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5LI4
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BU of 5li4 by Molmil
bacteriophage phi812K1-420 tail sheath protein after contraction
Descriptor: tail sheath protein
Authors:Novacek, J, Siborova, M, Benesik, M, Pantucek, R, Doskar, J, Plevka, P.
Deposit date:2016-07-14
Release date:2017-07-19
Last modified:2020-09-16
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Structure and genome release of Twort-like Myoviridae phage with a double-layered baseplate.
Proc. Natl. Acad. Sci. U.S.A., 113, 2016
5LI2
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BU of 5li2 by Molmil
bacteriophage phi812K1-420 tail sheath and tail tube protein in native tail
Descriptor: Phage-like element PBSX protein XkdM, tail sheath protein
Authors:Novacek, J, Siborova, M, Benesik, M, Pantucek, R, Doskar, J, Plevka, P.
Deposit date:2016-07-14
Release date:2017-07-19
Last modified:2020-09-16
Method:ELECTRON MICROSCOPY (6.2 Å)
Cite:Structure and genome release of Twort-like Myoviridae phage with a double-layered baseplate.
Proc. Natl. Acad. Sci. U.S.A., 113, 2016
5LIJ
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BU of 5lij by Molmil
polyalanine chain built in bacteriophage phi812K1-420 cement protein density map
Descriptor: polyalanine chain built in bacteriophage phi812K1-420 cement protein density map
Authors:Novacek, J, Siborova, M, Benesik, M, Pantucek, R, Doskar, J, Plevka, P.
Deposit date:2016-07-14
Release date:2017-07-26
Last modified:2019-12-11
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Structure and genome release of Twort-like Myoviridae phage with a double-layered baseplate.
Proc. Natl. Acad. Sci. U.S.A., 113, 2016
5LII
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BU of 5lii by Molmil
bacteriophage phi812K1-420 major capsid protein
Descriptor: Major capsid protein
Authors:Novacek, J, Siborova, M, Benesik, M, Pantucek, R, Doskar, J, Plevka, P.
Deposit date:2016-07-14
Release date:2017-07-19
Last modified:2019-12-11
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structure and genome release of Twort-like Myoviridae phage with a double-layered baseplate.
Proc. Natl. Acad. Sci. U.S.A., 113, 2016
2KRC
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BU of 2krc by Molmil
Solution structure of the N-terminal domain of Bacillus subtilis delta subunit of RNA polymerase
Descriptor: DNA-directed RNA polymerase subunit delta
Authors:Motackova, V, Sanderova, H, Zidek, L, Novacek, J, Padrta, P, Svenkova, A, Jonak, J, Krasny, L, Sklenar, V.
Deposit date:2009-12-16
Release date:2010-04-07
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Solution structure of the N-terminal domain of Bacillus subtilis delta subunit of RNA polymerase and its classification based on structural homologs
Proteins, 78, 2010
5A8F
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BU of 5a8f by Molmil
Structure and genome release mechanism of human cardiovirus Saffold virus-3
Descriptor: GENOME POLYPHUMAN SAFFOLD VIRUS-3 VP3 PROTEIN, HUMAN SAFFOLD VIRUS-3 VP1, HUMAN SAFFOLD VIRUS-3 VP2
Authors:Mullapudi, E, Novacek, J, Palkova, L, Kulich, P, Lindberg, M, vanKuppeveld, F.J.M, Plevka, P.
Deposit date:2015-07-15
Release date:2016-06-08
Last modified:2019-10-30
Method:ELECTRON MICROSCOPY (10.6 Å)
Cite:Structure and Genome Release Mechanism of Human Cardiovirus Saffold Virus-3.
J.Virol., 90, 2016
5O1Q
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BU of 5o1q by Molmil
LysF1 sh3b domain structure
Descriptor: sh3b domain
Authors:Benesik, M, Novacek, J, Janda, L, Dopitova, R, Pernisova, M, Melkova, K, Tisakova, L, Doskar, J, Zidek, L, Hejatko, J, Pantucek, R.
Deposit date:2017-05-19
Release date:2017-09-20
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Role of SH3b binding domain in a natural deletion mutant of Kayvirus endolysin LysF1 with a broad range of lytic activity.
Virus Genes, 54, 2018
6S47
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BU of 6s47 by Molmil
Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
Descriptor: 18S rRNA (1707-MER), 28S ribosomal RNA, 40S ribosomal protein S0-A, ...
Authors:Kasari, V, Pochopien, A.A, Margus, T, Murina, V, Turnbull, K, Zhou, Y, Nissan, T, Graf, M, Novacek, J, Atkinson, G.C, Johansson, M.J.O, Wilson, D.N, Hauryliuk, V.
