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2ZKL
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BU of 2zkl by Molmil
Crystal Structure of capsular polysaccharide assembling protein CapF from staphylococcus aureus
Descriptor: Capsular polysaccharide synthesis enzyme Cap5F, GLYCEROL, ZINC ION
Authors:Miyafusa, T, Tanaka, Y, Yao, M, Tanaka, I, Tsumoto, K.
Deposit date:2008-03-25
Release date:2009-03-31
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Crystal structure of capsular polysaccharide assembling protein from Staphylococcus aureus
to be published
5GW9
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BU of 5gw9 by Molmil
Crystal structure of C163, a backbone circularized G-CSF
Descriptor: Granulocyte colony-stimulating factor
Authors:Miyafusa, T, Honda, S.
Deposit date:2016-09-09
Release date:2017-09-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural insights into the backbone-circularized granulocyte colony-stimulating factor containing a short connector.
Biochem. Biophys. Res. Commun., 500, 2018
4G5H
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BU of 4g5h by Molmil
Crystal structure of capsular polysaccharide synthesizing enzyme CapE from Staphylococcus aureus in complex with by-product
Descriptor: Capsular polysaccharide synthesis enzyme Cap8E, FORMIC ACID, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Miyafusa, T, Caaveiro, J.M.M, Tanaka, Y, Tsumoto, K.
Deposit date:2012-07-18
Release date:2013-08-28
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Dynamic elements govern the catalytic activity of CapE, a capsular polysaccharide-synthesizing enzyme from Staphylococcus aureus.
Febs Lett., 587, 2013
3VHR
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BU of 3vhr by Molmil
Crystal Structure of capsular polysaccharide assembling protein CapF from Staphylococcus aureus in space group C2221
Descriptor: Capsular polysaccharide synthesis enzyme Cap5F, FORMIC ACID, ZINC ION
Authors:Miyafusa, T, Yoshikazu, T, Caaveiro, J.M.M, Tsumoto, K.
Deposit date:2011-09-01
Release date:2012-02-15
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of the enzyme CapF of Staphylococcus aureus reveals a unique architecture composed of two functional domains.
Biochem.J., 443, 2012
3ST7
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BU of 3st7 by Molmil
Crystal Structure of capsular polysaccharide assembling protein CapF from staphylococcus aureus
Descriptor: Capsular polysaccharide synthesis enzyme Cap5F, GLYCEROL, ZINC ION
Authors:Miyafusa, T, Tanaka, Y, Kuroda, M, Yao, M, Watanabe, M, Ohta, T, Tanaka, I, Caaveiro, J.M.M, Tsumoto, K.
Deposit date:2011-07-09
Release date:2012-02-15
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Crystal structure of the enzyme CapF of Staphylococcus aureus reveals a unique architecture composed of two functional domains.
Biochem.J., 443, 2012
3VVB
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BU of 3vvb by Molmil
Crystal Structure of Capsular Polysaccharide Synthesizing Enzyme CapE from Staphylococcus aureus in apo form
Descriptor: CapE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Miyafusa, T, Caaveiro, J.M, Tanaka, Y, Tsumoto, K.
Deposit date:2012-07-18
Release date:2013-06-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of the capsular polysaccharide synthesizing protein CapE of Staphylococcus aureus.
Biosci.Rep., 33, 2013
3VVC
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BU of 3vvc by Molmil
Crystal Structure of Capsular Polysaccharide Synthesizing Enzyme CapE , K126E, in apo form
Descriptor: Capsular polysaccharide synthesis enzyme Cap8E, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, SULFATE ION
Authors:Miyafusa, T, Caaveiro, J.M, Tanaka, Y, Tsumoto, K.
Deposit date:2012-07-18
Release date:2013-06-12
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of the capsular polysaccharide synthesizing protein CapE of Staphylococcus aureus.
Biosci.Rep., 33, 2013
3W1V
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BU of 3w1v by Molmil
Crystal Structure of Capsular Polysaccharide Synthesizing Enzyme CapE from Staphylococcus aureus in complex with inihibitor
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Capsular polysaccharide synthesis enzyme Cap8E, SODIUM ION, ...
Authors:Miyafusa, T, Caaveiro, J.M, Tanaka, Y, Tsumoto, K.
Deposit date:2012-11-21
Release date:2013-06-12
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of the capsular polysaccharide synthesizing protein CapE of Staphylococcus aureus.
Biosci.Rep., 33, 2013
4YRD
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BU of 4yrd by Molmil
Crystal structure of CapF with inhibitor 3-isopropenyl-tropolone
Descriptor: 2-hydroxy-3-(prop-1-en-2-yl)cyclohepta-2,4,6-trien-1-one, Capsular polysaccharide synthesis enzyme Cap5F, ZINC ION
Authors:Nakano, K, Chigira, T, Miyafusa, T, Nagatoishi, S, Caaveiro, J.M.M, Tsumoto, K.
