Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
1AQU
DownloadVisualize
BU of 1aqu by Molmil
ESTROGEN SULFOTRANSFERASE WITH BOUND INACTIVE COFACTOR PAP AND 17-BETA ESTRADIOL
Descriptor: ADENOSINE-3'-5'-DIPHOSPHATE, ESTRADIOL, ESTROGEN SULFOTRANSFERASE
Authors:Kakuta, Y, Negishi, M, Pedersen, L.C.
Deposit date:1997-08-01
Release date:1998-10-28
Last modified:2023-07-26
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of estrogen sulphotransferase.
Nat.Struct.Biol., 4, 1997
1AQY
DownloadVisualize
BU of 1aqy by Molmil
ESTROGEN SULFOTRANSFERASE WITH PAP
Descriptor: ADENOSINE-3'-5'-DIPHOSPHATE, ESTROGEN SULFOTRANSFERASE
Authors:Kakuta, Y, Pedersen, L.G, Carter, C.W, Negishi, M, Pedersen, L.C.
Deposit date:1997-08-04
Release date:1998-10-28
Last modified:2023-07-26
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of estrogen sulphotransferase.
Nat.Struct.Biol., 4, 1997
1NST
DownloadVisualize
BU of 1nst by Molmil
THE SULFOTRANSFERASE DOMAIN OF HUMAN HAPARIN SULFATE N-DEACETYLASE/N-SULFOTRANSFERASE
Descriptor: ADENOSINE-3'-5'-DIPHOSPHATE, HEPARAN SULFATE N-DEACETYLASE/N-SULFOTRANSFERASE
Authors:Kakuta, Y, Pedersen, L.C, Negishi, M.
Deposit date:1998-09-07
Release date:1999-09-16
Last modified:2019-08-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the sulfotransferase domain of human heparan sulfate N-deacetylase/ N-sulfotransferase 1.
J.Biol.Chem., 274, 1999
1BO6
DownloadVisualize
BU of 1bo6 by Molmil
ESTROGEN SULFOTRANSFERASE WITH INACTIVE COFACTOR PAP AND VANADATE
Descriptor: ADENOSINE-3'-5'-DIPHOSPHATE, ESTROGEN SULFOTRANSFERASE, VANADATE ION
Authors:Kakuta, Y, Negishi, M, Pedersen, L.C.
Deposit date:1998-08-10
Release date:1999-08-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The sulfuryl transfer mechanism. Crystal structure of a vanadate complex of estrogen sulfotransferase and mutational analysis.
J.Biol.Chem., 273, 1998
1I7H
DownloadVisualize
BU of 1i7h by Molmil
CRYSTAL STURCUTURE OF FDX
Descriptor: FE2/S2 (INORGANIC) CLUSTER, FERREDOXIN
Authors:Kakuta, Y, Horio, T, Takahashi, Y, Fukuyama, K.
Deposit date:2001-03-09
Release date:2002-03-09
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of Escherichia coli Fdx, an adrenodoxin-type ferredoxin involved in the assembly of iron-sulfur clusters.
Biochemistry, 40, 2001
3AY8
DownloadVisualize
BU of 3ay8 by Molmil
Glutathione S-transferase unclassified 2 from Bombyx mori
Descriptor: GLYCEROL, Glutathione S-transferase
Authors:Kakuta, Y, Usuda, K, Nakashima, T, Kimura, M, Aso, Y, Yamamoto, K.
Deposit date:2011-05-02
Release date:2011-09-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystallographic survey of active sites of an unclassified glutathione transferase from Bombyx mori
Biochim.Biophys.Acta, 1810, 2011
2Z4T
DownloadVisualize
BU of 2z4t by Molmil
Crystal Structure of Vibrionaceae Photobacterium sp. JT-ISH-224 2,6-sialyltransferase in a Ternary Complex with Donor Product CMP and Accepter Substrate Lactose
Descriptor: Beta-galactoside alpha-2,6-sialyltransferase, CYTIDINE-5'-MONOPHOSPHATE, GLYCEROL, ...
Authors:Kakuta, Y, Okino, N, Kajiwara, H, Ichikawa, M, Takakura, Y, Ito, M, Yamamoto, T.
Deposit date:2007-06-25
Release date:2008-04-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of Vibrionaceae Photobacterium sp. JT-ISH-224 alpha2,6-sialyltransferase in a ternary complex with donor product CMP and acceptor substrate lactose: catalytic mechanism and substrate recognition
Glycobiology, 18, 2008
1VB5
DownloadVisualize
BU of 1vb5 by Molmil
Crystal Structure Analysis of the Pyrococcus horikoshii OT3 translation initiation factor eIF-2B
Descriptor: translation initiation factor eIF-2B
Authors:Kakuta, Y, Tahara, M, Maetani, S, Kimura, M.
