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1VBH
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BU of 1vbh by Molmil
Pyruvate Phosphate Dikinase with bound Mg-PEP from Maize
Descriptor: MAGNESIUM ION, PHOSPHOENOLPYRUVATE, SULFATE ION, ...
Authors:Nakanishi, T, Nakatsu, T, Matsuoka, M, Sakata, K, Kato, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-02-26
Release date:2005-03-08
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of pyruvate phosphate dikinase from maize revealed an alternative conformation in the swiveling-domain motion
Biochemistry, 44, 2005
1VBG
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BU of 1vbg by Molmil
Pyruvate Phosphate Dikinase from Maize
Descriptor: MAGNESIUM ION, SULFATE ION, pyruvate,orthophosphate dikinase
Authors:Nakanishi, T, Nakatsu, T, Matsuoka, M, Sakata, K, Kato, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-02-26
Release date:2005-03-08
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of pyruvate phosphate dikinase from maize revealed an alternative conformation in the swiveling-domain motion
Biochemistry, 44, 2005
6KU3
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BU of 6ku3 by Molmil
Crystal structure of gibberellin 2-oxidase3 (GA2ox3)in rice
Descriptor: 2-OXOGLUTARIC ACID, GIBBERELLIN A4, GLYCEROL, ...
Authors:Takehara, S, Mikami, B, Sakuraba, S, Matsuoka, M, Ueguchi-Tanaka, M.
Deposit date:2019-08-30
Release date:2020-05-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:A common allosteric mechanism regulates homeostatic inactivation of auxin and gibberellin.
Nat Commun, 11, 2020
6KUN
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BU of 6kun by Molmil
Crystal structure of dioxygenase for auxin oxidation (DAO) in rice
Descriptor: 1H-INDOL-3-YLACETIC ACID, 2-OXOGLUTARIC ACID, 2-oxoglutarate-dependent dioxygenase DAO, ...
Authors:Takehara, S, Mikami, B, Sakuraba, S, Matsuoka, M, Ueguchi-Tanaka, M.
Deposit date:2019-09-02
Release date:2020-05-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.002 Å)
Cite:A common allosteric mechanism regulates homeostatic inactivation of auxin and gibberellin.
Nat Commun, 11, 2020
8I06
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BU of 8i06 by Molmil
Crystal structure of serine acetyltransferase from Salmonella typhimurium complexed with CoA
Descriptor: COENZYME A, CYSTEINE, Serine acetyltransferase
Authors:Toyomoto, T, Ono, K, Shiba, T, Momitani, K, Zhang, T, Tsutsuki, H, Ishikawa, T, Hoso, K, Hamada, K, Rahman, A, Zhong, H, Akaike, T, Yamamoto, K, Matsuoka, M, Hanaoka, K, Niidome, T, Sawa, T.
Deposit date:2023-01-10
Release date:2023-11-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Alkyl gallates inhibit serine O -acetyltransferase in bacteria and enhance susceptibility of drug-resistant Gram-negative bacteria to antibiotics.
Front Microbiol, 14, 2023
8I09
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BU of 8i09 by Molmil
Crystal structure of serine acetyltransferase from Salmonella typhimurium complexed with butyl gallate
Descriptor: CYSTEINE, PHOSPHATE ION, Serine acetyltransferase, ...
Authors:Toyomoto, T, Ono, K, Shiba, T, Momitani, K, Zhang, T, Tsutsuki, H, Ishikawa, T, Hoso, K, Hamada, K, Rahman, A, Zhong, H, Akaike, T, Yamamoto, K, Matsuoka, M, Hanaoka, K, Niidome, T, Sawa, T.
Deposit date:2023-01-10
Release date:2023-11-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Alkyl gallates inhibit serine O -acetyltransferase in bacteria and enhance susceptibility of drug-resistant Gram-negative bacteria to antibiotics.
Front Microbiol, 14, 2023
8I04
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BU of 8i04 by Molmil
Crystal structure of serine acetyltransferase from Salmonella typhimurium complexed with serine
Descriptor: PHOSPHATE ION, SERINE, Serine acetyltransferase
Authors:Toyomoto, T, Ono, K, Shiba, T, Momitani, K, Zhang, T, Tsutsuki, H, Ishikawa, T, Hoso, K, Hamada, K, Rahman, A, Zhong, H, Akaike, T, Yamamoto, K, Matsuoka, M, Hanaoka, K, Niidome, T, Sawa, T.
Deposit date:2023-01-10
Release date:2023-11-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Alkyl gallates inhibit serine O -acetyltransferase in bacteria and enhance susceptibility of drug-resistant Gram-negative bacteria to antibiotics.
Front Microbiol, 14, 2023
3ED1
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BU of 3ed1 by Molmil
Crystal Structure of Rice GID1 complexed with GA3
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, GIBBERELLIN A3, Gibberellin receptor GID1, ...
Authors:Shimada, A, Nakatsu, T, Ueguchi-Tanaka, M, Kato, H, Matsuoka, M.
Deposit date:2008-09-02
Release date:2008-11-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for gibberellin recognition by its receptor GID1.
Nature, 456, 2008
3EBL
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BU of 3ebl by Molmil
Crystal Structure of Rice GID1 complexed with GA4
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, GIBBERELLIN A4, Gibberellin receptor GID1, ...
Authors:Shimada, A, Nakatsu, T, Ueguchi-Tanaka, M, Kato, H, Matsuoka, M.
Deposit date:2008-08-28
Release date:2008-11-25
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for gibberellin recognition by its receptor GID1.
Nature, 456, 2008
3AHA
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BU of 3aha by Molmil
Crystal structure of the complex between gp41 fragments N36 and C34 mutant N126K/E137Q
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, Transmembrane protein gp41
Authors:Izumi, K, Nakamura, S, Nakano, H, Shimura, K, Sakagami, Y, Oishi, S, Uchiyama, S, Ohkubo, T, Kobayashi, Y, Fujii, N, Matsuoka, M, Kodama, E.N.
Deposit date:2010-04-22
Release date:2010-05-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Characterization of HIV-1 resistance to a fusion inhibitor, N36, derived from the gp41 amino terminal heptad repeat.
Antiviral Res., 2010
3WZN
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BU of 3wzn by Molmil
Crystal structure of the core streptavidin mutant V21 (Y22S/N23D/S27D/Y83S/R84K/E101D/R103K/E116N) complexed with biotin at 1.3 A resolution
Descriptor: BIOTIN, SULFATE ION, Streptavidin
Authors:Kawato, T, Mizohata, E, Shimizu, Y, Meshizuka, T, Yamamoto, T, Takasu, N, Matsuoka, M, Matsumura, H, Tsumoto, K, Kodama, T, Kanai, M, Doi, H, Inoue, T, Sugiyama, A.
Deposit date:2014-10-01
Release date:2015-02-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structure-based design of a streptavidin mutant specific for an artificial biotin analogue.
J.Biochem., 157, 2015
3WZP
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BU of 3wzp by Molmil
Crystal structure of the core streptavidin mutant V21 (Y22S/N23D/S27D/Y83S/R84K/E101D/R103K/E116N) complexed with iminobiotin long tail (IMNtail) at 1.2 A resolution
Descriptor: 6-({5-[(2E,3aS,4S,6aR)-2-iminohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}amino)hexanoic acid, GLYCEROL, Streptavidin
Authors:Kawato, T, Mizohata, E, Shimizu, Y, Meshizuka, T, Yamamoto, T, Takasu, N, Matsuoka, M, Matsumura, H, Tsumoto, K, Kodama, T, Kanai, M, Doi, H, Inoue, T, Sugiyama, A.
Deposit date:2014-10-01
Release date:2015-02-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structure-based design of a streptavidin mutant specific for an artificial biotin analogue.
J.Biochem., 157, 2015
3WZQ
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BU of 3wzq by Molmil
Crystal structure of the core streptavidin mutant V212 (Y22S/N23D/S27D/S45N/Y83S/R84K/E101D/R103K/E116N) complexed with iminobiotin long tail (IMNtail) at 1.7 A resolution
Descriptor: 6-({5-[(2E,3aS,4S,6aR)-2-iminohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}amino)hexanoic acid, HEXAETHYLENE GLYCOL, Streptavidin
Authors:Kawato, T, Mizohata, E, Shimizu, Y, Meshizuka, T, Yamamoto, T, Takasu, N, Matsuoka, M, Matsumura, H, Tsumoto, K, Kodama, T, Kanai, M, Doi, H, Inoue, T, Sugiyama, A.
Deposit date:2014-10-01
Release date:2015-02-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure-based design of a streptavidin mutant specific for an artificial biotin analogue.