Deposit date:2015-03-15
Release date:2015-10-21
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.44 Å)
Cite:Discovery and characterization of natural tropolones as inhibitors of the antibacterial target CapF from Staphylococcus aureus.
Sci Rep, 5, 2015
5AZ2
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BU of 5az2 by Molmil
Crystal structure of the Fab fragment of 9E5, a murine monoclonal antibody specific for human epiregulin
Descriptor: anti-human epiregulin antibody 9E5 Fab heavy chain, anti-human epiregulin antibody 9E5 Fab light chain
Authors:Kado, Y, Mizohata, E, Nagatoishi, S, Iijima, M, Shinoda, K, Miyafusa, T, Nakayama, T, Yoshizumi, T, Sugiyama, A, Kawamura, T, Lee, Y.H, Matsumura, H, Doi, H, Fujitani, H, Kodama, T, Shibasaki, Y, Tsumoto, K, Inoue, T.
Deposit date:2015-09-16
Release date:2015-12-09
Last modified:2020-02-26
Method:X-RAY DIFFRACTION (1.603 Å)
Cite:Epiregulin Recognition Mechanisms by Anti-epiregulin Antibody 9E5: STRUCTURAL, FUNCTIONAL, AND MOLECULAR DYNAMICS SIMULATION ANALYSES
J.Biol.Chem., 291, 2016
5E8D
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BU of 5e8d by Molmil
Crystal structure of human epiregulin in complex with the Fab fragment of murine monoclonal antibody 9E5
Descriptor: CHLORIDE ION, GLYCEROL, Proepiregulin, ...
Authors:Kado, Y, Mizohata, E, Nagatoishi, S, Iijima, M, Shinoda, K, Miyafusa, T, Nakayama, T, Yoshizumi, T, Sugiyama, A, Kawamura, T, Lee, Y.H, Matsumura, H, Doi, H, Fujitani, H, Kodama, T, Shibasaki, Y, Tsumoto, K, Inoue, T.
Deposit date:2015-10-14
Release date:2015-12-09
Last modified:2020-02-19
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Epiregulin Recognition Mechanisms by Anti-epiregulin Antibody 9E5: STRUCTURAL, FUNCTIONAL, AND MOLECULAR DYNAMICS SIMULATION ANALYSES
J.Biol.Chem., 291, 2016
5ZO6
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BU of 5zo6 by Molmil
Crystal structure of C166, a backbone circularized G-CSF
Descriptor: Granulocyte colony-stimulating factor
Authors:Shibuya, R, Miyafusa, T, Honda, S.
Deposit date:2018-04-12
Release date:2019-04-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Stabilization of backbone-circularized protein is attained by synergistic gains in enthalpy of folded structure and entropy of unfolded structure.
Febs J., 2019
5JYM
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BU of 5jym by Molmil
Human P-cadherin EC12 with scFv TSP11 bound
Descriptor: Antibody scFv TSP11, CALCIUM ION, Cadherin-3
Authors:Caaveiro, J.M.M, Kudo, S, Tsumoto, K.
Deposit date:2016-05-14
Release date:2016-12-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Disruption of cell adhesion by an antibody targeting the cell-adhesive intermediate (X-dimer) of human P-cadherin
Sci Rep, 7, 2017
5JYL
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BU of 5jyl by Molmil
Human P-cadherin MEC1 with scFv TSP7 bound
Descriptor: CHLORIDE ION, Cadherin-3, GLYCEROL, ...
Authors:Caaveiro, J.M.M, Kudo, S, Tsumoto, K.
Deposit date:2016-05-14
Release date:2016-12-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Disruption of cell adhesion by an antibody targeting the cell-adhesive intermediate (X-dimer) of human P-cadherin
Sci Rep, 7, 2017
3VTO
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BU of 3vto by Molmil
The crystal structure of the C-terminal domain of Mu phage central spike
Descriptor: CALCIUM ION, CHLORIDE ION, FE (III) ION, ...
Authors:Harada, K, Yamashita, E, Nakagawa, A, Takeda, S.
Deposit date:2012-06-01
Release date:2013-02-06
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:Crystal structure of the C-terminal domain of Mu phage central spike and functions of bound calcium ion
Biochim.Biophys.Acta, 1834, 2013
3VTN
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BU of 3vtn by Molmil
The crystal structure of the C-terminal domain of Mu phage central spike - Pt derivative for MAD
Descriptor: FE (III) ION, PLATINUM (II) ION, Protein gp45
Authors:Harada, K, Yamashita, E, Nakagawa, A, Takeda, S.
Deposit date:2012-06-01
Release date:2013-02-06
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of the C-terminal domain of Mu phage central spike and functions of bound calcium ion
Biochim.Biophys.Acta, 1834, 2013

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