Deposit date:2004-02-22
Release date:2004-12-07
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of the regulatory subunit of archaeal initiation factor 2B (aIF2B) from hyperthermophilic archaeon Pyrococcus horikoshii OT3: a proposed structure of the regulatory subcomplex of eukaryotic IF2B
Biochem.Biophys.Res.Commun., 319, 2004
1X0U
DownloadVisualize
BU of 1x0u by Molmil
Crystal Structure of the carboxyl transferase subunit of putative PCC of Sulfolobus tokodaii
Descriptor: hypothetical methylmalonyl-CoA decarboxylase alpha subunit
Authors:Kakuta, Y, Sueda, S, Kondo, H.
Deposit date:2005-03-29
Release date:2006-07-04
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of the carboxyl transferase subunit of putative PCC of Sulfolobus tokodaii
To be Published
1X0T
DownloadVisualize
BU of 1x0t by Molmil
Crystal structure of ribonuclease P protein Ph1601p from Pyrococcus horikoshii OT3
Descriptor: Ribonuclease P protein component 4, ZINC ION
Authors:Kakuta, Y, Ishimatsu, I, Numata, T, Kimura, K, Yao, M, Tanaka, I, Kimura, M.
Deposit date:2005-03-29
Release date:2005-11-15
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure of a Ribonuclease P Protein Ph1601p from Pyrococcus horikoshii OT3: An Archaeal Homologue of Human Nuclear Ribonuclease P Protein Rpp21(,)
Biochemistry, 44, 2005
2E9L
DownloadVisualize
BU of 2e9l by Molmil
Crystal Structure of human Cytosolic Neutral beta-Glycosylceramidase (Klotho-related Prote:KLrP) complex with Glucose and fatty acids
Descriptor: Cytosolic beta-glucosidase, GLYCEROL, OLEIC ACID, ...
Authors:Kakuta, Y, Hayashi, Y, Okino, N, Ito, M.
Deposit date:2007-01-25
Release date:2007-09-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Klotho-related protein is a novel cytosolic neutral beta-glycosylceramidase.
J.Biol.Chem., 282, 2007
2E9M
DownloadVisualize
BU of 2e9m by Molmil
Crystal Structure of human Cytosolic Neutral beta-Glycosylceramidase (Klotho-related Prote:KLrP) complex with Galactose and fatty acids
Descriptor: Cytosolic beta-glucosidase, OLEIC ACID, PALMITIC ACID, ...
Authors:Kakuta, Y, Hayashi, Y, Okino, N, Ito, M.
Deposit date:2007-01-25
Release date:2007-09-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Klotho-related protein is a novel cytosolic neutral beta-glycosylceramidase.
J.Biol.Chem., 282, 2007
2ZWS
DownloadVisualize
BU of 2zws by Molmil
Crystal Structure Analysis of neutral ceramidase from Pseudomonas aeruginosa
Descriptor: FORMIC ACID, GLYCEROL, MAGNESIUM ION, ...
Authors:Kakuta, Y, Okino, N, Inoue, T, Okano, H, Ito, M.
Deposit date:2008-12-17
Release date:2009-03-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Mechanistic insights into the hydrolysis and synthesis of ceramide by neutral ceramidase.
J.Biol.Chem., 284, 2009
3VK9
DownloadVisualize
BU of 3vk9 by Molmil
Crystal structure of delta-class glutathione transferase from silkmoth
Descriptor: GLYCEROL, Glutathione S-transferase delta
Authors:Kakuta, Y, Usuda, K, Higashiura, A, Suzuki, M, Nakagawa, A, Kimura, M, Yamamoto, K.
Deposit date:2011-11-10
Release date:2012-10-03
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Structural basis for catalytic activity of a silkworm Delta-class glutathione transferase
Biochim.Biophys.Acta, 1820, 2012
2ZSC
DownloadVisualize
BU of 2zsc by Molmil
Tamavidin2, Novel Avidin-like Biotin-Binding Proteins from an Edible Mushroom
Descriptor: BIOTIN, GLYCEROL, MAGNESIUM ION, ...
Authors:Kakuta, Y, Okino, N, Ito, M, Yamamoto, T, Takakura, Y.
Deposit date:2008-09-05
Release date:2009-02-17
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Tamavidins--novel avidin-like biotin-binding proteins from the Tamogitake mushroom
Febs J., 276, 2009
3AML
DownloadVisualize
BU of 3aml by Molmil
Structure of the Starch Branching Enzyme I (BEI) from Oryza sativa L
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ACETATE ION, BETA-MERCAPTOETHANOL, ...
Authors:Kakuta, Y, Chaen, K, Noguchi, J, Vu, N, Kimura, M.
Deposit date:2010-08-20
Release date:2011-09-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of the branching enzyme I (BEI) from Oryza sativa L with implications for catalysis and substrate binding.
Glycobiology, 21, 2011
3AMK
DownloadVisualize
BU of 3amk by Molmil
Structure of the Starch Branching Enzyme I (BEI) from Oryza sativa L
Descriptor: GLYCEROL, Os06g0726400 protein, PHOSPHATE ION
Authors:Kakuta, Y, Chaen, K, Noguchi, J, Vu, N, Kimura, M.
