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1G6M
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BU of 1g6m by Molmil
NMR SOLUTION STRUCTURE OF CBT2
Descriptor: SHORT NEUROTOXIN 1
Authors:Cheng, Y, Wang, W, Wang, J.
Deposit date:2000-11-07
Release date:2000-11-22
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:NMR Solution structure of CBT2
To be Published
1JE9
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BU of 1je9 by Molmil
NMR SOLUTION STRUCTURE OF NT2
Descriptor: SHORT NEUROTOXIN II
Authors:Cheng, Y, Wang, W, Wang, J.
Deposit date:2001-06-16
Release date:2001-07-04
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Structure-function relationship of three neurotoxins from the venom of Naja kaouthia: a comparison between the NMR-derived structure of NT2 with its homologues, NT1 and NT3
BIOCHIM.BIOPHYS.ACTA, 1594, 2002
1ZBH
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BU of 1zbh by Molmil
3'-end specific recognition of histone mRNA stem-loop by 3'-exonuclease
Descriptor: 3'-5' exonuclease ERI1, 5'-R(*CP*CP*GP*GP*CP*UP*CP*UP*UP*UP*UP*CP*AP*GP*AP*GP*CP*CP*GP*G)-3', ADENOSINE MONOPHOSPHATE, ...
Authors:Cheng, Y, Patel, D.J.
Deposit date:2005-04-08
Release date:2006-09-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis for 3'-end specific recognition of histone mRNA stem-loop by 3'-exonuclease, a human nuclease that also targets siRNA
To be Published
1ZBU
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BU of 1zbu by Molmil
crystal structure of full-length 3'-exonuclease
Descriptor: 3'-5' exonuclease ERI1, ADENOSINE MONOPHOSPHATE, MAGNESIUM ION
Authors:Cheng, Y, Patel, D.J.
Deposit date:2005-04-08
Release date:2006-09-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.998 Å)
Cite:Structural basis for 3'-end specific recognition of histone mRNA stem-loop by 3'-exonuclease, a human nuclease that also targets siRNA
To be Published
1SUV
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BU of 1suv by Molmil
Structure of Human Transferrin Receptor-Transferrin Complex
Descriptor: CARBONATE ION, FE (III) ION, Serotransferrin, ...
Authors:Cheng, Y, Zak, O, Aisen, P, Harrison, S.C, Walz, T.
Deposit date:2004-03-26
Release date:2004-04-13
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (7.5 Å)
Cite:Structure of the Human Transferrin Receptor-Transferrin Complex
Cell(Cambridge,Mass.), 116, 2004
1TJX
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BU of 1tjx by Molmil
Crystallographic Identification of Ca2+ Coordination Sites in Synaptotagmin I C2B Domain
Descriptor: ACETATE ION, CALCIUM ION, GLYCEROL, ...
Authors:Cheng, Y, Sequeira, S.M, Malinina, L, Tereshko, V, Sollner, T.H, Patel, D.J.
Deposit date:2004-06-07
Release date:2004-11-23
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.04 Å)
Cite:Crystallographic identification of Ca2+ and Sr2+ coordination sites in synaptotagmin I C2B domain.
Protein Sci., 13, 2004
1TJM
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BU of 1tjm by Molmil
Crystallographic Identification of Sr2+ Coordination Site in Synaptotagmin I C2B Domain
Descriptor: GLYCEROL, STRONTIUM ION, Synaptotagmin I
Authors:Cheng, Y, Sequeira, S.M, Malinina, L, Tereshko, V, Sollner, T.H, Patel, D.J.
Deposit date:2004-06-06
Release date:2004-09-28
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Crystallographic identification of Ca2+ and Sr2+ coordination sites in synaptotagmin I C2B domain
Protein Sci., 13, 2004
1UOW
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BU of 1uow by Molmil
Calcium binding domain C2B
Descriptor: ACETATE ION, CALCIUM ION, GLYCEROL, ...
Authors:Cheng, Y, Sequeira, S.M, Sollner, T.H, Patel, D.J.
Deposit date:2003-09-24
Release date:2004-09-16
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.04 Å)
Cite:Crystallographic Identification of Ca2+ and Sr2+ Coordination Sites in Synaptotagmin I C2B Domain
Protein Sci., 13, 2004
1UOV
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BU of 1uov by Molmil
Calcium binding domain C2B
Descriptor: CALCIUM ION, GLYCEROL, SYNAPTOTAGMIN I
Authors:Cheng, Y, Sequeira, S.M, Sollner, T.H, Patel, D.J.
Deposit date:2003-09-24
Release date:2004-09-09
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystallographic Identification of Ca2+ and Sr2+ Coordination Sites in Synaptotagmin I C2B Domain
Protein Sci., 13, 2004
1W0H
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BU of 1w0h by Molmil
Crystallographic structure of the nuclease domain of 3'hExo, a DEDDh family member, bound to rAMP
Descriptor: 3'-5' EXONUCLEASE ERI1, ADENOSINE MONOPHOSPHATE, MAGNESIUM ION
Authors:Cheng, Y, Patel, D.
Deposit date:2004-06-04
Release date:2004-09-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Crystallographic Structure of the Nuclease Domain of 3'Hexo, a Deddh Family Member, Bound to Ramp
J.Mol.Biol., 343, 2004
3R8D
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BU of 3r8d by Molmil
Activation of the Human Nuclear Xenobiotic Receptor PXR by the Reverse Transcriptase-Targeted Anti-HIV Drug PNU-142721
Descriptor: 6-CHLORO-2-(1-FURO[2,3-C]PYRIDIN-5-YL-ETHYLSULFANYL)-PYRIMIDIN-4-YLAMINE, Nuclear receptor subfamily 1 group I member 2
Authors:Cheng, Y, Redinbo, M.R.
Deposit date:2011-03-23
Release date:2011-08-17
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Activation of the human nuclear xenobiotic receptor PXR by the reverse transcriptase-targeted anti-HIV drug PNU-142721.
Protein Sci., 20, 2011
3R0Q
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BU of 3r0q by Molmil
A Uniquely Open Conformation Revealed in the Crystal Structure of Arabidopsis Thaliana Protein Arginine Methyltransferase 10
Descriptor: Probable protein arginine N-methyltransferase 4.2, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Cheng, Y, Redinbo, M.R.
Deposit date:2011-03-08
Release date:2011-10-19
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Crystal structure of the plant epigenetic protein arginine methyltransferase 10.
J.Mol.Biol., 414, 2011
8GS1
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BU of 8gs1 by Molmil
Crystal structure of AziU2-U3 complex from Streptomyces sahachiroi NRRL2485
Descriptor: Azi28, Azi29, FORMIC ACID, ...
Authors:Cheng, Y, Li, P, Liu, W, Fang, P.
Deposit date:2022-09-04
Release date:2023-09-06
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Oxidase Heterotetramer Completes 1-Azabicyclo[3.1.0]hexane Formation with the Association of a Nonribosomal Peptide Synthetase.
J.Am.Chem.Soc., 145, 2023
8HK0
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BU of 8hk0 by Molmil
Crystal structure of Fic32-33 complex from Streptomyces ficellus NRRL 8067
Descriptor: Acyl-CoA dehydrogenase, Dehydrogenase, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Cheng, Y, Qiao, H, Liu, W, Fang, P.
Deposit date:2022-11-24
Release date:2023-04-26
Last modified:2023-05-10
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Oxidase Heterotetramer Completes 1-Azabicyclo[3.1.0]hexane Formation with the Association of a Nonribosomal Peptide Synthetase.
J.Am.Chem.Soc., 145, 2023
7VRB
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BU of 7vrb by Molmil
Structure of the Human BRG1/SS18 complex
Descriptor: SMARCA4 protein,Protein SSXT
Authors:Cheng, Y, Chen, F, Zhou, H, Long, J.
Deposit date:2021-10-22
Release date:2022-05-25
Last modified:2022-12-07
Method:X-RAY DIFFRACTION (2.389 Å)
Cite:Phase transition and remodeling complex assembly are important for SS18-SSX oncogenic activity in synovial sarcomas.
Nat Commun, 13, 2022
7VRC
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BU of 7vrc by Molmil
Structure of the Yeast SNF11/SNF2 complex
Descriptor: Transcription regulatory protein SNF11, XXYS1_4_G0032080.mRNA.1.CDS.1
Authors:Cheng, Y, Chen, F, Zhou, H, Long, J.
Deposit date:2021-10-22
Release date:2022-05-25
Method:X-RAY DIFFRACTION (2.147 Å)
Cite:Structure of the Yeast SNF11/SNF2 complex
To Be Published
6UTF
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BU of 6utf by Molmil
Allosteric coupling between alpha-rings of the 20S proteasome, archaea 20S proteasome singly capped with a PAN complex
Descriptor: Proteasome subunit alpha, Proteasome subunit beta
Authors:Cheng, Y, Yu, Z.
Deposit date:2019-10-29
Release date:2020-09-09
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Allosteric coupling between alpha-rings of the 20S proteasome.
Nat Commun, 11, 2020
6UTH
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BU of 6uth by Molmil
Allosteric coupling between alpha-rings of 20S proteasome, 20S proteasome singly capped with a PA26/E102A_PANc, together with LFP incubation
Descriptor: Proteasome activator protein PA26, Proteasome subunit alpha, Proteasome subunit beta
Authors:Cheng, Y, Yu, Z.
Deposit date:2019-10-29
Release date:2020-09-09
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Allosteric coupling between alpha-rings of the 20S proteasome.
Nat Commun, 11, 2020
6UTJ
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BU of 6utj by Molmil
Allosteric couple between alpha rings of the 20S proteasome. 20S proteasome singly capped by PA26/E102A, C-terminus replaced by PAN C-terminus
Descriptor: Proteasome activator protein PA26, Proteasome subunit alpha, Proteasome subunit beta
Authors:Cheng, Y, Yu, Z.
Deposit date:2019-10-29
Release date:2020-09-09
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Allosteric coupling between alpha-rings of the 20S proteasome.
Nat Commun, 11, 2020
6UTI
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BU of 6uti by Molmil
Allosteric coupling between alpha-rings of 20S proteasome, 20S proteasome with singly capped PAN complex
Descriptor: Proteasome subunit alpha, Proteasome subunit beta
Authors:Cheng, Y, Yu, Z.
Deposit date:2019-10-29
Release date:2020-09-09
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Allosteric coupling between alpha-rings of the 20S proteasome.
Nat Commun, 11, 2020
6JHY
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BU of 6jhy by Molmil
Crystal Structure of the S1 subunit N-terminal domain from DcCoV UAE-HKU23 spike protein
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein
Authors:Lu, G, Cheng, Y, Ye, F.
Deposit date:2019-02-19
Release date:2019-07-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the S1 subunit N-terminal domain from DcCoV UAE-HKU23 spike protein.
Virology, 535, 2019
8ET5
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BU of 8et5 by Molmil
Crystal structure of arabidopsis thaliana acetohydroxyacid synthase S653T mutant in complex with amidosulfuron
Descriptor: 2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-2-[(1~{S})-1-(dioxidanyl)-1-oxidanyl-ethyl]-4-methyl-1,3-thiazol-5-yl]ethyl phosphono hydrogen phosphate, 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, Acetolactate synthase, ...
Authors:Guddat, L.W, Cheng, Y.
Deposit date:2022-10-16
Release date:2023-03-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.94 Å)
Cite:Crystal Structure of the Commercial Herbicide, Amidosulfuron, in Complex with Arabidopsis thaliana Acetohydroxyacid Synthase.
J.Agric.Food Chem., 71, 2023
8ET4
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BU of 8et4 by Molmil
Crystal structure of wild-type arabidopsis thaliana acetohydroxyacid synthase in complex with amidosulfuron
Descriptor: 2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-2-[(1~{S})-1-(dioxidanyl)-1-oxidanyl-ethyl]-4-methyl-1,3-thiazol-5-yl]ethyl phosphono hydrogen phosphate, 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, Acetolactate synthase, ...
Authors:Guddat, L.W, Cheng, Y.
Deposit date:2022-10-16
Release date:2023-03-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Crystal Structure of the Commercial Herbicide, Amidosulfuron, in Complex with Arabidopsis thaliana Acetohydroxyacid Synthase.
J.Agric.Food Chem., 71, 2023
8JBA
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BU of 8jba by Molmil
Discovery and Crystallography Study of Novel Oxadiazole Analogs as Small Molecule PD-1/PD-L1 inhibitors
Descriptor: (2~{S})-2-[[3-[[5-[(2-methyl-3-phenyl-phenoxy)methyl]-1,3,4-oxadiazol-2-yl]sulfanylmethyl]phenyl]methylamino]-3-oxidanyl-propanoic acid, Programmed cell death 1 ligand 1
Authors:Cheng, Y, Xiao, Y.B.
Deposit date:2023-05-08
Release date:2023-10-25
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Discovery and Crystallography Study of Novel Biphenyl Ether and Oxadiazole Thioether (Non-Arylmethylamine)-Based Small-Molecule PD-1/PD-L1 Inhibitors as Immunotherapeutic Agents.
J.Med.Chem., 66, 2023
8K5N
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BU of 8k5n by Molmil
Discovery of Novel PD-L1 Inhibitors That Induce Dimerization and Degradation of PD-L1 Based on Fragment Coupling Strategy
Descriptor: 3-[(1~{S})-1-[6-methoxy-3-methyl-5-[[[(2~{S})-5-oxidanylidenepyrrolidin-2-yl]methylamino]methyl]pyridin-2-yl]oxy-2,3-dihydro-1~{H}-inden-4-yl]-2-methyl-~{N}-[5-[[[(2~{S})-5-oxidanylidenepyrrolidin-2-yl]methylamino]methyl]pyridin-2-yl]benzamide, Programmed cell death 1 ligand 1
Authors:Cheng, Y, Xiao, Y.B.
Deposit date:2023-07-22
Release date:2024-01-03
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Discovery of Novel PD-L1 Inhibitors That Induce the Dimerization, Internalization, and Degradation of PD-L1 Based on the Fragment Coupling Strategy.
J.Med.Chem., 66, 2023

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