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4V6T
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BU of 4v6t by Molmil
Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Ramrath, D.J.F, Yamamoto, H, Rother, K, Wittek, D, Pech, M, Mielke, T, Loerke, J, Scheerer, P, Ivanov, P, Teraoka, Y, Shpanchenko, O, Nierhaus, K.H, Spahn, C.M.T.
Deposit date:2012-01-27
Release date:2014-07-09
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (8.3 Å)
Cite:The complex of tmRNA-SmpB and EF-G on translocating ribosomes.
Nature, 485, 2012
4UJE
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BU of 4uje by Molmil
Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement
Descriptor: 18S Ribosomal RNA, 28S Ribosomal RNA, 40S RIBOSOMAL PROTEIN S10, ...
Authors:Budkevich, T.V, Giesebrecht, J, Behrmann, E, Loerke, J, Ramrath, D.J.F, Mielke, T, Ismer, J, Hildebrand, P, Tung, C.-S, Nierhaus, K.H, Sanbonmatsu, K.Y, Spahn, C.M.T.
Deposit date:2014-04-05
Release date:2014-07-16
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (6.9 Å)
Cite:Regulation of the Mammalian Elongation Cycle by Subunit Rolling: A Eukaryotic-Specific Ribosome Rearrangement.
Cell(Cambridge,Mass.), 158, 2014
3DEG
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BU of 3deg by Molmil
Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNP
Descriptor: 30S RNA helix 14, 30S RNA helix 8, 30S ribosomal protein S12, ...
Authors:Connell, S.R, Topf, M, Qin, Y, Wilson, D.N, Mielke, T, Fucini, P, Nierhaus, K.H, Spahn, C.M.T.
Deposit date:2008-06-10
Release date:2008-08-19
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (10.9 Å)
Cite:A new tRNA intermediate revealed on the ribosome during EF4-mediated back-translocation
Nat.Struct.Mol.Biol., 15, 2008
1FCW
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BU of 1fcw by Molmil
TRNA POSITIONS DURING THE ELONGATION CYCLE
Descriptor: TRNAPHE
Authors:Agrawal, R.K, Spahn, C.M.T, Penczek, P, Grassucci, R.A, Nierhaus, K.H, Frank, J.
Deposit date:2000-07-19
Release date:2000-08-11
Last modified:2024-02-07
Method:ELECTRON MICROSCOPY (17 Å)
Cite:Visualization of tRNA movements on the Escherichia coli 70S ribosome during the elongation cycle.
J.Cell Biol., 150, 2000
4CXH
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BU of 4cxh by Molmil
Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement
Descriptor: 18S RRNA - H44, 18S RRNA - H5-H14, 18S RRNA - H8, ...
Authors:Budkevich, T.V, Giesebrecht, J, Behrmann, E, Loerke, J, Ramrath, D.J.F, Mielke, T, Ismer, J, Hildebrand, P, Tung, C.-S, Nierhaus, K.H, Sanbonmatsu, K.Y, Spahn, C.M.T.
Deposit date:2014-04-07
Release date:2014-07-16
Last modified:2019-06-26
Method:ELECTRON MICROSCOPY (8.9 Å)
Cite:Regulation of the Mammalian Elongation Cycle by Subunit Rolling: A Eukaryotic-Specific Ribosome Rearrangement.
Cell(Cambridge,Mass.), 158, 2014
4CXG
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BU of 4cxg by Molmil
Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement
Descriptor: 18S RRNA - H44, 18S RRNA - H5-H14, 18S RRNA - H8, ...
Authors:Budkevich, T.V, Giesebrecht, J, Behrmann, E, Loerke, J, Ramrath, D.J.F, Mielke, T, Ismer, J, Hildebrand, P, Tung, C.-S, Nierhaus, K.H, Sanbonmatsu, K.Y, Spahn, C.M.T.
Deposit date:2014-04-07
Release date:2014-07-16
Last modified:2019-06-26
Method:ELECTRON MICROSCOPY (8.7 Å)
Cite:Regulation of the Mammalian Elongation Cycle by Subunit Rolling: A Eukaryotic-Specific Ribosome Rearrangement.
Cell(Cambridge,Mass.), 158, 2014
1JQT
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BU of 1jqt by Molmil
Fitting of L11 protein in the low resolution cryo-EM map of E.coli 70S ribosome
Descriptor: 50S Ribosomal protein L11
Authors:Agrawal, R.K, Linde, J, Segupta, J, Nierhaus, K.H, Frank, J.
Deposit date:2001-08-07
Release date:2001-09-07
Last modified:2024-02-07
Method:ELECTRON MICROSCOPY (18 Å)
Cite:Localization of L11 protein on the ribosome and elucidation of its involvement in EF-G-dependent translocation.
J.Mol.Biol., 311, 2001
1JQM
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BU of 1jqm by Molmil
Fitting of L11 protein and elongation factor G (EF-G) in the cryo-em map of e. coli 70S ribosome bound with EF-G, GDP and fusidic acid
Descriptor: 50S Ribosomal protein L11, Elongation Factor G
Authors:Agrawal, R.K, Linde, J, Segupta, J, Nierhaus, K.H, Frank, J.