Deposit date:2010-08-20
Release date:2011-09-28
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the branching enzyme I (BEI) from Oryza sativa L with implications for catalysis and substrate binding.
Glycobiology, 21, 2011
1UAI
DownloadVisualize
BU of 1uai by Molmil
Crystal Structure of the Alginate Lyase from Corynebacterium sp.
Descriptor: polyguluronate lyase
Authors:Kakuta, Y.
Deposit date:2003-03-11
Release date:2004-07-27
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Crystal structure of the alginate (poly alpha-l-guluronate) lyase from Corynebacterium sp. at 1.2 A resolution
J.Mol.Biol., 345, 2005
5AX7
DownloadVisualize
BU of 5ax7 by Molmil
yeast pyruvyltransferase Pvg1p
Descriptor: Pyruvyl transferase 1, ZINC ION
Authors:Kanekiyo, M, Yoritsune, K, Yoshinaga, S, Higuchi, Y, Takegawa, K, Kakuta, Y.
Deposit date:2015-07-16
Release date:2016-06-08
Last modified:2020-02-26
Method:X-RAY DIFFRACTION (2.46 Å)
Cite:A rationally engineered yeast pyruvyltransferase Pvg1p introduces sialylation-like properties in neo-human-type complex oligosaccharide
Sci Rep, 6, 2016
1DVE
DownloadVisualize
BU of 1dve by Molmil
CRYSTAL STRUCTURE OF RAT HEME OXYGENASE-1 IN COMPLEX WITH HEME
Descriptor: HEME OXYGENASE-1, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sugishima, M, Omata, Y, Kakuta, Y, Sakamoto, H, Noguchi, M, Fukuyama, K.
Deposit date:2000-01-20
Release date:2000-04-12
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of rat heme oxygenase-1 in complex with heme.
FEBS Lett., 471, 2000
1DVG
DownloadVisualize
BU of 1dvg by Molmil
CRYSTAL STRUCTURE OF RAT HEME OXYGENASE-1 IN COMPLEX WITH HEME; SELELENO-METHIONINE DERIVATIVE, MUTATED AT M51T,M93L,M155L,M191L.
Descriptor: HEME OXYGENASE-1, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sugishima, M, Omata, Y, Kakuta, Y, Sakamoto, H, Noguchi, M, Fukuyama, K.
Deposit date:2000-01-20
Release date:2000-04-12
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of rat heme oxygenase-1 in complex with heme.
FEBS Lett., 471, 2000
8IQP
DownloadVisualize
BU of 8iqp by Molmil
Crystal structure of Anti-PEG antibody M9 Fv-clasp fragment with PEG (co-crystallization with PEG3350)
Descriptor: DODECAETHYLENE GLYCOL, M9 VH-SARAH, M9 VL-SARAH
Authors:Mori, T, Teramoto, T, Liu, Y, Mori, T, Kakuta, Y.
Deposit date:2023-03-17
Release date:2024-03-20
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Comparation of structures and binding properties between two anti-polyethylene glycol antibodies induced via T cell-independent and T cell-dependent pathway
To Be Published
8IQS
DownloadVisualize
BU of 8iqs by Molmil
Crystal structure of Anti-PEG antibody M11 Fv-clasp fragment with PEG (co-crystallization with PEG3350)
Descriptor: 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL, M11 VH-SARAH, M11 VL-SARAH, ...
Authors:Mori, T, Teramoto, T, Liu, Y, Mori, T, Kakuta, Y.
Deposit date:2023-03-17
Release date:2024-03-20
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:Comparation of structures and binding properties between two anti-polyethylene glycol antibodies induced via T cell-independent and T cell-dependent pathway
To Be Published
8IQQ
DownloadVisualize
BU of 8iqq by Molmil
Crystal structure of Anti-PEG antibody M9 Fv-clasp fragment with PEG (co-crystallization with PEG2000MME)
Descriptor: DODECAETHYLENE GLYCOL, M9 VH-SARAH, M9 VL-SARAH
Authors:Mori, T, Teramoto, T, Liu, Y, Mori, T, Kakuta, Y.
Deposit date:2023-03-17
Release date:2024-03-20
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Comparation of structures and binding properties between two anti-polyethylene glycol antibodies induced via T cell-independent and T cell-dependent pathway
To Be Published
8IQR
DownloadVisualize
BU of 8iqr by Molmil
Crystal structure of Anti-PEG antibody M9 Fv-clasp fragment with PEG (co-crystallization with PEG550DME)
Descriptor: 2,5,8,11,14,17,20,23,26-nonaoxaoctacosane, M9 VH-SARAH, M9 VL-SARAH
Authors:Mori, T, Teramoto, T, Liu, Y, Mori, T, Kakuta, Y.
Deposit date:2023-03-17
Release date:2024-03-20
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Comparation of structures and binding properties between two anti-polyethylene glycol antibodies induced via T cell-independent and T cell-dependent pathway
To Be Published

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon