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6IOS
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BU of 6ios by Molmil
The ligand binding domain of Mlp24 with proline
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, CALCIUM ION, ...
Authors:Takahashi, Y, Sumita, K, Nishiyama, S, Kawagishi, I, Imada, K.
Deposit date:2018-10-31
Release date:2019-03-06
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Calcium Ions Modulate Amino Acid Sensing of the Chemoreceptor Mlp24 ofVibrio cholerae.
J. Bacteriol., 201, 2019
6IOV
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BU of 6iov by Molmil
The ligand binding domain of Mlp37 with arginine
Descriptor: ARGININE, Methyl-accepting chemotaxis (MCP) signaling domain protein
Authors:Takahashi, Y, Sumita, K, Nishiyama, S, Kawagishi, I, Imada, K.
Deposit date:2018-10-31
Release date:2019-11-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.351 Å)
Cite:Structural basis of the binding affinity of chemoreceptors Mlp24p and Mlp37p for various amino acids.
Biochem.Biophys.Res.Commun., 523, 2020
6IOT
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BU of 6iot by Molmil
The ligand binding domain of Mlp24 with arginine
Descriptor: ARGININE, CALCIUM ION, Methyl-accepting chemotaxis protein
Authors:Takahashi, Y, Sumita, K, Nishiyama, S, Kawagishi, I, Imada, K.
Deposit date:2018-10-31
Release date:2019-03-20
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Calcium Ions Modulate Amino Acid Sensing of the Chemoreceptor Mlp24 ofVibrio cholerae.
J. Bacteriol., 201, 2019
6IOR
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BU of 6ior by Molmil
The ligand binding domain of Mlp24 with asparagine
Descriptor: ASPARAGINE, CALCIUM ION, Methyl-accepting chemotaxis protein
Authors:Takahashi, Y, Sumita, K, Nishiyama, S, Kawagishi, I, Imada, K.
Deposit date:2018-10-31
Release date:2019-03-20
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Calcium Ions Modulate Amino Acid Sensing of the Chemoreceptor Mlp24 ofVibrio cholerae.
J. Bacteriol., 201, 2019
6IOQ
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BU of 6ioq by Molmil
The ligand binding domain of Mlp24 with glycine
Descriptor: CALCIUM ION, GLYCINE, Methyl-accepting chemotaxis protein
Authors:Takahashi, Y, Sumita, K, Nishiyama, S, Kawagishi, I, Imada, K.
Deposit date:2018-10-31
Release date:2019-03-06
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.143 Å)
Cite:Calcium Ions Modulate Amino Acid Sensing of the Chemoreceptor Mlp24 ofVibrio cholerae.
J. Bacteriol., 201, 2019
6IOU
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BU of 6iou by Molmil
The ligand binding domain of Mlp24 with serine
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, Methyl-accepting chemotaxis protein, ...
Authors:Takahashi, Y, Sumita, K, Nishiyama, S, Kawagishi, I, Imada, K.
Deposit date:2018-10-31
Release date:2019-03-06
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Calcium Ions Modulate Amino Acid Sensing of the Chemoreceptor Mlp24 ofVibrio cholerae.
J. Bacteriol., 201, 2019
5AVE
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BU of 5ave by Molmil
The ligand binding domain of Mlp37 with serine
Descriptor: Methyl-accepting chemotaxis (MCP) signaling domain protein, SERINE
Authors:Takahashi, Y, Sumita, K, Uchida, Y, Nishiyama, S, Kawagishi, I, Imada, K.
Deposit date:2015-06-15
Release date:2016-03-02
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Identification of a Vibrio cholerae chemoreceptor that senses taurine and amino acids as attractants
Sci Rep, 6, 2016
5AVF
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BU of 5avf by Molmil
The ligand binding domain of Mlp37 with taurine
Descriptor: 2-AMINOETHANESULFONIC ACID, Methyl-accepting chemotaxis (MCP) signaling domain protein
Authors:Takahashi, Y, Sumita, K, Uchida, Y, Nishiyama, S, Kawagishi, I, Imada, K.
Deposit date:2015-06-15
Release date:2016-06-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Identification of a Vibrio cholerae chemoreceptor that senses taurine and amino acids as attractants
Sci Rep, 6, 2016
5ETY
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BU of 5ety by Molmil
Crystal Structure of human Tankyrase-1 bound to K-756
Descriptor: 3-[[1-(6,7-dimethoxyquinazolin-4-yl)piperidin-4-yl]methyl]-1,4-dihydroquinazolin-2-one, Tankyrase-1, ZINC ION
Authors:Takahashi, Y, Miyagi, H, Suzuki, M, Saito, J.
Deposit date:2015-11-18
Release date:2016-06-22
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The Discovery and Characterization of K-756, a Novel Wnt/ beta-Catenin Pathway Inhibitor Targeting Tankyrase
Mol.Cancer Ther., 15, 2016
6IOP
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BU of 6iop by Molmil
The ligand binding domain of Mlp24
Descriptor: ACETATE ION, ALANINE, CALCIUM ION, ...
Authors:Sumita, K, Takahashi, Y, Nishiyama, S, Kawagishi, I, Imada, K.
Deposit date:2018-10-31
Release date:2019-03-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Calcium Ions Modulate Amino Acid Sensing of the Chemoreceptor Mlp24 ofVibrio cholerae.
J. Bacteriol., 201, 2019
7CE4
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BU of 7ce4 by Molmil
Tankyrase2 catalytic domain in complex with K-476
Descriptor: 5-[3-[[1-(6,7-dimethoxyquinazolin-4-yl)piperidin-4-yl]methyl]-2-oxidanylidene-4H-quinazolin-1-yl]-2-fluoranyl-benzenecarbonitrile, Poly [ADP-ribose] polymerase tankyrase-2, SULFATE ION, ...
Authors:Takahashi, Y, Suzuki, M, Saito, J.
Deposit date:2020-06-22
Release date:2021-05-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The dual pocket binding novel tankyrase inhibitor K-476 enhances the efficacy of immune checkpoint inhibitor by attracting CD8 + T cells to tumors.
Am J Cancer Res, 11, 2021
6AD9
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BU of 6ad9 by Molmil
Crystal Structure of PPARgamma Ligand Binding Domain in complex with dibenzooxepine derivative compound-9
Descriptor: 12-mer peptide from Peroxisome proliferator-activated receptor gamma coactivator 1-alpha, 3-[(1E)-1-{8-[(4-methyl-2-propyl-1H-benzimidazol-1-yl)methyl]dibenzo[b,e]oxepin-11(6H)-ylidene}ethyl]-1,2,4-oxadiazol-5(4H)-one, Peroxisome proliferator-activated receptor gamma
Authors:Takahashi, Y, Suzuki, M, Yamamoto, K, Saito, J.
Deposit date:2018-07-31
Release date:2018-11-14
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Development of Dihydrodibenzooxepine Peroxisome Proliferator-Activated Receptor (PPAR) Gamma Ligands of a Novel Binding Mode as Anticancer Agents: Effective Mimicry of Chiral Structures by Olefinic E/ Z-Isomers.
J. Med. Chem., 61, 2018
7C6B
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BU of 7c6b by Molmil
Crystal structure of Ago2 MID domain in complex with 6-(3-(2-carboxyethyl)phenyl)purine riboside monophosphate
Descriptor: 3-[3-[9-[(2R,3R,4S,5R)-3,4-bis(oxidanyl)-5-(phosphonooxymethyl)oxolan-2-yl]purin-6-yl]phenyl]propanoic acid, PHOSPHATE ION, Protein argonaute-2
Authors:Suzuki, M, Takahashi, Y, Saito, J, Miyagi, H, Shinohara, F.
Deposit date:2020-05-21
Release date:2020-11-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:siRNA potency enhancement via chemical modifications of nucleotide bases at the 5'-end of the siRNA guide strand.
Rna, 27, 2021
7C6A
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BU of 7c6a by Molmil
Crystal structure of AT2R-BRIL and SRP2070_Fab complex
Descriptor: IgG Light Chain, IgG heavy chain, SAR1, ...