Deposit date:2001-08-07
Release date:2001-09-07
Last modified:2024-02-07
Method:ELECTRON MICROSCOPY (18 Å)
Cite:Localization of L11 protein on the ribosome and elucidation of its involvement in EF-G-dependent translocation.
J.Mol.Biol., 311, 2001
1JQS
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BU of 1jqs by Molmil
Fitting of L11 protein and elongation factor G (domain G' and V) in the cryo-em map of E. coli 70S ribosome bound with EF-G and GMPPCP, a nonhydrolysable GTP analog
Descriptor: 50S Ribosomal protein L11, Elongation Factor G
Authors:Agrawal, R.K, Linde, J, Segupta, J, Nierhaus, K.H, Frank, J.
Deposit date:2001-08-07
Release date:2001-09-07
Last modified:2024-02-07
Method:ELECTRON MICROSCOPY (18 Å)
Cite:Localization of L11 protein on the ribosome and elucidation of its involvement in EF-G-dependent translocation.
J.Mol.Biol., 311, 2001
1LU3
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BU of 1lu3 by Molmil
Separate Fitting of the Anticodon Loop Region of tRNA (nucleotide 26-42) in the Low Resolution Cryo-EM Map of an EF-Tu Ternary Complex (GDP and Kirromycin) Bound to E. coli 70S Ribosome
Descriptor: PHENYLALANINE TRANSFER RNA
Authors:Valle, M, Sengupta, J, Swami, N.K, Grassucci, R.A, Burkhardt, N, Nierhaus, K.H, Agrawal, R.K, Frank, J.
Deposit date:2002-05-21
Release date:2002-06-26
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (16.799999 Å)
Cite:Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process.
EMBO J., 21, 2002
1LS2
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BU of 1ls2 by Molmil
Fitting of EF-Tu and tRNA in the Low Resolution Cryo-EM Map of an EF-Tu Ternary Complex (GDP and Kirromycin) Bound to E. coli 70S Ribosome
Descriptor: Elongation Factor Tu, Phenylalanine transfer RNA
Authors:Valle, M, Sengupta, J, Swami, N.K, Grassucci, R.A, Burkhardt, N, Nierhaus, K.H, Agrawal, R.K, Frank, J.
Deposit date:2002-05-16
Release date:2002-06-26
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (16.799999 Å)
Cite:Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process.
EMBO J., 21, 2002
6GBZ
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BU of 6gbz by Molmil
50S ribosomal subunit assembly intermediate state 5
Descriptor: 23S ribosomal RNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ...
Authors:Nikolay, R, Hilal, T, Qin, B, Loerke, J, Buerger, J, Mielke, T, Spahn, C.M.T.
Deposit date:2018-04-16
Release date:2018-06-20
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural Visualization of the Formation and Activation of the 50S Ribosomal Subunit during In Vitro Reconstitution.
Mol. Cell, 70, 2018
2HHH
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BU of 2hhh by Molmil
Crystal structure of kasugamycin bound to the 30S ribosomal subunit
Descriptor: (1S,2R,3S,4R,5S,6S)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL 2-AMINO-4-{[CARBOXY(IMINO)METHYL]AMINO}-2,3,4,6-TETRADEOXY-ALPHA-D-ARABINO-HEXOPYRANOSIDE, 16S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Schluenzen, F.
Deposit date:2006-06-28
Release date:2006-09-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.35 Å)
Cite:The antibiotic kasugamycin mimics mRNA nucleotides to destabilize tRNA binding and inhibit canonical translation initiation.
Nat.Struct.Mol.Biol., 13, 2006
3J0L
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BU of 3j0l by Molmil
Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1
Descriptor: 40S ribosomal RNA fragment, 60S ribosomal RNA fragment, Ribosomal protein L10, ...
Authors:Budkevich, T, Giesebrecht, J, Altman, R, Munro, J, Mielke, T, Nierhaus, K, Blanchard, S, Spahn, C.M.
Deposit date:2011-10-04
Release date:2011-11-16
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (9.8 Å)
Cite:Structure and dynamics of the Mammalian ribosomal pretranslocation complex.
Mol.Cell, 44, 2011
3J0O
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BU of 3j0o by Molmil
Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9A cryo-EM map: classic PRE state 2
Descriptor: 40S ribosomal RNA fragment, 60S ribosomal RNA fragment, Ribosomal protein L10a, ...
Authors:Budkevich, T, Giesebrecht, J, Altman, R, Munro, J, Mielke, T, Nierhaus, K, Blanchard, S, Spahn, C.M.
Deposit date:2011-10-05
Release date:2011-11-16
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Structure and dynamics of the Mammalian ribosomal pretranslocation complex.
Mol.Cell, 44, 2011
3J0Q
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BU of 3j0q by Molmil
Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 2
Descriptor: 40S ribosomal RNA fragment, 60S ribosomal RNA fragment, Ribosomal protein L10, ...
