Author results

1GEE
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CRYSTAL STRUCTURE OF GLUCOSE DEHYDROGENASE MUTANT Q252L COMPLEXED WITH NAD+
Descriptor:GLUCOSE 1-DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Yamamoto, K., Kurisu, G., Kusunoki, M., Tabata, S., Urabe, I., Osaki, S.
Deposit date:2000-11-07
Release date:2003-08-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural analysis of stability-increasing mutants of glucose dehydrogenase
To be Published
1G6K
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CRYSTAL STRUCTURE OF GLUCOSE DEHYDROGENASE MUTANT E96A COMPLEXED WITH NAD+
Descriptor:GLUCOSE 1-DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Yamamoto, K., Kurisu, G., Kusunoki, M., Tabata, S., Urabe, I., Osaki, S.
Deposit date:2000-11-06
Release date:2003-08-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural analysis of stability-increasing mutants of glucose dehydrogenase
To be Published
1GCO
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CRYSTAL STRUCTURE OF GLUCOSE DEHYDROGENASE COMPLEXED WITH NAD+
Descriptor:GLUCOSE DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Yamamoto, K., Kurisu, G., Kusunoki, M., Tabata, S., Urabe, I., Osaki, S.
Deposit date:2000-08-07
Release date:2001-02-28
Last modified:2018-06-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of glucose dehydrogenase from Bacillus megaterium IWG3 at 1.7 A resolution.
J.Biochem.(Tokyo), 129, 2001
5X7Y
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CRYSTAL STRUCTURE OF THE DOG LIPOCALIN ALLERGEN CAN F 6
Descriptor:Lipocalin-Can f 6 allergen, DI(HYDROXYETHYL)ETHER
Authors:Yamamoto, K., Otani, T., Sugiura, K., Nakatsuji, M., Nishimura, S., Inui, T.
Deposit date:2017-02-28
Release date:2018-04-04
Last modified:2019-03-06
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Crystal structure of the dog allergen Can f 6 and structure-based implications of its cross-reactivity with the cat allergen Fel d 4.
Sci Rep, 9, 2019
3VPQ
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CRYSTAL STRUCTURE OF BOMBYX MORI SIGMA-CLASS GLUTATHIONE TRANSFERASE IN COMPLEX WITH GLUTATHIONE
Descriptor:Glutathione S-transferase sigma, GLUTATHIONE, S-1,2-PROPANEDIOL, ...
Authors:Yamamoto, K., Higashiura, A., Nakagawa, A., Suzuki, M.
Deposit date:2012-03-08
Release date:2013-03-06
Last modified:2013-07-31
Method:X-RAY DIFFRACTION (1.702 Å)
Cite:Crystal structure of a Bombyx mori sigma-class glutathione transferase exhibiting prostaglandin E synthase activity
Biochim.Biophys.Acta, 1830, 2013
3VPT
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CRYSTAL STRUCTURE OF BOMBYX MORI SIGMA-CLASS GLUTATHIONE TRANSFERASE IN APO FORM
Descriptor:Glutathione S-transferase sigma, S-1,2-PROPANEDIOL, DI(HYDROXYETHYL)ETHER, ...
Authors:Yamamoto, K., Higashiura, A., Suzuki, M., Nakagawa, A.
Deposit date:2012-03-13
Release date:2013-03-06
Last modified:2013-07-31
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of a Bombyx mori sigma-class glutathione transferase exhibiting prostaglandin E synthase activity
Biochim.Biophys.Acta, 1830, 2013
5H5L
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STRUCTURE OF PROSTAGLANDIN SYNTHASE D OF NILAPARVATA LUGENS
Descriptor:Glutathione s-transferase S2, GLUTATHIONE, DI(HYDROXYETHYL)ETHER, ...
Authors:Yamamoto, K., Higashiura, A., Suzuki, S., Nakagawa, A.
