Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6BV7
DownloadVisualize
BU of 6bv7 by Molmil
NMR structure of Sodium/Calcium Exchanger 1 (NCX1) Two-helix Bundle (THB) domain
Descriptor: Sodium/calcium exchanger 1
Authors:Yuan, J, Yuan, C, Bruschweiler, R.
Deposit date:2017-12-12
Release date:2018-06-20
Last modified:2019-11-27
Method:SOLUTION NMR
Cite:The Intracellular Loop of the Na+/Ca2+Exchanger Contains an "Awareness Ribbon"-Shaped Two-Helix Bundle Domain.
Biochemistry, 57, 2018
7CCE
DownloadVisualize
BU of 7cce by Molmil
crystal structure of Arabidopsis AIPP3 BAH domain in complex with an H3K27me3 peptide
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Bromo-adjacent homology (BAH) domain-containing protein, Histone H3.2
Authors:Yuan, J, Du, J.
Deposit date:2020-06-17
Release date:2020-12-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.404 Å)
Cite:Coupling of H3K27me3 recognition with transcriptional repression through the BAH-PHD-CPL2 complex in Arabidopsis.
Nat Commun, 11, 2020
7XPJ
DownloadVisualize
BU of 7xpj by Molmil
crystal structure of rice ASI1 BAH domain
Descriptor: BAH domain-containing protein
Authors:Yuan, J, Du, J.
Deposit date:2022-05-04
Release date:2023-01-11
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.301 Å)
Cite:Molecular basis of locus-specific H3K9 methylation catalyzed by SUVH6 in plants.
Proc.Natl.Acad.Sci.USA, 120, 2023
7XPK
DownloadVisualize
BU of 7xpk by Molmil
crystal structure of rice ASI1 BAH domain in complex with a rice SUVH6 peptide
Descriptor: Alpha-aminoacylpeptide hydrolase, BAH domain-containing protein
Authors:Yuan, J, Du, J.
Deposit date:2022-05-04
Release date:2023-01-11
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Molecular basis of locus-specific H3K9 methylation catalyzed by SUVH6 in plants.
Proc.Natl.Acad.Sci.USA, 120, 2023
1C15
DownloadVisualize
BU of 1c15 by Molmil
SOLUTION STRUCTURE OF APAF-1 CARD
Descriptor: APOPTOTIC PROTEASE ACTIVATING FACTOR 1
Authors:Zhou, P, Chou, J, Olea, R.S, Yuan, J, Wagner, G.
Deposit date:1999-07-20
Release date:1999-09-20
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution structure of Apaf-1 CARD and its interaction with caspase-9 CARD: a structural basis for specific adaptor/caspase interaction.
Proc.Natl.Acad.Sci.USA, 96, 1999
1Z9M
DownloadVisualize
BU of 1z9m by Molmil
Crystal Structure of Nectin-like molecule-1 protein Domain 1
Descriptor: GAPA225
Authors:Dong, X, Xu, F, Gong, Y, Gao, J, Lin, P, Chen, T, Peng, Y, Qiang, B, Yuan, J, Peng, X, Rao, Z.
Deposit date:2005-04-03
Release date:2006-02-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structure of the V Domain of Human Nectin-like Molecule-1/Syncam3/Tsll1/Igsf4b, a Neural Tissue-specific Immunoglobulin-like Cell-Cell Adhesion Molecule
J.Biol.Chem., 281, 2006
1P5T
DownloadVisualize
BU of 1p5t by Molmil
Crystal Structure of Dok1 PTB Domain
Descriptor: Docking protein 1
Authors:Shi, N, Ye, S, Liu, Y, Zhou, W, Ding, Y, Lou, Z, Qiang, B, Yuan, J, Rao, Z.
Deposit date:2003-04-28
Release date:2004-02-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural Basis for the Specific Recognition of RET by the Dok1 Phosphotyrosine Binding Domain
J.BIOL.CHEM., 279, 2004
2BID
DownloadVisualize
BU of 2bid by Molmil
HUMAN PRO-APOPTOTIC PROTEIN BID
Descriptor: PROTEIN (BID)
Authors:Chou, J.J, Li, H, Salvesen, G.S, Yuan, J, Wagner, G.
Deposit date:1999-01-27
Release date:2000-02-02
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of BID, an intracellular amplifier of apoptotic signaling.
Cell(Cambridge,Mass.), 96, 1999
1GH2
DownloadVisualize
BU of 1gh2 by Molmil
Crystal structure of the catalytic domain of a new human thioredoxin-like protein
Descriptor: THIOREDOXIN-LIKE PROTEIN
Authors:Jin, J, Chen, X, Guo, Q, Yuan, J, Qiang, B, Rao, Z.
Deposit date:2000-11-01
Release date:2001-05-01
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Crystal structure of the catalytic domain of a human thioredoxin-like protein.