Deposit date:2019-06-26
Release date:2019-07-24
Last modified:2019-10-23
Method:ELECTRON MICROSCOPY (3.28 Å)
Cite:A role for the Saccharomyces cerevisiae ABCF protein New1 in translation termination/recycling.
Nucleic Acids Res., 47, 2019
5G52
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BU of 5g52 by Molmil
Crystallographic structure of full particle of Deformed Wing Virus
Descriptor: URIDINE-5'-MONOPHOSPHATE, VP1, VP2, ...
Authors:Skubnik, K, Novacek, J, Fuzik, T, Pridal, A, Paxton, R, Plevka, P.
Deposit date:2016-05-18
Release date:2017-03-22
Last modified:2017-03-29
Method:X-RAY DIFFRACTION (3.802 Å)
Cite:Structure of deformed wing virus, a major honey bee pathogen.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
7YYM
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BU of 7yym by Molmil
Mammalian Dicer in the "pre-dicing state" with pre-miR-15a substrate
Descriptor: 59-nt precursor of miR-15a, Endoribonuclease Dicer
Authors:Zanova, M, Zapletal, D, Kubicek, K, Stefl, R, Pinkas, M, Novacek, J.
Deposit date:2022-02-18
Release date:2022-11-16
Method:ELECTRON MICROSCOPY (4.19 Å)
Cite:Structural and functional basis of mammalian microRNA biogenesis by Dicer.
Mol.Cell, 82, 2022
7ZPK
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BU of 7zpk by Molmil
Mammalian Dicer in the "pre-dicing state" with pre-miR-15a substrate and TARBP2 subunit
Descriptor: 59-nt precursor of miR-15a, Endoribonuclease Dicer, RISC-loading complex subunit TARBP2
Authors:Zanova, M, Zapletal, D, Kubicek, K, Stefl, R, Pinkas, M, Novacek, J.
Deposit date:2022-04-27
Release date:2022-11-16
Method:ELECTRON MICROSCOPY (3.81 Å)
Cite:Structural and functional basis of mammalian microRNA biogenesis by Dicer.
Mol.Cell, 82, 2022
7YZ4
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BU of 7yz4 by Molmil
Mouse endoribonuclease Dicer (composite structure)
Descriptor: Endoribonuclease Dicer
Authors:Zanova, M, Zapletal, D, Kubicek, K, Stefl, R, Pinkas, M, Novacek, J.
Deposit date:2022-02-18
Release date:2022-11-16
Method:ELECTRON MICROSCOPY (3.84 Å)
Cite:Structural and functional basis of mammalian microRNA biogenesis by Dicer.
Mol.Cell, 82, 2022
7ZPI
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BU of 7zpi by Molmil
Mammalian Dicer in the "dicing state" with pre-miR-15a substrate
Descriptor: 59-nt precursor of miR-15a, Endoribonuclease Dicer
Authors:Zanova, M, Zapletal, D, Kubicek, K, Stefl, R, Pinkas, M, Novacek, J.
Deposit date:2022-04-27
Release date:2022-11-16
Method:ELECTRON MICROSCOPY (5.91 Å)
Cite:Structural and functional basis of mammalian microRNA biogenesis by Dicer.
Mol.Cell, 82, 2022
7YYN
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BU of 7yyn by Molmil
Mammalian Dicer in the dicing state with pre-miR-15a substrate
Descriptor: 59-nt precursor of miR-15a, Isoform 2 of Endoribonuclease Dicer
Authors:Zanova, M, Zapletal, D, Kubicek, K, Stefl, R, Pinkas, M, Novacek, J.
Deposit date:2022-02-18
Release date:2022-11-16
Method:ELECTRON MICROSCOPY (6.21 Å)
Cite:Structural and functional basis of mammalian microRNA biogenesis by Dicer.
Mol.Cell, 82, 2022
7ZPJ
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BU of 7zpj by Molmil
Mammalian Dicer in the "pre-dicing state" with pre-miR-15a substrate and TARBP2 subunit
Descriptor: 59-nt precursor of miR-15a, Endoribonuclease Dicer, RISC-loading complex subunit TARBP2 isoform 1
Authors:Zanova, M, Zapletal, D, Kubicek, K, Stefl, R, Pinkas, M, Novacek, J.
Deposit date:2022-04-27
Release date:2022-12-28
Method:ELECTRON MICROSCOPY (3.81 Å)
Cite:Structural and functional basis of mammalian microRNA biogenesis by Dicer.
Mol.Cell, 82, 2022
2M4K
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BU of 2m4k by Molmil
Solution structure of the delta subunit of RNA polymerase from Bacillus subtilis
Descriptor: DNA-directed RNA polymerase subunit delta
Authors:Papouskova, V, Novacek, J, Kaderavek, P, Zidek, L, Rabatinova, A, Sanderova, H, Krasny, L, Sklenar, V.
Deposit date:2013-02-07
Release date:2013-10-09
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural Study of the Partially Disordered Full-Length delta Subunit of RNA Polymerase from Bacillus subtilis.
Chembiochem, 14, 2013
7Z49
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BU of 7z49 by Molmil
The capsid of bacteriophage SU10.
Descriptor: Major head protein
Authors:Siborova, M, Fuzik, T, Prochazkova, M, Novacek, J, Plevka, P.
Deposit date:2022-03-03
Release date:2022-10-05
Last modified:2023-04-19
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Tail proteins of phage SU10 reorganize into the nozzle for genome delivery.
Nat Commun, 13, 2022
7NWW
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BU of 7nww by Molmil
CspA-27 cotranslational folding intermediate 1
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Agirrezabala, X, Samatova, E, Macher, M, Liutkute, M, Gil-Carton, D, Novacek, J, Valle, M, Rodnina, M.V.
Deposit date:2021-03-17
Release date:2022-01-19
Last modified:2022-03-02
Method:ELECTRON MICROSCOPY (3.05 Å)
Cite:A switch from alpha-helical to beta-strand conformation during co-translational protein folding.
Embo J., 41, 2022
7Z4B
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BU of 7z4b by Molmil
Bacteriophage SU10 virion (C1)
Descriptor: Adaptor, Major head protein, Portal protein, ...
Authors:Siborova, M, Fuzik, T, Prochazkova, M, Novacek, J, Plevka, P.
Deposit date:2022-03-03
Release date:2022-12-28
Method:ELECTRON MICROSCOPY (7.4 Å)
Cite:Tail proteins of phage SU10 reorganize into the nozzle for genome delivery.
Nat Commun, 13, 2022
7OII
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BU of 7oii by Molmil
CspA-70 cotranslational folding intermediate 2
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Agirrezabala, X, Samatova, E, Macher, M, Liutkute, M, Gil-Carton, D, Novacek, J, Valle, M, Rodnina, M.V.
Deposit date:2021-05-11
Release date:2022-01-19
Last modified:2023-03-01
Method:ELECTRON MICROSCOPY (3 Å)
Cite:A switch from alpha-helical to beta-strand conformation during co-translational protein folding.
Embo J., 41, 2022
7OT5
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BU of 7ot5 by Molmil
CspA-70 cotranslational folding intermediate 1
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Agirrezabala, X, Samatova, E, Macher, M, Liutkute, M, Gil-Carton, D, Novacek, J, Valle, M, Rodnina, M.V.
Deposit date:2021-06-09
Release date:2022-01-19
Last modified:2022-02-23
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:A switch from alpha-helical to beta-strand conformation during co-translational protein folding.
Embo J., 41, 2022
7OIG
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BU of 7oig by Molmil
CspA-27 cotranslational folding intermediate 3
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Agirrezabala, X, Samatova, E, Macher, M, Liutkute, M, Gil-Carton, D, Novacek, J, Valle, M, Rodnina, M.V.
Deposit date:2021-05-11
Release date:2022-01-19
Last modified:2023-03-01
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:A switch from alpha-helical to beta-strand conformation during co-translational protein folding.
Embo J., 41, 2022
7OIF
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BU of 7oif by Molmil
CspA-27 cotranslational folding intermediate 2
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Agirrezabala, X, Samatova, E, Macher, M, Liutkute, M, Gil-Carton, D, Novacek, J, Valle, M, Rodnina, M.V.
Deposit date:2021-05-11
Release date:2022-01-19
Last modified:2023-03-01
Method:ELECTRON MICROSCOPY (3 Å)
Cite:A switch from alpha-helical to beta-strand conformation during co-translational protein folding.
Embo J., 41, 2022
8OOH
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BU of 8ooh by Molmil
Cryo-EM map of the focused refinement of the subfamily III haloalkane dehalogenase from Haloferax mediterranei dimer forming hexameric assembly.
Descriptor: Alpha/beta fold hydrolase
Authors:Polak, M, Novacek, J, Chmelova, K, Marek, M.
Deposit date:2023-04-05
Release date:2023-10-11
Method:ELECTRON MICROSCOPY (7 Å)
Cite:Multimeric structure of a subfamily III haloalkane dehalogenase-like enzyme solved by combination of cryo-EM and x-ray crystallography.
Protein Sci., 32, 2023
5G51
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BU of 5g51 by Molmil
High resolution structure of the part of VP3 protein of Deformed Wing Virus forming P-domain
Descriptor: DWV-VP3-P-DOMAIN
Authors:Skubnik, K, Novacek, J, Fuzik, T, Pridal, A, Paxton, R, Plevka, P.
Deposit date:2016-05-18
Release date:2017-03-22
Last modified:2017-03-29
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structure of deformed wing virus, a major honey bee pathogen.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017

 

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