Deposit date:2016-11-07
Release date:2017-09-20
Method:X-RAY DIFFRACTION (1.999 Å)
Cite:Molecular structure of a prostaglandin D synthase requiring glutathione from the brown planthopper, Nilaparvata lugens
Biochem. Biophys. Res. Commun., 492, 2017
3A47
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CRYSTAL STRUCTURE OF ISOMALTASE FROM SACCHAROMYCES CEREVISIAE
Descriptor:Oligo-1,6-glucosidase, CALCIUM ION
Authors:Yamamoto, K., Miyake, H., Kusunoki, M., Osaki, S.
Deposit date:2009-07-01
Release date:2010-07-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Crystal structure of isomaltase from Saccharomyces cerevisiae
To be Published
3A4A
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CRYSTAL STRUCTURE OF ISOMALTASE FROM SACCHAROMYCES CEREVISIAE
Descriptor:Oligo-1,6-glucosidase, ALPHA-D-GLUCOSE, CALCIUM ION
Authors:Yamamoto, K., Miyake, H., Kusunoki, M., Osaki, S.
Deposit date:2009-07-01
Release date:2010-07-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structures of isomaltase from Saccharomyces cerevisiae and in complex with its competitive inhibitor maltose
Febs J., 277, 2010
3AJ7
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CRYSTAL STRUCTURE OF ISOMALTASE FROM SACCHAROMYCES CEREVISIAE
Descriptor:Oligo-1,6-glucosidase, CALCIUM ION
Authors:Yamamoto, K., Miyake, H., Kusunoki, M., Osaki, S.
Deposit date:2010-05-26
Release date:2010-08-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Crystal structures of isomaltase from Saccharomyces cerevisiae and in complex with its competitive inhibitor maltose
Febs J., 277, 2010
3AXH
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CRYSTAL STRUCTURE OF ISOMALTASE IN COMPLEX WITH ISOMALTOSE
Descriptor:Oligo-1,6-glucosidase IMA1, ALPHA-D-GLUCOSE, CALCIUM ION
Authors:Yamamoto, K., Miyake, H., Kusunoki, M., Osaki, S.
Deposit date:2011-04-06
Release date:2011-10-05
Last modified:2013-06-19
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Steric hindrance by 2 amino acid residues determines the substrate specificity of isomaltase from Saccharomyces cerevisiae
J.Biosci.Bioeng., 112, 2011
3AXI
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CRYSTAL STRUCTURE OF ISOMALTASE IN COMPLEX WITH MALTOSE
Descriptor:Oligo-1,6-glucosidase IMA1, ALPHA-D-GLUCOSE, CALCIUM ION
Authors:Yamamoto, K., Miyake, H., Kusunoki, M., Osaki, S.
Deposit date:2011-04-06
Release date:2011-10-05
Last modified:2013-06-19
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Steric hindrance by 2 amino acid residues determines the substrate specificity of isomaltase from Saccharomyces cerevisiae
J.Biosci.Bioeng., 112, 2011
3VUR
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CRYSTAL STRUCTURE OF BOMBYX MORI SIGMA-CLASS GLUTATHIONE TRANSFERASE IN COMPLEX WITH GLUTATHIONESULFONIC ACID
Descriptor:Glutathione S-transferase sigma, PENTAETHYLENE GLYCOL, GLUTATHIONE SULFONIC ACID
Authors:Yamamoto, K., Higashiura, A., Nakagawa, A., Suzuki, M.
Deposit date:2012-07-05
Release date:2013-07-10
Method:X-RAY DIFFRACTION (1.365 Å)
Cite:Crystal structure of Bombyx mori sigma-class glutathione transferase in complex with glutathionesulfonic acid
TO BE PUBLISHED
3WCZ
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CRYSTAL STRUCTURE OF BOMBYX MORI ALDO-KETO REDUCTASE (AKR2E4) IN COMPLEX WITH NADP
Descriptor:Aldo-keto reductase 2E, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, 1,2-ETHANEDIOL, ...
Authors:Yamamoto, K., Wilson, D.K.
Deposit date:2013-06-05
Release date:2014-01-01
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Identification, characterization, and crystal structure of an aldo-keto reductase (AKR2E4) from the silkworm Bombyx mori.
Arch.Biochem.Biophys., 538, 2013
3WD6
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CRYSTAL STRUCTURE OF BOMBYX MORI OMEGA-CLASS GLUTATHIONE TRANSFERASE IN COMPLEX WITH GSH
Descriptor:Omega-class glutathione S-transferase, POTASSIUM ION, 1,2-ETHANEDIOL, ...
Authors:Yamamoto, K., Suzuki, M., Higashiura, A., Nakagawa, A.
Deposit date:2013-06-07
Release date:2014-07-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Three-dimensional structure of a Bombyx mori Omega-class glutathione transferase.
Biochem.Biophys.Res.Commun., 438, 2013
3WYW
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STRUCTURAL CHARACTERIZATION OF CATALYTIC SITE OF A NILAPARVATA LUGENS DELTA-CLASS GLUTATHIONE TRANSFERASE
Descriptor:Glutathione S-transferase, GLUTATHIONE, 1,2-ETHANEDIOL
Authors:Yamamoto, K., Higashiura, A., Nakagawa, A.
Deposit date:2014-09-09
Release date:2015-01-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural characterization of the catalytic site of a Nilaparvata lugens delta-class glutathione transferase.
Arch.Biochem.Biophys., 566C, 2014
5AZ0
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CRYSTAL STRUCTURE OF ALDO-KETO REDUCTASE (AKR2E5) OF THE SILKWORM, BOMBYX MORI
Descriptor:Uncharacterized protein, CALCIUM ION, 1,2-ETHANEDIOL, ...
Authors:Yamamoto, K., Higashiura, A., Suzuki, M., Nakagawa, A.
Deposit date:2015-09-15
Release date:2016-02-10
Last modified:2016-05-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural characterization of an aldo-keto reductase (AKR2E5) from the silkworm Bombyx mori
Biochem.Biophys.Res.Commun., 474, 2016
5AZ1
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CRYSTAL STRUCTURE OF ALDO-KETO REDUCTASE (AKR2E5) COMPLEXED WITH NADPH
Descriptor:Uncharacterized protein, CALCIUM ION, 1,2-ETHANEDIOL, ...
Authors:Yamamoto, K., Higashiura, A., Suzuki, M., Nakagawa, A.
Deposit date:2015-09-15
Release date:2016-02-10
Last modified:2016-05-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural characterization of an aldo-keto reductase (AKR2E5) from the silkworm Bombyx mori
Biochem.Biophys.Res.Commun., 474, 2016
5ZFG
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CRYSTAL STRUCTURE OF A DIAZINON-METABOLIZING GLUTATHIONE S-TRANSFERASE IN THE SILKWORM, BOMBYX MORI
Descriptor:Glutathione S-transferase, 1,2-ETHANEDIOL, ACETATE ION
Authors:Yamamoto, K., Higashiura, A., Nakagawa, A.
Deposit date:2018-03-06
Release date:2018-09-12
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of a diazinon-metabolizing glutathione S-transferase in the silkworm, Bombyx mori
To Be Published
3VK9
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CRYSTAL STRUCTURE OF DELTA-CLASS GLUTATHIONE TRANSFERASE FROM SILKMOTH
Descriptor:Glutathione S-transferase delta, GLYCEROL
Authors:Kakuta, Y., Usuda, K., Higashiura, A., Suzuki, M., Nakagawa, A., Kimura, M., Yamamoto, K.
Deposit date:2011-11-10
Release date:2012-10-03
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Structural basis for catalytic activity of a silkworm Delta-class glutathione transferase
Biochim.Biophys.Acta, 1820, 2012
6AD9
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CRYSTAL STRUCTURE OF PPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH DIBENZOOXEPINE DERIVATIVE COMPOUND-9
Descriptor:Peroxisome proliferator-activated receptor gamma, 12-mer peptide from Peroxisome proliferator-activated receptor gamma coactivator 1-alpha, 3-[(1E)-1-{8-[(4-methyl-2-propyl-1H-benzimidazol-1-yl)methyl]dibenzo[b,e]oxepin-11(6H)-ylidene}ethyl]-1,2,4-oxadiazol-5(4H)-one
Authors:Takahashi, Y., Suzuki, M., Yamamoto, K., Saito, J.
Deposit date:2018-07-31
Release date:2018-11-14
Last modified:2018-12-05
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Development of Dihydrodibenzooxepine Peroxisome Proliferator-Activated Receptor (PPAR) Gamma Ligands of a Novel Binding Mode as Anticancer Agents: Effective Mimicry of Chiral Structures by Olefinic E/ Z-Isomers.
J. Med. Chem., 61, 2018
3JCJ
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STRUCTURES OF RIBOSOME-BOUND INITIATION FACTOR 2 REVEAL THE MECHANISM OF SUBUNIT ASSOCIATION
Descriptor:5S ribosomal RNA, 30S ribosomal protein S18, 30S ribosomal protein S21, ...
Authors:Sprink, T., Ramrath, D.J.F., Yamamoto, H., Yamamoto, K., Loerke, J., Ismer, J., Hildebrand, P.W., Scheerer, P., Buerger, J., Mielke, T., Spahn, C.M.T.
Deposit date:2015-12-18
Release date:2016-03-09
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association.
Sci Adv, 2, 2016
3JCN
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STRUCTURES OF RIBOSOME-BOUND INITIATION FACTOR 2 REVEAL THE MECHANISM OF SUBUNIT ASSOCIATION: INITIATION COMPLEX I
Descriptor:50S ribosomal protein L32, 50S ribosomal protein L33, 50S ribosomal protein L34, ...
Authors:Sprink, T., Ramrath, D.J.F., Yamamoto, H., Yamamoto, K., Loerke, J., Ismer, J., Hildebrand, P.W., Scheerer, P., Buerger, J., Mielke, T., Spahn, C.M.T.
Deposit date:2016-01-04
Release date:2016-03-09
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association.
Sci Adv, 2, 2016
5FLX
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MAMMALIAN 40S HCV-IRES COMPLEX
Descriptor:18S RRNA, 40S RIBOSOMAL PROTEIN SA, 40S RIBOSOMAL PROTEIN S3A, ...
Authors:Yamamoto, H., Collier, M., Loerke, J., Ismer, J., Schmidt, A., Hilal, T., Sprink, T., Yamamoto, K., Mielke, T., Burger, J., Shaikh, T.R., Dabrowski, M., Hildebrand, P.W., Scheerer, P., Spahn, C.M.T.
Deposit date:2015-10-28
Release date:2015-12-23
Last modified:2017-08-30
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Molecular Architecture of the Ribosome-Bound Hepatitis C Virus Internal Ribosomal Entry Site RNA.
Embo J., 34, 2015
2ZXQ
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CRYSTAL STRUCTURE OF ENDO-ALPHA-N-ACETYLGALACTOSAMINIDASE FROM BIFIDOBACTERIUM LONGUM (ENGBF)
Descriptor:Endo-alpha-N-acetylgalactosaminidase, MANGANESE (II) ION, (4S)-2-METHYL-2,4-PENTANEDIOL
Authors:Suzuki, R., Katayama, T., Ashida, H., Yamamoto, K., Kitaoka, M., Fushinobu, S.
Deposit date:2009-01-05
Release date:2009-06-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystallographic and mutational analyses of substrate recognition of endo-{alpha}-N-acetylgalactosaminidase from Bifidobacterium longum.
J.Biochem., 2009