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3DPR
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BU of 3dpr by Molmil
Human rhinovirus 2 bound to a concatamer of the VLDL receptor module V3
Descriptor: CALCIUM ION, LAURIC ACID, LDL-receptor class A 3, ...
Authors:Querol-Audi, J, Pous, J, Fita, I, Verdaguer, N.
Deposit date:2008-07-09
Release date:2009-04-07
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Minor group human rhinovirus-receptor interactions: geometry of multimodular attachment and basis of recognition
Febs Lett., 583, 2009
3GF5
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BU of 3gf5 by Molmil
Crystal structure of the P21 R1-R7 N-terminal domain of murine MVP
Descriptor: GLYCEROL, Major vault protein
Authors:Querol-Audi, J, Casanas, A, Luque, D, Caston, J.R, Fita, I, Verdaguer, N.
Deposit date:2009-02-26
Release date:2009-11-10
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The mechanism of vault opening from the high resolution structure of the N-terminal repeats of MVP
Embo J., 28, 2009
3GNG
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BU of 3gng by Molmil
P21B crystal structure of R1-R7 of Murine MVP
Descriptor: Major vault protein
Authors:Querol-Audi, J, Casanas, A, Uson, I, Caston, J.R, Fita, I, Verdaguer, N.
Deposit date:2009-03-17
Release date:2009-11-10
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3 Å)
Cite:The mechanism of vault opening from the high resolution structure of the N-terminal repeats of MVP
Embo J., 28, 2009
3GNF
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BU of 3gnf by Molmil
P1 Crystal structure of the N-terminal R1-R7 of murine MVP
Descriptor: Major vault protein
Authors:Querol-Audi, J, Casanas, A, Uson, I, Luque, D, Caston, J.R, Fita, I, Verdaguer, N.
Deposit date:2009-03-17
Release date:2009-11-10
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The mechanism of vault opening from the high resolution structure of the N-terminal repeats of MVP
Embo J., 28, 2009
4PDW
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BU of 4pdw by Molmil
A benzonitrile analogue inhibits rhinovirus replication
Descriptor: 4-[(4,5-dimethoxy-2-nitrophenyl)acetyl]benzonitrile, Capsid protein VP4/VP2, GLYCEROL, ...
Authors:Querol-Audi, J, Guerra, P, Lacroix, C, Roche, M, Franco, D, Froeyen, M, Terme, T, Vanelle, P, Neyts, J, Leyssen, P, Verdaguer, N.
Deposit date:2014-04-22
Release date:2014-07-02
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:A novel benzonitrile analogue inhibits rhinovirus replication.
J.Antimicrob.Chemother., 69, 2014
5ME6
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BU of 5me6 by Molmil
Crystal Structure of eiF4E from C. melo bound to a CAP analog
Descriptor: 7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE, Eukaryotic transcription initiation factor 4E
Authors:Querol-Audi, J, Silva, C, Miras, M, Aranda-Regules, M, Verdaguer, N.
Deposit date:2016-11-14
Release date:2017-08-23
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure of eIF4E in Complex with an eIF4G Peptide Supports a Universal Bipartite Binding Mode for Protein Translation.
Plant Physiol., 174, 2017
5ME7
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BU of 5me7 by Molmil
Crystal Structure of eiF4E from C. melo
Descriptor: Eukaryotic transcription initiation factor 4E, GLYCEROL
Authors:Querol-Audi, J, Silva, C, Miras, M, Aranda-Regules, M, Verdaguer, N.
Deposit date:2016-11-14
Release date:2017-08-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of eIF4E in Complex with an eIF4G Peptide Supports a Universal Bipartite Binding Mode for Protein Translation.
Plant Physiol., 174, 2017
5ME5
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BU of 5me5 by Molmil
Crystal Structure of eiF4E from C. melo bound to a eIF4G peptide
Descriptor: Eukaryotic transcription initiation factor 4E, SULFATE ION, eIF4G
Authors:Querol-Audi, J, Silva, C, Miras, M, Truniger, V, Aranda-Regules, M, Verdaguer, N.
Deposit date:2016-11-14
Release date:2017-08-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of eIF4E in Complex with an eIF4G Peptide Supports a Universal Bipartite Binding Mode for Protein Translation.
Plant Physiol., 174, 2017
4HL8
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BU of 4hl8 by Molmil
Re-refinement of the vault ribonucleoprotein particle
Descriptor: Major vault protein
Authors:Casanas, A, Querol-Audi, J, Guerra, P, Pous, J, Tanaka, H, Tsukihara, T, Verdaguer, V, Fita, I.
Deposit date:2012-10-16
Release date:2013-06-05
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:New features of vault architecture and dynamics revealed by novel refinement using the deformable elastic network approach.
Acta Crystallogr.,Sect.D, 69, 2013
2GSY
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BU of 2gsy by Molmil
The 2.6A structure of Infectious Bursal Virus Derived T=1 Particles
Descriptor: CALCIUM ION, polyprotein
Authors:Garriga, D, Querol-Audi, J, Abaitua, F, Saugar, I, Pous, J, Verdaguer, N, Caston, J.R, Rodriguez, J.F.
Deposit date:2006-04-27
Release date:2006-07-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The 2.6-angstrom structure of infectious bursal disease virus-derived t=1 particles reveals new stabilizing elements of the virus capsid.
J.Virol., 80, 2006
4ZPY
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BU of 4zpy by Molmil
Structure of N170A MVM mutant empty capsid
Descriptor: VP1 protein
Authors:Guerra, P, Querol-Audi, J, Silva, C, Mateu, M.G, Verdaguer, N.
Deposit date:2015-05-08
Release date:2017-05-24
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Structural basis for biologically relevant mechanical stiffening of a virus capsid by cavity-creating or spacefilling mutations.
Sci Rep, 7, 2017
4L3B
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BU of 4l3b by Molmil
X-ray structure of the HRV2 A particle uncoating intermediate
Descriptor: Protein VP1, Protein VP2, Protein VP3
Authors:Vives-Adrian, L, Querol-Audi, J, Garriga, D, Pous, J, Verdaguer, N.
Deposit date:2013-06-05
Release date:2013-11-27
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (6.5 Å)
Cite:Uncoating of common cold virus is preceded by RNA switching as determined by X-ray and cryo-EM analyses of the subviral A-particle.
Proc.Natl.Acad.Sci.USA, 110, 2013
7PKZ
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BU of 7pkz by Molmil
Vault structure in committed conformation
Descriptor: Major vault protein
Authors:Guerra, P, Gonzalez-Alamos, M, Llauro, A, Casanas, A, Querol-Audi, J, de Pablo, P, Verdaguer, N.
Deposit date:2021-08-27
Release date:2022-03-16
Method:ELECTRON MICROSCOPY (9.8 Å)
Cite:Symmetry disruption commits vault particles to disassembly.
Sci Adv, 8, 2022
7PKR
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BU of 7pkr by Molmil
Vault structure in primmed conformation
Descriptor: Major vault protein
Authors:Guerra, P, Gonzalez-Alamos, M, Llauro, A, Casanas, A, Querol-Audi, J, de Pablo, P, Verdaguer, N.
Deposit date:2021-08-26
Release date:2022-03-16
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Symmetry disruption commits vault particles to disassembly.
Sci Adv, 8, 2022
7PKY
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BU of 7pky by Molmil
Half-vault structure
Descriptor: Major vault protein
Authors:Guerra, P, Gonzalez-Alamos, M, Llauro, A, Casanas, A, Querol-Audi, J, de Pablo, P, Verdaguer, N.
Deposit date:2021-08-27
Release date:2022-03-23
Method:ELECTRON MICROSCOPY (7.9 Å)
Cite:Symmetry disruption commits vault particles to disassembly.
Sci Adv, 8, 2022
3B6O
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BU of 3b6o by Molmil
Structure of TREX1 in complex with a nucleotide and an inhibitor ion (lithium)
Descriptor: LITHIUM ION, THYMIDINE-5'-PHOSPHATE, Three prime repair exonuclease 1
Authors:Brucet, M, Querol-Audi, J, Fita, I, Celada, A.
Deposit date:2007-10-29
Release date:2008-09-23
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and biochemical studies of TREX1 inhibition by metals. Identification of a new active histidine conserved in DEDDh exonucleases.
Protein Sci., 17, 2008
3B6P
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BU of 3b6p by Molmil
Structure of TREX1 in complex with a nucleotide and inhibitor ions (sodium and zinc)
Descriptor: SODIUM ION, THYMIDINE-5'-PHOSPHATE, Three prime repair exonuclease 1, ...
Authors:Brucet, M, Querol-Audi, J, Fita, I, Celada, A.
Deposit date:2007-10-29
Release date:2008-09-23
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural and biochemical studies of TREX1 inhibition by metals. Identification of a new active histidine conserved in DEDDh exonucleases.
Protein Sci., 17, 2008
3GPE
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BU of 3gpe by Molmil
Crystal Structure Analysis of PKC (alpha)-C2 domain complexed with Ca2+ and PtdIns(4,5)P2
Descriptor: CALCIUM ION, PHOSPHATE ION, Protein kinase C alpha type, ...