Eur.J.Biochem., 269, 2002
2K0J
DownloadVisualize
BU of 2k0j by Molmil
Solution structure of CaM complexed to DRP1p
Descriptor: CALCIUM ION, LANTHANUM (III) ION, calmodulin
Authors:Bertini, I, Luchinat, C, Parigi, G, Yuan, J, Structural Proteomics in Europe (SPINE)
Deposit date:2008-02-04
Release date:2009-03-10
Last modified:2021-10-20
Method:SOLUTION NMR
Cite:Accurate solution structures of proteins from X-ray data and a minimal set of NMR data: calmodulin-peptide complexes as examples.
J.Am.Chem.Soc., 131, 2009
2K61
DownloadVisualize
BU of 2k61 by Molmil
Solution structure of CaM complexed to DAPk peptide
Descriptor: CALCIUM ION, Calmodulin, TERBIUM(III) ION
Authors:Bertini, I, Luchinat, C, Parigi, G, Yuan, J.
Deposit date:2008-07-02
Release date:2009-05-05
Last modified:2021-10-20
Method:SOLUTION NMR
Cite:Accurate solution structures of proteins from X-ray data and a minimal set of NMR data: calmodulin-peptide complexes as examples.
J.Am.Chem.Soc., 131, 2009
2K1I
DownloadVisualize
BU of 2k1i by Molmil
Synthesis, Structure and Activities of an Oral Mucosal Alpha-Defensin from Rhesus Macaque
Descriptor: Mucosal Alpha-Defensin
Authors:Vasudevan, S.V, Yuan, J, Osapay, G, Tran, P, Tai, K, Selsted, M, Cocco, M.J.
Deposit date:2008-03-05
Release date:2008-10-28
Last modified:2018-01-24
Method:SOLUTION NMR
Cite:Synthesis, structure, and activities of an oral mucosal alpha-defensin from rhesus macaque.
J.Biol.Chem., 283, 2008
2KAX
DownloadVisualize
BU of 2kax by Molmil
Solution structure and dynamics of S100A5 in the apo and Ca2+ -bound states
Descriptor: Protein S100-A5
Authors:Bertini, I, Das Gupta, S, Hu, X, Karavelas, T, Luchinat, C, Parigi, G, Yuan, J, Structural Proteomics in Europe (SPINE), Structural Proteomics in Europe 2 (SPINE-2)
Deposit date:2008-11-17
Release date:2009-06-30
Last modified:2020-09-16
Method:SOLUTION NMR
Cite:Solution structure and dynamics of S100A5 in the apo and Ca2+-bound states
J.Biol.Inorg.Chem., 14, 2009
2KAY
DownloadVisualize
BU of 2kay by Molmil
Solution structure and dynamics of S100A5 in the Ca2+ -bound states
Descriptor: CALCIUM ION, Protein S100-A5
Authors:Bertini, I, Das Gupta, S, Hu, X, Karavelas, T, Luchinat, C, Parigi, G, Yuan, J, Structural Proteomics in Europe (SPINE), Structural Proteomics in Europe 2 (SPINE-2)
Deposit date:2008-11-17
Release date:2009-06-30
Last modified:2020-09-16
Method:SOLUTION NMR
Cite:Solution structure and dynamics of S100A5 in the apo and Ca2+-bound states
J.Biol.Inorg.Chem., 14, 2009
5ZO1
DownloadVisualize
BU of 5zo1 by Molmil
Crystal structure of mouse nectin-like molecule 4 (mNecl-4) full ectodomain (Ig1-Ig3), 2.2A
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Cell adhesion molecule 4, GLYCEROL
Authors:Liu, X, An, T, Li, D, Fan, Z, Xiang, P, Li, C, Ju, W, Li, J, Hu, G, Qin, B, Yin, B, Wojdyla, J.A, Wang, M, Yuan, J, Qiang, B, Shu, P, Cui, S, Peng, X.
Deposit date:2018-04-12
Release date:2019-01-30
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.201 Å)
Cite:Structure of the heterophilic interaction between the nectin-like 4 and nectin-like 1 molecules.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
5ZO2
DownloadVisualize
BU of 5zo2 by Molmil
Crystal structure of mouse nectin-like molecule 4 (mNecl-4) full ectodomain in complex with mouse nectin-like molecule 1 (mNecl-1) Ig1 domain, 3.3A
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Cell adhesion molecule 3, Cell adhesion molecule 4
Authors:Liu, X, An, T, Li, D, Fan, Z, Xiang, P, Li, C, Ju, W, Li, J, Hu, G, Qin, B, Yin, B, Wojdyla, J.A, Wang, M, Yuan, J, Qiang, B, Shu, P, Cui, S, Peng, X.
