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3GDD
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BU of 3gdd by Molmil
An inverted anthraquinone-DNA crystal structure
Descriptor: 5'-D(*(BRU)P*AP*GP*G)-3', MAGNESIUM ION, N,N'-(9,10-dioxo-9,10-dihydroanthracene-2,7-diyl)bis[2-(dimethylamino)acetamide]
Authors:Subirana, J.A, De Luchi, D, Wright, G, Gouyette, C.
Deposit date:2009-02-24
Release date:2010-03-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of a stacked anthraquinone-DNA complex
Acta Crystallogr.,Sect.F, 66, 2010
1G3V
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BU of 1g3v by Molmil
CRYSTAL STRUCTURE OF NICKEL-D[CGTGTACACG]2
Descriptor: 5'-D(*CP*GP*TP*GP*TP*AP*CP*AP*CP*G)-3', NICKEL (II) ION
Authors:Subirana, J.A, Abrescia, N.G.A.
Deposit date:2000-10-25
Release date:2002-01-11
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Nickel-guanine interactions in DNA: crystal structure of nickel-d[CGTGTACACG]2.
J.Biol.Inorg.Chem., 7, 2002
192D
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BU of 192d by Molmil
RECOMBINATION-LIKE STRUCTURE OF D(CCGCGG)
Descriptor: DNA (5'-D(*CP*CP*GP*CP*GP*G)-3'), SODIUM ION
Authors:Malinina, L, Urpi, L, Salas, X, Huynh-Dinh, T, Subirana, J.A.
Deposit date:1994-09-22
Release date:1995-02-07
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Recombination-like structure of d(CCGCGG).
J.Mol.Biol., 243, 1994
4U9M
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BU of 4u9m by Molmil
Structure of the DNA duplex d(ATTAAT)2 with Hoogsteen hydrogen bonds
Descriptor: DNA (5'-D(*AP*TP*TP*AP*AP*T)-3')
Authors:Acosta-Reyes, F.J, Alechaga, E, Subirana, J.A, Campos, J.L.
Deposit date:2014-08-06
Release date:2015-04-01
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.13 Å)
Cite:Structure of the DNA Duplex d(ATTAAT)2 with Hoogsteen Hydrogen Bonds.
Plos One, 10, 2015
2QS6
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BU of 2qs6 by Molmil
Structure of a Hoogsteen antiparallel duplex with extra-helical thymines
Descriptor: DNA (5'-D(*DAP*DTP*DAP*DTP*DAP*DTP*DCP*DT)-3')
Authors:Pous, J, Urpi, L, Subirana, J.A, Gouyette, C, Navaza, J, Campos, J.L.
Deposit date:2007-07-30
Release date:2008-03-25
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.08 Å)
Cite:Stabilization by extra-helical thymines of a DNA duplex with Hoogsteen base pairs.
J.Am.Chem.Soc., 130, 2008
1RSB
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BU of 1rsb by Molmil
X-ray study of the DNA oligomer d(ATATAT) in P65 space group
Descriptor: 5'-D(*AP*TP*AP*TP*AP*T)-3'
Authors:Abrescia, N.G, Gonzalez, C, Gouyette, C, Subirana, J.A.
Deposit date:2003-12-09
Release date:2004-05-25
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:X-ray and NMR studies of the DNA oligomer d(ATATAT): Hoogsteen base pairing in duplex DNA.
Biochemistry, 43, 2004
3UXW
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BU of 3uxw by Molmil
Crystal Structures of an A-T-hook/DNA complex
Descriptor: A-T hook peptide, dodecamer DNA
Authors:Fonfria-Subiros, E, Acosta-Reyes, F.J, Saperas, N, Pous, J, Subirana, J.A, Campos, J.L.
Deposit date:2011-12-05
Release date:2012-05-23
Last modified:2013-03-27
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Crystal structure of a complex of DNA with one AT-hook of HMGA1.
Plos One, 7, 2012
4OCD
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BU of 4ocd by Molmil
In and Out the minor groove: Interaction of an AT rich-DNA with the CD27 drug
Descriptor: N1-(4,5-dihydro-1H-imidazol-2-yl)-N4-(4-((4,5-dihydro-1H-imidazol-2-yl)amino)phenyl)benzene-1,4-diamine, d(AAAATTTT)
Authors:Acosta-Reyes, F.J, Dardonville, C, de Koning, H.P, Natto, M, Subirana, J.A, Campos, J.L.
Deposit date:2014-01-08
Release date:2014-06-11
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:In and out of the minor groove: interaction of an AT-rich DNA with the drug CD27
Acta Crystallogr.,Sect.D, D70, 2014
3HCL
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BU of 3hcl by Molmil
Helical superstructures in a DNA oligonucleotide crystal
Descriptor: DNA (5'-D(*CP*GP*AP*TP*AP*T)-3')
Authors:De Luchi, D, Martinez de Ilarduya, I, Subirana, J.A, Uson, I, Campos, J.L.
Deposit date:2009-05-06
Release date:2010-05-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:A geometric approach to the crystallographic solution of nonconventional DNA structures: helical superstructures of d(CGATAT)
Angew.Chem.Int.Ed.Engl., 49, 2010
2G1Z
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BU of 2g1z by Molmil
X-ray structure of the oligonucleotide sequence d(AAATTT)
Descriptor: 5'-D(*AP*AP*AP*TP*TP*T)-3'
Authors:Valls, N, Santaolalla, A, Campos, J.L, Subirana, J.A.
Deposit date:2006-02-15
Release date:2006-03-21
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:Packing features of the all-AT oligonucleotide d(AAATTT).
J.Biomol.Struct.Dyn., 24, 2007
250D
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BU of 250d by Molmil
STRUCTURAL COMPARISON BETWEEN THE D(CTAG) SEQUENCE IN OLIGONUCLEOTIDES AND TRP AND MET REPRESSOR-OPERATOR COMPLEXES
Descriptor: DNA (5'-D(*CP*GP*CP*TP*AP*GP*CP*G)-3')
Authors:Urpi, L, Tereshko, V, Malinina, L, Huynh-Dinh, T, Subirana, J.A.
Deposit date:1996-02-22
Release date:1996-04-19
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Structural comparison between the d(CTAG) sequence in oligonucleotides and trp and met repressor-operator complexes.
Nat.Struct.Biol., 3, 1996
249D
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BU of 249d by Molmil
STRUCTURAL COMPARISON BETWEEN THE D(CTAG) SEQUENCE IN OLIGONUCLEOTIDES AND TRP AND MET REPRESSOR-OPERATOR COMPLEXES
Descriptor: CALCIUM ION, DNA (5'-D(*CP*GP*CP*TP*CP*TP*AP*GP*AP*GP*CP*G)-3')
Authors:Urpi, L, Tereshko, V, Malinina, L, Huynh-Dinh, T, Subirana, J.A.
Deposit date:1996-02-22
Release date:1996-04-19
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural comparison between the d(CTAG) sequence in oligonucleotides and trp and met repressor-operator complexes.
Nat.Struct.Biol., 3, 1996
1XCS
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BU of 1xcs by Molmil
structure of oligonucleotide/drug complex
Descriptor: 5'-D(*CP*GP*TP*AP*CP*G)-3', 9-[(5-(ACETYLAMINO)-6-{[(1S,4R)-8-AMINO-4-[((2R)-6-AMINO-2-{2-[(1S)-5-AMINO-1-FORMYLPENTYL]HYDRAZINO}HEXANOYL)AMINO]-1-(4-AMINOBUTYL)-2,3-DIOXOOCTYL]AMINO}-6-OXOHEXYL)AMINO]-6-CHLORO-2-METHOXYACRIDINIUM, BARIUM ION, ...
Authors:Valls, N, Steiner, R.A, Wright, G, Murshudov, G.N, Subirana, J.A.
Deposit date:2004-09-03
Release date:2005-07-19
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Variable role of ions in two drug intercalation complexes of DNA
J.Biol.Inorg.Chem., 10, 2005
1XCU
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BU of 1xcu by Molmil
oligonucleotid/drug complex
Descriptor: 1,5-BIS[3-(DIETHYLAMINO)PROPIONAMIDO]ANTHRACENE-9,10-DIONE, 5'-D(*CP*GP*TP*AP*CP*G)-3', BARIUM ION, ...
Authors:Valls, N, Steiner, R.A, Wright, G, Murshudov, G.N, Subirana, J.A.
Deposit date:2004-09-03
Release date:2005-07-19
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Variable role of ions in two drug intercalation complexes of DNA
J.Biol.Inorg.Chem., 10, 2005
4HW1
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BU of 4hw1 by Molmil
Multiple Crystal structures of an all-AT DNA dodecamer stabilized by weak interactions.
Descriptor: DNA (5'-D(*AP*AP*TP*AP*AP*AP*TP*TP*TP*AP*TP*T)-3'), MAGNESIUM ION
Authors:Acosta-Reyes, F, Subirana, J.A, Pous, J, Condom, N, Malinina, L, Campos, J.L.
Deposit date:2012-11-07
Release date:2013-11-20
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Polymorphic crystal structures of an all-AT DNA dodecamer.
Biopolymers, 103, 2015
4J2I
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BU of 4j2i by Molmil
Multiple crystal structures of an all-AT DNA dodecamer stabilized by weak interactions
Descriptor: 5'-D(*AP*AP*TP*AP*AP*AP*TP*TP*TP*AP*TP*T)-3'
Authors:Acosta-Reyes, F.J, Subirana, J.A, Pous, J, Sanchez, R, Condom, N, Baldini, R, Malinina, L, Campos, J.L.
Deposit date:2013-02-04
Release date:2014-02-05
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.98 Å)
Cite:Polymorphic crystal structures of an all-AT DNA dodecamer.
Biopolymers, 103, 2015
2A2T
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BU of 2a2t by Molmil
crystal structure of d(AAATATTT)
Descriptor: 5'-D(*AP*AP*AP*TP*AP*TP*TP*T)-3', CACODYLATE ION, MANGANESE (II) ION
Authors:Valls, N, Richter, M, Subirana, J.A.
Deposit date:2005-06-23
Release date:2005-11-29
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure of a DNA duplex with all-AT base pairs.
Acta Crystallogr.,Sect.D, 61, 2005
2AF1
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BU of 2af1 by Molmil
Structure of the DNA coiled-coil formed by d(CGATATATATAT)
Descriptor: 5'-D(*CP*GP*AP*TP*AP*TP*AP*TP*AP*TP*AP*T)-3'
Authors:De Luchi, D, Tereshko, V, Gouyette, C, Subirana, J.A.
Deposit date:2005-07-25
Release date:2006-03-07
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure of the DNA Coiled Coil Formed by d(CGATATATATAT)
Chembiochem, 7, 2006
2D47
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BU of 2d47 by Molmil
MOLECULAR STRUCTURE OF A COMPLETE TURN OF A-DNA
Descriptor: DNA (5'-D(*CP*CP*CP*CP*CP*GP*CP*GP*GP*GP*GP*G)-3'), SPERMINE
Authors:Verdaguer, N, Aymami, J, Fernandez-Forner, D, Fita, I, Coll, M, Huynh-Dinh, T, Igolen, J, Subirana, J.A.
Deposit date:1991-10-02
Release date:1991-10-02
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Molecular structure of a complete turn of A-DNA.
J.Mol.Biol., 221, 1991
368D
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BU of 368d by Molmil
STRUCTURAL VARIABILITY OF A-DNA IN CRYSTALS OF THE OCTAMER D(PCPCPCPGPCPGPGPG)
Descriptor: DNA (5'-D(P*CP*CP*CP*GP*CP*GP*GP*G)-3')
Authors:Fernandez, L.G, Subirana, J.A, Verdaguer, N, Pyshnyi, D, Campos, L, Malinina, L.
Deposit date:1997-12-19
Release date:1998-07-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural variability of A-DNA in crystals of the octamer d(pCpCpCpGpCpGpGpG)
J.Biomol.Struct.Dyn., 15, 1997
391D
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BU of 391d by Molmil
STRUCTURAL VARIABILITY AND NEW INTERMOLECULAR INTERACTIONS OF Z-DNA IN CRYSTALS OF D(PCPGPCPGPCPG)
Descriptor: DNA (5'-D(P*CP*GP*CP*GP*CP*G)-3')
Authors:Malinina, L, Tereshko, V, Ivanova, E, Subirana, J.A, Zarytova, V, Nekrasov, Y.
Deposit date:1998-04-20
Release date:1998-05-05
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural variability and new intermolecular interactions of Z-DNA in crystals of d(pCpGpCpGpCpG).
Biophys.J., 74, 1998
399D
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BU of 399d by Molmil
STRUCTURE OF D(CGCCCGCGGGCG)
Descriptor: DNA (5'-D(*CP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*G)-3')
Authors:Malinina, L, Fernandez, L.G, Subirana, J.A.
Deposit date:1998-05-11
Release date:1999-01-18
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of the d(CGCCCGCGGGCG) dodecamer: a kinked A-DNA molecule showing some B-DNA features.
J.Mol.Biol., 285, 1999
371D
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STRUCTURAL VARIABILITY OF A-DNA IN CRYSTALS OF THE OCTAMER D(PCPCPCPGPCPGPGPG)
Descriptor: DNA (5'-D(P*CP*CP*CP*GP*CP*GP*GP*G)-3')
Authors:Fernandez, L.G, Subirana, J.A, Verdaguer, N, Pyshnyi, D, Campos, L.
Deposit date:1997-12-19
Release date:1998-07-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural variability of A-DNA in crystals of the octamer d(pCpCpCpGpCpGpGpG)
J.Biomol.Struct.Dyn., 15, 1997
370D
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BU of 370d by Molmil
STRUCTURAL VARIABILITY OF A-DNA IN CRYSTALS OF THE OCTAMER D(PCPCPCPGPCPGPGPG)
Descriptor: DNA (5'-D(P*CP*CP*CP*GP*CP*GP*GP*G)-3'), MAGNESIUM ION
Authors:Fernandez, L.G, Subirana, J.A, Verdaguer, N, Pyshnyi, D, Campos, L.
Deposit date:1997-12-19
Release date:1998-07-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Structural variability of A-DNA in crystals of the octamer d(pCpCpCpGpCpGpGpG)
J.Biomol.Struct.Dyn., 15, 1997
446D
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BU of 446d by Molmil
STRUCTURE OF THE OLIGONUCLEOTIDE D(CGTATATACG) AS A SITE SPECIFIC COMPLEX WITH NICKEL IONS
Descriptor: DNA (5'-D(*CP*GP*TP*AP*TP*AP*TP*AP*CP*G)-3'), NICKEL (II) ION
Authors:Abrescia, N.G.A, Malinina, L, Gonzaga, L.F, Huynh-Dinh, T, Neidle, S, Subirana, J.A.
Deposit date:1999-01-15
Release date:1999-03-18
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of the oligonucleotide d(CGTATATACG) as a site-specific complex with nickel ions.
Nucleic Acids Res., 27, 1999

 

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