Authors:Ferrer-Orta, C, Querol-Audi, J, Fita, I, Verdaguer, N.
Deposit date:2009-03-23
Release date:2009-05-05
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and mechanistic insights into the association of PKCalpha-C2 domain to PtdIns(4,5)P2.
Proc.Natl.Acad.Sci.USA, 106, 2009
2PMP
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BU of 2pmp by Molmil
Structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase from the isoprenoid biosynthetic pathway of Arabidopsis thaliana
Descriptor: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, CHLORIDE ION, CYTIDINE-5'-MONOPHOSPHATE, ...
Authors:Calisto, B.M, Perez-Gil, J, Querol-Audi, J, Fita, I, Imperial, S.
Deposit date:2007-04-23
Release date:2007-09-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Biosynthesis of isoprenoids in plants: Structure of the 2C-methyl-D-erithrytol 2,4-cyclodiphosphate synthase from Arabidopsis thaliana. Comparison with the bacterial enzymes.
Protein Sci., 16, 2007
2PUS
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BU of 2pus by Molmil
Unprecedented activation mechanism of a non-canonical RNA-dependent RNA polymerase
Descriptor: IBDV VP1 RNA-dependant RNA polymerase
Authors:Garriga, D, Navarro, A, Querol-Audi, J, Abaitua, F, Rodriguez, J.F, Verdaguer, N.
Deposit date:2007-05-09
Release date:2007-11-27
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Activation mechanism of a noncanonical RNA-dependent RNA polymerase.
Proc.Natl.Acad.Sci.Usa, 104, 2007
2QJ1
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BU of 2qj1 by Molmil
Crystal structure of infectious bursal disease virus VP1 polymerase incubated with an oligopeptide mimicking the VP3 C-terminus
Descriptor: Infectious bursal disease virus VP1 polymerase
Authors:Garriga, D, Navarro, A, Querol-Audi, J, Abaitua, F, Rodriguez, J.F, Verdaguer, N.
Deposit date:2007-07-06
Release date:2007-11-27
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.48 Å)
Cite:Unprecedented activation mechanism of a non-canonical RNA-dependent RNA polymerase
To be Published
2R70
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BU of 2r70 by Molmil
Crystal structure of infectious bursal disease virus VP1 polymerase, cocrystallized with an oligopeptide mimicking the VP3 C-terminus.
Descriptor: INFECTIOUS BURSAL VIRUS VP1 POLYMERASE
Authors:Garriga, D, Navarro, A, Querol-Audi, J, Abaitua, F, Rodriguez, J.F, Verdaguer, N.
Deposit date:2007-09-07
Release date:2007-11-27
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Activation mechanism of a noncanonical RNA-dependent RNA polymerase.
Proc.Natl.Acad.Sci.Usa, 104, 2007
2R72
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BU of 2r72 by Molmil
Crystal structure of infectious bursal disease virus VP1 polymerase, incubated with Mg2+ ion.
Descriptor: INFECTIOUS BURSAL DISEASE VIRUS VP1 POLYMERASE, MAGNESIUM ION
Authors:Garriga, D, Navarro, A, Querol-Audi, J, Abaitua, F, Rodriguez, J.F, Verdaguer, N.
Deposit date:2007-09-07
Release date:2007-11-27
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Activation mechanism of a noncanonical RNA-dependent RNA polymerase.
Proc.Natl.Acad.Sci.Usa, 104, 2007
2O4I
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BU of 2o4i by Molmil
Structure of TREX1 in complex with DNA
Descriptor: 5'-D(*GP*CP*TP*AP*GP*GP*CP*AP*GP*GP*AP*AP*CP*CP*CP*CP*TP*CP*CP*TP*CP*CP*CP*CP*T)-3', Three prime repair exonuclease 1
Authors:Brucet, M, Macias, M.J, Fita, I, Celada, A.
Deposit date:2006-12-04
Release date:2007-03-13
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structure of the dimeric exonuclease TREX1 in complex with DNA displays a proline-rich binding site for WW Domains.
J.Biol.Chem., 282, 2007
2O4G
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BU of 2o4g by Molmil
Structure of TREX1 in complex with a nucleotide
Descriptor: MAGNESIUM ION, THYMIDINE-5'-PHOSPHATE, Three prime repair exonuclease 1
Authors:Brucet, M, Macias, M.J, Fita, I, Celada, A.
Deposit date:2006-12-04
Release date:2007-03-13
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structure of the dimeric exonuclease TREX1 in complex with DNA displays a proline-rich binding site for WW Domains.
J.Biol.Chem., 282, 2007

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