J.Biochem., 157, 2015
3WZO
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BU of 3wzo by Molmil
Crystal structure of the core streptavidin mutant V21 (Y22S/N23D/S27D/Y83S/R84K/E101D/R103K/E116N) complexed with biotin long tail (BTNtail) at 1.5 A resolution
Descriptor: 6-({5-[(3aS,4S,5S,6aR)-5-oxido-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}amino)hexanoic acid, CADMIUM ION, GLYCEROL, ...
Authors:Kawato, T, Mizohata, E, Shimizu, Y, Meshizuka, T, Yamamoto, T, Takasu, N, Matsuoka, M, Matsumura, H, Tsumoto, K, Kodama, T, Kanai, M, Doi, H, Inoue, T, Sugiyama, A.
Deposit date:2014-10-01
Release date:2015-02-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure-based design of a streptavidin mutant specific for an artificial biotin analogue.
J.Biochem., 157, 2015
3X00
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BU of 3x00 by Molmil
Crystal structure of the core streptavidin mutant V212 (Y22S/N23D/S27D/S45N/Y83S/R84K/E101D/R103K/E116N) complexed with bis iminobiotin long tail (Bis-IMNtail) at 1.3 A resolution
Descriptor: 6-({5-[(2E,3aS,4S,6aR)-2-iminohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}amino)hexanoic acid, ETHANE-1,2-DIAMINE, Streptavidin
Authors:Kawato, T, Mizohata, E, Shimizu, Y, Meshizuka, T, Yamamoto, T, Takasu, N, Matsuoka, M, Matsumura, H, Kodama, T, Kanai, M, Doi, H, Inoue, T, Sugiyama, A.
Deposit date:2014-10-09
Release date:2015-01-21
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structure-based design and synthesis of a bivalent iminobiotin analog showing strong affinity toward a low immunogenic streptavidin mutant.
Biosci.Biotechnol.Biochem., 79, 2015
6LUT
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BU of 6lut by Molmil
Crystal structure of Serine Racemase from Dictyostelium discoideum.
Descriptor: Probable serine racemase
Authors:Goto, M, Mizobuchi, T, Yoshimura, T.
Deposit date:2020-01-31
Release date:2020-12-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Mechanism of eukaryotic serine racemase-catalyzed serine dehydration.
Biochim Biophys Acta Proteins Proteom, 1868, 2020
6L0C
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BU of 6l0c by Molmil
Crystal structure of HIV-1 Integrase catalytic core domain (A128T/K173Q/F185K)
Descriptor: ARSENIC, Integrase, SULFATE ION
Authors:Nakamura, T, Nakamura, T.
Deposit date:2019-09-26
Release date:2020-07-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.101 Å)
Cite:A Conformational Escape Reaction of HIV-1 against an Allosteric Integrase Inhibitor.
J.Virol., 94, 2020
2Z2T
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BU of 2z2t by Molmil
Crystal structure of the complex between gp41 fragment N36 and fusion inhibitor SC34EK
Descriptor: ACETIC ACID, Fusion inhibitor peptide SC34EK, SULFATE ION, ...
Authors:Nakamura, S, Ohkubo, T, Kobayashi, Y.
Deposit date:2007-05-28
Release date:2008-06-03
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Intrahelical Salt-bridges in a-Helical Peptide Enhances its Binding to the Target: A New Design for HIV-1 Fusion Inhibitors
To be Published
2ZZO
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BU of 2zzo by Molmil
Crystal structure of the complex between GP41 fragment N36 and fusion inhibitor C34/S138A
Descriptor: Transmembrane protein
Authors:Watabe, T, Nakano, H, Nakatsu, T, Kato, H, Fujii, N.
Deposit date:2009-02-20
Release date:2009-08-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:X-ray crystallographic study of an HIV-1 fusion inhibitor with the gp41 S138A substitution
J.Mol.Biol., 392, 2009
7EKD
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BU of 7ekd by Molmil
Crystal structure of gibberellin 3-oxidase 2 (GA3ox2) in rice
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-OXOGLUTARIC ACID, Gibberellin 3-beta-dioxygenase 2, ...
Authors:Takehara, S, Kawai, K, Mikami, B, Ueguchi-Tanaka, M.
Deposit date:2021-04-05
Release date:2022-02-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.899 Å)
Cite:Evolutionary alterations in gene expression and enzymatic activities of gibberellin 3-oxidase 1 in Oryza.
Commun Biol, 5, 2022

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