Authors:Suzuki, M, Miyagi, H, Asada, H, Yasunaga, M, Suno, C, Takahashi, Y, Saito, J, Iwata, S.
Deposit date:2020-05-21
Release date:2020-07-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:The discovery of a new antibody for BRIL-fused GPCR structure determination.
Sci Rep, 10, 2020
1IQZ
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BU of 1iqz by Molmil
OXIDIZED [4Fe-4S] FERREDOXIN FROM BACILLUS THERMOPROTEOLYTICUS (FORM I)
Descriptor: Ferredoxin, IRON/SULFUR CLUSTER, SULFATE ION
Authors:Fukuyama, K, Okada, T, Kakuta, Y, Takahashi, Y.
Deposit date:2001-08-30
Release date:2002-02-13
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (0.92 Å)
Cite:Atomic resolution structures of oxidized [4Fe-4S] ferredoxin from Bacillus thermoproteolyticus in two crystal forms: systematic distortion of [4Fe-4S] cluster in the protein.
J.Mol.Biol., 315, 2002
1IR0
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BU of 1ir0 by Molmil
OXIDIZED [4Fe-4S] FERREDOXIN FROM BACILLUS THERMOPROTEOLYTICUS (FORM II)
Descriptor: Ferredoxin, IRON/SULFUR CLUSTER, SULFATE ION
Authors:Fukuyama, K, Okada, T, Kakuta, Y, Takahashi, Y.
Deposit date:2001-08-30
Release date:2002-02-13
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1 Å)
Cite:Atomic resolution structures of oxidized [4Fe-4S] ferredoxin from Bacillus thermoproteolyticus in two crystal forms: systematic distortion of [4Fe-4S] cluster in the protein.
J.Mol.Biol., 315, 2002
5H41
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BU of 5h41 by Molmil
Crystal Structure of 1,2-beta-oligoglucan phosphorylase from Lachnoclostridium phytofermentans in complex with sophorose, isofagomine, sulfate ion
Descriptor: 5-HYDROXYMETHYL-3,4-DIHYDROXYPIPERIDINE, SULFATE ION, Uncharacterized protein, ...
Authors:Nakajima, M, Tanaka, N, Furukawa, N, Nihira, T, Kodutsumi, Y, Takahashi, Y, Sugimoto, N, Miyanaga, A, Fushinobu, S, Taguchi, H, Nakai, H.
Deposit date:2016-10-28
Release date:2017-03-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Mechanistic insight into the substrate specificity of 1,2-beta-oligoglucan phosphorylase from Lachnoclostridium phytofermentans
Sci Rep, 7, 2017
5H40
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BU of 5h40 by Molmil
Crystal Structure of 1,2-beta-oligoglucan phosphorylase from Lachnoclostridium phytofermentans in complex with sophorose
Descriptor: CALCIUM ION, GLYCEROL, Uncharacterized protein, ...
Authors:Nakajima, M, Tanaka, N, Furukawa, N, Nihira, T, Kodutsumi, Y, Takahashi, Y, Sugimoto, N, Miyanaga, A, Fushinobu, S, Taguchi, H, Nakai, H.
Deposit date:2016-10-28
Release date:2017-03-01
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Mechanistic insight into the substrate specificity of 1,2-beta-oligoglucan phosphorylase from Lachnoclostridium phytofermentans
Sci Rep, 7, 2017
5H3Z
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BU of 5h3z by Molmil
Crystal Structure of 1,2-beta-oligoglucan phosphorylase from Lachnoclostridium phytofermentans
Descriptor: CALCIUM ION, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Nakajima, M, Tanaka, N, Furukawa, N, Nihira, T, Kodutsumi, Y, Takahashi, Y, Sugimoto, N, Miyanaga, A, Fushinobu, S, Taguchi, H, Nakai, H.