Authors:Budkevich, T, Giesebrecht, J, Altman, R, Munro, J, Mielke, T, Nierhaus, K, Blanchard, S, Spahn, C.M.
Deposit date:2011-10-11
Release date:2011-11-16
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (10.6 Å)
Cite:Structure and dynamics of the Mammalian ribosomal pretranslocation complex.
Mol.Cell, 44, 2011
3J0P
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BU of 3j0p by Molmil
Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 1
Descriptor: 40S ribosomal RNA fragment, 60S ribosomal RNA fragment, Ribosomal protein L10a, ...
Authors:Budkevich, T, Giesebrecht, J, Altman, R, Munro, J, Mielke, T, Nierhaus, K, Blanchard, S, Spahn, C.M.
Deposit date:2011-10-06
Release date:2011-11-16
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (10.6 Å)
Cite:Structure and dynamics of the Mammalian ribosomal pretranslocation complex.
Mol.Cell, 44, 2011
6GC8
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BU of 6gc8 by Molmil
50S ribosomal subunit assembly intermediate - 50S rec*
Descriptor: 23S ribosomal RNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ...
Authors:Nikolay, R, Hilal, T, Qin, B, Loerke, J, Buerger, J, Mielke, T, Spahn, C.M.T.
Deposit date:2018-04-17
Release date:2018-06-20
Last modified:2019-12-11
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural Visualization of the Formation and Activation of the 50S Ribosomal Subunit during In Vitro Reconstitution.
Mol. Cell, 70, 2018
6GC4
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BU of 6gc4 by Molmil
50S ribosomal subunit assembly intermediate state 3
Descriptor: 23S ribosomal RNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ...
Authors:Nikolay, R, Hilal, T, Qin, B, Loerke, J, Buerger, J, Mielke, T, Spahn, C.M.T.
Deposit date:2018-04-17
Release date:2018-07-04
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Structural Visualization of the Formation and Activation of the 50S Ribosomal Subunit during In Vitro Reconstitution.
Mol. Cell, 70, 2018
6GC0
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BU of 6gc0 by Molmil
50S ribosomal subunit assembly intermediate state 4
Descriptor: 23S ribosomal RNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ...
Authors:Nikolay, R, Hilal, T, Qin, B, Loerke, J, Buerger, J, Mielke, T, Spahn, C.M.T.
Deposit date:2018-04-16
Release date:2018-06-20
Last modified:2019-12-11
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural Visualization of the Formation and Activation of the 50S Ribosomal Subunit during In Vitro Reconstitution.
Mol. Cell, 70, 2018
6GC7
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BU of 6gc7 by Molmil
50S ribosomal subunit assembly intermediate state 1
Descriptor: 23S ribosomal RNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ...
Authors:Nikolay, R, Hilal, T, Qin, B, Loerke, J, Buerger, J, Mielke, T, Spahn, C.M.T.
Deposit date:2018-04-17
Release date:2018-06-20
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Structural Visualization of the Formation and Activation of the 50S Ribosomal Subunit during In Vitro Reconstitution.
Mol. Cell, 70, 2018
6GC6
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BU of 6gc6 by Molmil
50S ribosomal subunit assembly intermediate state 2
Descriptor: 23S ribosomal RNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ...
Authors:Nikolay, R, Hilal, T, Qin, B, Loerke, J, Buerger, J, Mielke, T, Spahn, C.M.T.
Deposit date:2018-04-17
Release date:2018-07-04
Last modified:2019-12-11
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Structural Visualization of the Formation and Activation of the 50S Ribosomal Subunit during In Vitro Reconstitution.
Mol. Cell, 70, 2018
1ZC8
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BU of 1zc8 by Molmil
Coordinates of tmRNA, SmpB, EF-Tu and h44 fitted into Cryo-EM map of the 70S ribosome and tmRNA complex
Descriptor: Elongation factor Tu, H2 16S rRNA, H2b d mRNA, ...
Authors:Valle, M, Gillet, R, Kaur, S, Henne, A, Ramakrishnan, V, Frank, J.
Deposit date:2005-04-11
Release date:2005-04-19
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (13 Å)
Cite:Visualizing tmRNA Entry into a Stalled Ribosome
Science, 300, 2003
1P9Y
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BU of 1p9y by Molmil
Ribosome binding of E. coli Trigger Factor mutant F44L.
Descriptor: ACETIC ACID, Trigger factor
Authors:Kristensen, O, Gajhede, M.
Deposit date:2003-05-13
Release date:2003-12-16
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Chaperone binding at the ribosomal exit tunnel.
Structure, 11, 2003
1OMS
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BU of 1oms by Molmil
Structure determination by MAD: E.coli Trigger Factor binding at the ribosomal exit tunnel.
Descriptor: GLYCEROL, SULFATE ION, SULFUR DIOXIDE, ...
Authors:Kristensen, O, Gajhede, M.
Deposit date:2003-02-26
Release date:2003-12-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Chaperone binding at the ribosomal exit tunnel.
Structure, 11, 2003

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