Deposit date:2018-04-12
Release date:2019-01-30
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.29 Å)
Cite:Structure of the heterophilic interaction between the nectin-like 4 and nectin-like 1 molecules.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
3Q3T
DownloadVisualize
BU of 3q3t by Molmil
Alkyl Amine Renin Inhibitors: Filling S1 from S3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, ...
Authors:Wu, Z, McKeever, B.
Deposit date:2010-12-22
Release date:2011-08-03
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Biphenyl/diphenyl ether renin inhibitors: Filling the S1 pocket of renin via the S3 pocket.
Bioorg.Med.Chem.Lett., 21, 2011
2Z67
DownloadVisualize
BU of 2z67 by Molmil
Crystal structure of archaeal O-phosphoseryl-tRNA(Sec) selenium transferase (SepSecS)
Descriptor: O-phosphoseryl-tRNA(Sec) selenium transferase, PYRIDOXAL-5'-PHOSPHATE, SULFATE ION
Authors:Araiso, Y, Ishitani, R, Pailouer, S, Oshikane, H, Domae, N, Soll, D, Nureki, O.
Deposit date:2007-07-23
Release date:2008-04-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural insights into RNA-dependent eukaryal and archaeal selenocysteine formation.
Nucleic Acids Res., 36, 2008
7BWJ
DownloadVisualize
BU of 7bwj by Molmil
crystal structure of SARS-CoV-2 antibody with RBD
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S1, antibody heavy chain, ...
Authors:Wang, X, Ge, J.
Deposit date:2020-04-14
Release date:2020-06-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Human neutralizing antibodies elicited by SARS-CoV-2 infection.
Nature, 584, 2020
4M5E
DownloadVisualize
BU of 4m5e by Molmil
Tse3 structure
Descriptor: CADMIUM ION, CALCIUM ION, GLYCEROL, ...
Authors:Qian, Y.
Deposit date:2013-08-08
Release date:2014-04-23
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Structural insights into the T6SS effector protein Tse3 and the Tse3-Tsi3 complex from Pseudomonas aeruginosa reveal a calcium-dependent membrane-binding mechanism
Mol.Microbiol., 92, 2014
4M5F
DownloadVisualize
BU of 4m5f by Molmil
complex structure of Tse3-Tsi3
Descriptor: CALCIUM ION, PHOSPHATE ION, Uncharacterized protein
Authors:Gu, L.C.
Deposit date:2013-08-08
Release date:2014-04-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural insights into the T6SS effector protein Tse3 and the Tse3-Tsi3 complex from Pseudomonas aeruginosa reveal a calcium-dependent membrane-binding mechanism
Mol.Microbiol., 92, 2014
4N7S
DownloadVisualize
BU of 4n7s by Molmil
Crystal structure of Tse3-Tsi3 complex with Zinc ion
Descriptor: ACETATE ION, CALCIUM ION, CHLORIDE ION, ...
Authors:Shang, G.J.
Deposit date:2013-10-16
Release date:2014-04-23
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.101 Å)
Cite:Structural insights into the T6SS effector protein Tse3 and the Tse3-Tsi3 complex from Pseudomonas aeruginosa reveal a calcium-dependent membrane-binding mechanism
Mol.Microbiol., 92, 2014
4N88
DownloadVisualize
BU of 4n88 by Molmil
Crystal structure of Tse3-Tsi3 complex with calcium ion
Descriptor: CALCIUM ION, Uncharacterized protein
Authors:Shang, G.J.
Deposit date:2013-10-17
Release date:2014-04-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural insights into the T6SS effector protein Tse3 and the Tse3-Tsi3 complex from Pseudomonas aeruginosa reveal a calcium-dependent membrane-binding mechanism
Mol.Microbiol., 92, 2014
4N80
DownloadVisualize
BU of 4n80 by Molmil
Crystal structure of Tse3-Tsi3 complex
Descriptor: CALCIUM ION, Uncharacterized protein, ZINC ION
Authors:Shang, G.J.
Deposit date:2013-10-16
Release date:2014-04-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural insights into the T6SS effector protein Tse3 and the Tse3-Tsi3 complex from Pseudomonas aeruginosa reveal a calcium-dependent membrane-binding mechanism
Mol.Microbiol., 92, 2014
1UEF
DownloadVisualize
BU of 1uef by Molmil
Crystal Structure of Dok1 PTB Domain Complex
Descriptor: 13-mer peptide from Proto-oncogene tyrosine-protein kinase receptor ret, Docking protein 1
Authors:Shi, N, Ye, S, Liu, Y, Zhou, W, Ding, Y, Lou, Z, Qiang, B, Yan, J, Rao, Z.
Deposit date:2003-05-14
Release date:2004-05-25
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural Basis for the Specific Recognition of RET by the Dok1 Phosphotyrosine Binding Domain
J.Biol.Chem., 279, 2004

 

123>

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon