHAINS OF PEPTIDE ANTIGENS IN HLA-AW68
Descriptor: BETA 2-MICROGLOBULIN, CLASS I HISTOCOMPATIBILITY ANTIGEN (HLA-Aw68)
Authors:Garrett, T.P.J, Saper, M.A, Wiley, D.C.
Deposit date:1989-10-05
Release date:1990-04-15
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Specificity pockets for the side chains of peptide antigens in HLA-Aw68.
Nature, 342, 1989
5VBG
DownloadVisualize
BU of 5vbg by Molmil
Crystal Structure of full-length LpoA, Monoclinic form 1, from Haemophilus influenzae
Descriptor: CHLORIDE ION, Penicillin-binding protein activator LpoA
Authors:Sathiyamoorthy, K, Saper, M.A.
Deposit date:2017-03-29
Release date:2017-09-13
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural analyses of the Haemophilus influenzae peptidoglycan synthase activator LpoA suggest multiple conformations in solution.
J. Biol. Chem., 292, 2017
1YTS
DownloadVisualize
BU of 1yts by Molmil
A LIGAND-INDUCED CONFORMATIONAL CHANGE IN THE YERSINIA PROTEIN TYROSINE PHOSPHATASE
Descriptor: SULFATE ION, YERSINIA PROTEIN TYROSINE PHOSPHATASE
Authors:Schubert, H.L, Stuckey, J.A, Fauman, E.B, Dixon, J.E, Saper, M.A.
Deposit date:1995-04-07
Release date:1995-07-10
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A ligand-induced conformational change in the Yersinia protein tyrosine phosphatase.
Protein Sci., 4, 1995
2I42
DownloadVisualize
BU of 2i42 by Molmil
Crystal structure of Yersinia protein tyrosine phosphatase complexed with vanadate, a transition state analogue
Descriptor: Tyrosine-protein phosphatase, VANADATE ION
Authors:Vijayalakshmi, J, Saper, M.A.
Deposit date:2006-08-21
Release date:2006-09-19
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of Yersinia protein tyrosine phosphatase complexed with vanadate, a transition state analogue
To be Published
2LIV
DownloadVisualize
BU of 2liv by Molmil
PERIPLASMIC BINDING PROTEIN STRUCTURE AND FUNCTION. REFINED X-RAY STRUCTURES OF THE LEUCINE/ISOLEUCINE/VALINE-BINDING PROTEIN AND ITS COMPLEX WITH LEUCINE
Descriptor: LEUCINE
Authors:Sack, J.S, Saper, M.A, Quiocho, F.A.
Deposit date:1989-04-10
Release date:1989-07-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Periplasmic binding protein structure and function. Refined X-ray structures of the leucine/isoleucine/valine-binding protein and its complex with leucine.
J.Mol.Biol., 206, 1989
1VHR
DownloadVisualize
BU of 1vhr by Molmil
HUMAN VH1-RELATED DUAL-SPECIFICITY PHOSPHATASE
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, HUMAN VH1-RELATED DUAL-SPECIFICITY PHOSPHATASE VHR, SULFATE ION
Authors:Yuvaniyama, J, Denu, J.M, Dixon, J.E, Saper, M.A.
Deposit date:1996-02-20
Release date:1996-06-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of the dual specificity protein phosphatase VHR.
Science, 272, 1996
6PK3
DownloadVisualize
BU of 6pk3 by Molmil
Alanine-glyoxylate aminotransferase 1 (AGT1) from Arabidopsis thaliana
Descriptor: CHLORIDE ION, FORMIC ACID, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Liepman, A.H, Saper, M.A.
Deposit date:2019-06-28
Release date:2019-10-23
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Crystal Structure Of Photorespiratory Alanine:Glyoxylate Aminotransferase 1 (AGT1) FromArabidopsis thaliana.
Front Plant Sci, 10, 2019
6PK1
DownloadVisualize
BU of 6pk1 by Molmil
Alanine-glyoxylate aminotransferase 1 (AGT1) from Arabidopsis thaliana in presence of serine
Descriptor: 3-HYDROXYPYRUVIC ACID, PYRIDOXAL-5'-PHOSPHATE, Serine--glyoxylate aminotransferase
Authors:Liepman, A.H, Saper, M.A.
Deposit date:2019-06-28
Release date:2019-10-23
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure Of Photorespiratory Alanine:Glyoxylate Aminotransferase 1 (AGT1) FromArabidopsis thaliana.
Front Plant Sci, 10, 2019
1M0V
DownloadVisualize
BU of 1m0v by Molmil
NMR STRUCTURE OF THE TYPE III SECRETORY DOMAIN OF YERSINIA YOPH COMPLEXED WITH THE SKAP-HOM PHOSPHO-PEPTIDE N-acetyl-DEpYDDPF-NH2
Descriptor: PROTEIN-TYROSINE PHOSPHATASE YOPH, SKAP55 homologue
Authors:Khandelwal, P, Keliikuli, K, Smith, C.L, Saper, M.A, Zuiderweg, E.R.P.
Deposit date:2002-06-14
Release date:2002-07-24
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution structure and phosphopeptide binding to the N-terminal domain of Yersinia YopH: comparison with a crystal structure
Biochemistry, 41, 2002
1YPT
DownloadVisualize
BU of 1ypt by Molmil
CRYSTAL STRUCTURE OF YERSINIA PROTEIN TYROSINE PHOSPHATASE AT 2.5 ANGSTROMS AND THE COMPLEX WITH TUNGSTATE
Descriptor: PROTEIN-TYROSINE PHOSPHATASE YERSINIA (CATALYTIC DOMAIN)
Authors:Stuckey, J.A, Schubert, H.L, Fauman, E.B, Zhang, Z.-Y, Dixon, J.E, Saper, M.A.
Deposit date:1994-09-16
Release date:1994-12-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of Yersinia protein tyrosine phosphatase at 2.5 A and the complex with tungstate.
Nature, 370, 1994
1XXP
DownloadVisualize
BU of 1xxp by Molmil
Yersinia YopH (residues 163-468) C403S binds phosphotyrosyl peptide at two sites
Descriptor: Hexapeptide ASP-ALA-ASP-GLU-PTR-CLE, Protein-tyrosine phosphatase yopH
Authors:Ivanov, M.I, Stuckey, J.A, Schubert, H.L, Saper, M.A, Bliska, J.B.
Deposit date:2004-11-07
Release date:2005-03-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (3 Å)
Cite:Two substrate-targeting sites in the Yersinia protein tyrosine phosphatase co-operate to promote bacterial virulence
Mol.Microbiol., 55, 2005
1XXV
DownloadVisualize
BU of 1xxv by Molmil
Yersinia YopH (residues 163-468) binds phosphonodifluoromethyl-Phe containing hexapeptide at two sites
Descriptor: Epidermal growth factor receptor derived peptide, Protein-tyrosine phosphatase yopH
Authors:Ivanov, M.I, Stuckey, J.A, Schubert, H.L, Saper, M.A, Bliska, J.B.
Deposit date:2004-11-08
Release date:2005-03-22
Last modified:2011-09-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Two substrate-targeting sites in the Yersinia protein tyrosine phosphatase co-operate to promote bacterial virulence
Mol.Microbiol., 55, 2005

 

12>

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon