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7T5I
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BU of 7t5i by Molmil
Crystal Structure of Strictosidine Synthase in complex with R-IPA(2-(1H-indol-3-yl) propan-1-amine)
Descriptor: (2R)-2-(1H-indol-3-yl)propan-1-amine, Strictosidine synthase
Authors:Liu, H, Panjikar, S, Futamura, Y, Shao, N, Osada, H, Zou, H.
Deposit date:2021-12-12
Release date:2022-12-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.94 Å)
Cite:Beta-Branched Tryptamine Provoked Non Sandwich-Like-Mode Catalysis of Strictosidine Synthase to Antimalarial Indole Alkaloids
to be published
7T5J
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BU of 7t5j by Molmil
Crystal Structure of Strictosidine Synthase in complex with S-IPA (2-(1H-indol-3-yl) propan-1-amine)
Descriptor: (2S)-2-(1H-indol-3-yl)propan-1-amine, Strictosidine synthase
Authors:Liu, H, Panjikar, S, Futamura, Y, Shao, N, Osada, H, Zou, H.
Deposit date:2021-12-12
Release date:2022-12-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.86 Å)
Cite:beta-Branched Tryptamine Provoked Non Sandwich-Like-Mode Catalysis of Strictosidine Synthase to Antimalarial Indole Alkaloids
to be published
3ACL
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BU of 3acl by Molmil
Crystal Structure of Human Pirin in complex with Triphenyl Compound
Descriptor: FE (II) ION, N-{[4-(benzyloxy)phenyl](methyl)-lambda~4~-sulfanylidene}-4-methylbenzenesulfonamide, Pirin
Authors:Okumura, H, Miyazaki, I, Simizu, S, Osada, H.
Deposit date:2010-01-05
Release date:2010-08-18
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:A small-molecule inhibitor shows that pirin regulates migration of melanoma cells
Nat.Chem.Biol., 6, 2010
6N5V
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BU of 6n5v by Molmil
Crystal Structure of Strictosidine in complex with 1H-indole-4-ethanamine
Descriptor: 2-(1H-indol-4-yl)ethan-1-amine, Strictosidine synthase
Authors:Cai, Y, Shao, N, Xie, H, Futamura, Y, Panjikar, S, Liu, H, Zhu, H, Osada, H, Zou, H.
Deposit date:2018-11-22
Release date:2019-11-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.549 Å)
Cite:Crystal Structure of Strictosidine in complex with 1H-indole-4-ethanamine
to be published
2ZA0
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BU of 2za0 by Molmil
Crystal structure of mouse glyoxalase I complexed with methyl-gerfelin
Descriptor: Glyoxalase I, ZINC ION, methyl 4-(2,3-dihydroxy-5-methylphenoxy)-2-hydroxy-6-methylbenzoate
Authors:Okumura, H, Kawatani, M, Osada, H.
Deposit date:2007-09-26
Release date:2008-08-12
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The identification of an osteoclastogenesis inhibitor through the inhibition of glyoxalase I
Proc.Natl.Acad.Sci.Usa, 105, 2008
2ZHP
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BU of 2zhp by Molmil
Crystal structure of bleomycin-binding protein from Streptoalloteichus hindustanus complexed with bleomycin derivative
Descriptor: Bleomycin resistance protein, CHLORIDE ION, COPPER (II) ION, ...
Authors:Okumura, H, Miyazaki, I, Simizu, S, Osada, H.
Deposit date:2008-02-06
Release date:2009-02-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure-Affinity Relationship Study of Bleomycins and Shble protein Using a Chemical Array
To be Published
6KOG
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BU of 6kog by Molmil
Ketosynthase domain in tenuazonic acid synthetase 1 (TAS1).
Descriptor: GLYCEROL, Hybrid PKS-NRPS synthetase TAS1, SULFATE ION
Authors:Yun, C.S, Nishimoto, K, Motoyama, T, Hino, T, Nagano, S, Osada, H.
Deposit date:2019-08-10
Release date:2020-07-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Unique features of the ketosynthase domain in a nonribosomal peptide synthetase-polyketide synthase hybrid enzyme, tenuazonic acid synthetase 1.
J.Biol.Chem., 295, 2020
5IH5
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BU of 5ih5 by Molmil
Human Casein Kinase 1 isoform delta (kinase domain) in complex with Epiblastin A
Descriptor: 6-(3-chlorophenyl)pteridine-2,4,7-triamine, Casein kinase I isoform delta, S,R MESO-TARTARIC ACID, ...
Authors:Ursu, A, Illich, D.J, Takemoto, Y, Porfetye, A.T, Zhang, M, Brockmeyer, A, Janning, P, Watanabe, N, Osada, H, Vetter, I.R, Ziegler, S, Schoeler, H.R, Waldmann, H.
Deposit date:2016-02-29
Release date:2016-04-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Epiblastin A Induces Reprogramming of Epiblast Stem Cells Into Embryonic Stem Cells by Inhibition of Casein Kinase 1.
Cell Chem Biol, 23, 2016
5IH4
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BU of 5ih4 by Molmil
Human Casein Kinase 1 isoform delta apo (kinase domain)
Descriptor: Casein kinase I isoform delta, S,R MESO-TARTARIC ACID, SULFATE ION, ...
Authors:Ursu, A, Illich, D.J, Takemoto, Y, Porfetye, A.T, Zhang, M, Brockmeyer, A, Janning, P, Watanabe, N, Osada, H, Vetter, I.R, Ziegler, S, Schoeler, H.R, Waldmann, H.
Deposit date:2016-02-29
Release date:2016-04-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Epiblastin A Induces Reprogramming of Epiblast Stem Cells Into Embryonic Stem Cells by Inhibition of Casein Kinase 1.
Cell Chem Biol, 23, 2016
5IH6
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BU of 5ih6 by Molmil
Human Casein Kinase 1 isoform delta (kinase domain) in complex with Epiblastin A derivative
Descriptor: 6-(3-bromophenyl)pteridine-2,4,7-triamine, Casein kinase I isoform delta, S,R MESO-TARTARIC ACID, ...
Authors:Ursu, A, Illich, D.J, Takemoto, Y, Porfetye, A.T, Zhang, M, Brockmeyer, A, Janning, P, Watanabe, N, Osada, H, Vetter, I.R, Ziegler, S, Schoeler, H.R, Waldmann, H.
Deposit date:2016-02-29
Release date:2016-04-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Epiblastin A Induces Reprogramming of Epiblast Stem Cells Into Embryonic Stem Cells by Inhibition of Casein Kinase 1.
Cell Chem Biol, 23, 2016
3U0V
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BU of 3u0v by Molmil
Crystal Structure Analysis of human LYPLAL1
Descriptor: Lysophospholipase-like protein 1
Authors:Burger, M, Zimmermann, T.J, Kondoh, Y, Stege, P, Watanabe, N, Osada, H, Waldmann, H, Vetter, I.R.
Deposit date:2011-09-29
Release date:2011-11-16
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Crystal structure of the predicted phospholipase LYPLAL1 reveals unexpected functional plasticity despite close relationship to acyl protein thioesterases
J.Lipid Res., 53, 2012
3VNS
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BU of 3vns by Molmil
Co-crystal structure of NRPS adenylation protein CytC1 with D-valine and AMP from streptomyces
Descriptor: ADENOSINE MONOPHOSPHATE, D-VALINE, NRPS adenylation protein CytC1
Authors:Okumura, H, Ueki, M, Shiro, Y, Osada, H.
Deposit date:2012-01-17
Release date:2013-01-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Substrate recognition mechanism of NRPS adenylation protein from Streptomyces
to be published
3VNQ
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BU of 3vnq by Molmil
Co-crystal structure of NRPS adenylation protein CytC1 with ATP from streptomyces
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, NRPS adenylation protein CytC1
Authors:Okumura, H, Ueki, M, Shiro, Y, Osada, H.
Deposit date:2012-01-17
Release date:2013-01-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Substrate recognition mechanism of NRPS adenylation protein from Streptomyces
To be Published
3VNR
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BU of 3vnr by Molmil
Co-crystal structure of NRPS adenylation protein CytC1 with aminobutyric acid and AMP from streptomyces
Descriptor: ADENOSINE MONOPHOSPHATE, ALPHA-AMINOBUTYRIC ACID, NRPS adenylation protein CytC1
Authors:Okumura, H, Ueki, M, Shiro, Y, Osada, H.
Deposit date:2012-01-17
Release date:2013-01-23
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Substrate recognition mechanism of NRPS adenylation protein from Streptomyces
To be Published
5INI
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BU of 5ini by Molmil
Structural basis for acyl-CoA carboxylase-mediated assembly of unusual polyketide synthase extender units incorporated into the stambomycin antibiotics
Descriptor: HEXANOYL-COENZYME A, Putative carboxyl transferase
Authors:Valentic, T.R, Ray, L, Miyazawa, T, Withall, D.M, Song, L, Milligan, J.C, Osada, H, Tsai, S.C, Challis, G.L.
Deposit date:2016-03-07
Release date:2016-12-28
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:A crotonyl-CoA reductase-carboxylase independent pathway for assembly of unusual alkylmalonyl-CoA polyketide synthase extender units.
Nat Commun, 7, 2016
5ING
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BU of 5ing by Molmil
A crotonyl-CoA reductase-carboxylase independent pathway for assembly of unusual alkylmalonyl-CoA polyketide synthase extender unit
Descriptor: Putative carboxyl transferase
Authors:Valentic, T.R, Ray, L, Miyazawa, T, Song, L, Withall, D.M, Milligan, J.C, Takahashi, S, Osada, H, Tsai, S.C, Challis, G.L.
Deposit date:2016-03-07
Release date:2016-12-28
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:A crotonyl-CoA reductase-carboxylase independent pathway for assembly of unusual alkylmalonyl-CoA polyketide synthase extender units.
Nat Commun, 7, 2016
5INF
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BU of 5inf by Molmil
Structural basis for acyl-CoA carboxylase-mediated assembly of unusual polyketide synthase extender units incorporated into the stambomycin antibiotics
Descriptor: Carboxyl transferase, HEXANOYL-COENZYME A
Authors:Valentic, T.R, Ray, L, Miyazawa, T, Withall, D.M, Song, L, Osada, H, Tsai, S.C, Challis, G.L.
Deposit date:2016-03-07
Release date:2016-12-28
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.751 Å)
Cite:A crotonyl-CoA reductase-carboxylase independent pathway for assembly of unusual alkylmalonyl-CoA polyketide synthase extender units.
Nat Commun, 7, 2016
3WVS
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BU of 3wvs by Molmil
Crystal Structure of Cytochrome P450revI
Descriptor: (2E,4S,5S,6E,8E)-10-{(2R,3S,6S,8R,9S)-9-butyl-8-[(1E,3E)-4-carboxy-3-methylbuta-1,3-dien-1-yl]-3-methyl-1,7-dioxaspiro[5.5]undec-2-yl}-5-hydroxy-4,8-dimethyldeca-2,6,8-trienoic acid, GLYCEROL, L(+)-TARTARIC ACID, ...
Authors:Nagano, S, Takahashi, S, Osada, H, Shiro, Y.
Deposit date:2014-06-06
Release date:2014-10-01
Last modified:2022-08-24
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structure-function analyses of cytochrome P450revI involved in reveromycin A biosynthesis and evaluation of the biological activity of its substrate, reveromycin T.
J.Biol.Chem., 289, 2014
7TVW
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BU of 7tvw by Molmil
Crystal structure of Arabidopsis thaliana DLK2
Descriptor: Alpha/beta-Hydrolases superfamily protein
Authors:Burger, M, Chory, J.
Deposit date:2022-02-06
Release date:2022-09-28
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Crystal structure of Arabidopsis DWARF14-LIKE2 (DLK2) reveals a distinct substrate binding pocket architecture.
Plant Direct, 6, 2022
7E5V
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BU of 7e5v by Molmil
Crystal structure of Phm7 in complex with inhibitor
Descriptor: Diels-Alderase, GLYCEROL, SULFATE ION, ...
Authors:Fujiyama, K, Kato, N, Kinugasa, K, Hino, T, Takahashi, S, Nagano, S.
Deposit date:2021-02-20
Release date:2021-06-30
Last modified:2021-10-13
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Molecular Basis for Two Stereoselective Diels-Alderases that Produce Decalin Skeletons*.
Angew.Chem.Int.Ed.Engl., 60, 2021
7E5U
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BU of 7e5u by Molmil
Crystal structure of Phm7
Descriptor: CHLORIDE ION, Diels-Alderase, GLYCEROL, ...
Authors:Fujiyama, K, Kato, N, Kinugasa, K, Hino, T, Takahashi, S, Nagano, S.
Deposit date:2021-02-20
Release date:2021-06-30
Last modified:2021-10-13
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Molecular Basis for Two Stereoselective Diels-Alderases that Produce Decalin Skeletons*.
Angew.Chem.Int.Ed.Engl., 60, 2021
7E5T
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BU of 7e5t by Molmil
Crystal structure of Fsa2
Descriptor: Diels-Alderase fsa2, ETHANOL, PENTAETHYLENE GLYCOL, ...
Authors:Fujiyama, K, Kato, N, Kinugasa, K, Hino, T, Takahashi, S, Nagano, S.
Deposit date:2021-02-20
Release date:2021-06-30
Last modified:2021-10-13
Method:X-RAY DIFFRACTION (2.16977525 Å)
Cite:Molecular Basis for Two Stereoselective Diels-Alderases that Produce Decalin Skeletons*.
Angew.Chem.Int.Ed.Engl., 60, 2021

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