Deposit date:2016-10-28
Release date:2017-03-01
Last modified:2020-02-26
Method:X-RAY DIFFRACTION (2 Å)
Cite:Mechanistic insight into the substrate specificity of 1,2-beta-oligoglucan phosphorylase from Lachnoclostridium phytofermentans
Sci Rep, 7, 2017
5H42
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BU of 5h42 by Molmil
Crystal Structure of 1,2-beta-oligoglucan phosphorylase from Lachnoclostridium phytofermentans in complex with alpha-d-glucose-1-phosphate
Descriptor: 1-O-phosphono-alpha-D-glucopyranose, Uncharacterized protein, alpha-D-glucopyranose
Authors:Nakajima, M, Tanaka, N, Furukawa, N, Nihira, T, Kodutsumi, Y, Takahashi, Y, Sugimoto, N, Miyanaga, A, Fushinobu, S, Taguchi, H, Nakai, H.
Deposit date:2016-10-28
Release date:2017-03-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Mechanistic insight into the substrate specificity of 1,2-beta-oligoglucan phosphorylase from Lachnoclostridium phytofermentans
Sci Rep, 7, 2017
1KW6
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BU of 1kw6 by Molmil
Crystal structure of 2,3-dihydroxybiphenyl dioxygenase (BphC) in complex with 2,3-dihydroxybiphenyl at 1.45 A resolution
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2,3-Dihydroxybiphenyl dioxygenase, BIPHENYL-2,3-DIOL, ...
Authors:Sato, N, Uragami, Y, Nishizaki, T, Takahashi, Y, Sazaki, G, Sugimoto, K, Nonaka, T, Masai, E, Fukuda, M, Senda, T.
Deposit date:2002-01-28
Release date:2003-01-28
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase
J.Mol.Biol., 321, 2002
1KW3
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BU of 1kw3 by Molmil
Crystal structure of 2,3-dihydroxybiphenyal dioxygenase (BphC) at 1.45 A resolution
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2,3-Dihydroxybiphenyl dioxygenase, FE (II) ION
Authors:Sato, N, Uragami, Y, Nishizaki, T, Takahashi, Y, Sazaki, G, Sugimoto, K, Nonaka, T, Masai, E, Fukuda, M, Senda, T.
Deposit date:2002-01-28
Release date:2003-01-28
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase
J.Mol.Biol., 321, 2002
1KWC
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BU of 1kwc by Molmil
The His145Ala mutant of 2,3-dihydroxybiphenyl dioxygenase in complex with 2,3-dihydroxybiphenyl
Descriptor: 2,3-dihydroxybiphenyl dioxygenase, BIPHENYL-2,3-DIOL
Authors:Sato, N, Uragami, Y, Nishizaki, T, Takahashi, Y, Sazaki, G, Sugimoto, K, Nonaka, T, Masai, E, Fukuda, M, Senda, T.
Deposit date:2002-01-29
Release date:2003-01-29
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase
J.Mol.Biol., 321, 2002
1KW9
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BU of 1kw9 by Molmil
Crystal structure of 2,3-dihydroxybiphenyl dioxygenase (BphC) in complex with 2,3-dihydroxybiphenyl at 2.0A resolution
Descriptor: 2,3-Dihydroxybiphenyl dioxygenase, BIPHENYL-2,3-DIOL, FE (II) ION
Authors:Sato, N, Uragami, Y, Nishizaki, T, Takahashi, Y, Sazaki, G, Sugimoto, K, Nonaka, T, Masai, E, Fukuda, M, Senda, T.
Deposit date:2002-01-29
Release date:2003-01-29
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase
J.Mol.Biol., 321, 2002
1KWB
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BU of 1kwb by Molmil
Crystal structure of the His145Ala mutant of 2,3-dihydroxybipheny dioxygenase (BphC)
Descriptor: 2,3-Dihydroxybiphenyl dioxygenase
Authors:Sato, N, Uragami, Y, Nishizaki, T, Takahashi, Y, Sazaki, G, Sugimoto, K, Nonaka, T, Masai, E, Fukuda, M, Senda, T.
Deposit date:2002-01-29
Release date:2003-01-29
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase
J.Mol.Biol., 321, 2002

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