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2Z6P
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BU of 2z6p by Molmil
Crystal Structure of the Ufc1, Ufm1 conjugating enzyme 1
Descriptor: Ufm1-conjugating enzyme 1
Authors:Mizushima , T, Tatsumi, K, Ozaki, Y, Kawakami, T, Suzuki, A, Ogasahara, K, Komatsu, M, Kominami, E, Tanaka, K, Yamane, T.
Deposit date:2007-08-06
Release date:2007-09-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of Ufc1, the Ufm1-conjugating enzyme
Biochem.Biophys.Res.Commun., 362, 2007
2Z6O
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BU of 2z6o by Molmil
Crystal Structure of the Ufc1, Ufm1 conjugating enzyme 1
Descriptor: MAGNESIUM ION, Ufm1-conjugating enzyme 1
Authors:Mizushima , T, Tatsumi, K, Ozaki, Y, Kawakami, T, Suzuki, A, Ogasahara, K, Komatsu, M, Kominami, E, Tanaka, K, Yamane, T.
Deposit date:2007-08-06
Release date:2007-09-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of Ufc1, the Ufm1-conjugating enzyme
Biochem.Biophys.Res.Commun., 362, 2007
1UMI
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BU of 1umi by Molmil
Structural basis of sugar-recognizing ubiquitin ligase
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose, F-box only protein 2
Authors:Mizushima, T, Hirao, T, Yoshida, Y, Lee, S.J, Chiba, T, Iwai, K, Yamaguchi, Y, Kato, K, Tsukihara, T, Tanaka, K.
Deposit date:2003-10-01
Release date:2004-04-06
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis of sugar-recognizing ubiquitin ligase.
Nat.Struct.Mol.Biol., 11, 2004
1UMH
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BU of 1umh by Molmil
Structural basis of sugar-recognizing ubiquitin ligase
Descriptor: F-box only protein 2, NICKEL (II) ION
Authors:Mizushima, T, Hirao, T, Yoshida, Y, Lee, S.J, Chiba, T, Iwai, K, Yamaguchi, Y, Kato, K, Tsukihara, T, Tanaka, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-10-01
Release date:2004-04-06
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of sugar-recognizing ubiquitin ligase
NAT.STRUCT.MOL.BIOL., 11, 2004
1WZV
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BU of 1wzv by Molmil
Crystal Structure of UbcH8
Descriptor: Ubiquitin-conjugating enzyme E2 L6
Authors:Mizushima, T, Suzuki, M, Teshima, N, Yamane, T, Murata, S, Tanaka, K.
Deposit date:2005-03-10
Release date:2005-03-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of UbcH8
To be Published
1WZW
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BU of 1wzw by Molmil
Crystal Structure of UbcH8
Descriptor: Ubiquitin-conjugating enzyme E2 L6
Authors:Mizushima, T, Suzuki, M, Teshima, N, Yamane, T, Murata, S, Tanaka, K.
Deposit date:2005-03-10
Release date:2005-03-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structure of UbcH8
To be Published
2E33
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BU of 2e33 by Molmil
Structural basis for selection of glycosylated substrate by SCFFbs1 ubiquitin ligase
Descriptor: F-box only protein 2, Ribonuclease pancreatic, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Mizushima, T, Yoshida, Y, Kumanomidou, T, Hasegawa, Y, Yamane, T, Tanaka, K.
Deposit date:2006-11-20
Release date:2007-03-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis for the selection of glycosylated substrates by SCFFbs1 ubiquitin ligase
Proc.Natl.Acad.Sci.Usa, 104, 2007
2E31
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BU of 2e31 by Molmil
Structural basis for selection of glycosylated substrate by SCFFbs1 ubiquitin ligase
Descriptor: F-box only protein 2, S-phase kinase-associated protein 1A
Authors:Mizushima, T, Yoshida, Y, Kumanomidou, T, Hasegawa, Y, Yamane, T, Tanaka, K.
Deposit date:2006-11-20
Release date:2007-03-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for the selection of glycosylated substrates by SCFFbs1 ubiquitin ligase
Proc.Natl.Acad.Sci.Usa, 104, 2007
2E32
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BU of 2e32 by Molmil
Structural basis for selection of glycosylated substrate by SCFFbs1 ubiquitin ligase
Descriptor: F-box only protein 2, S-phase kinase-associated protein 1A
Authors:Mizushima, T, Yoshida, Y, Kumanomidou, T, Hasegawa, Y, Yamane, T, Tanaka, K.
Deposit date:2006-11-20
Release date:2007-03-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.52 Å)
Cite:Structural basis for the selection of glycosylated substrates by SCFFbs1 ubiquitin ligase
Proc.Natl.Acad.Sci.Usa, 104, 2007
3AY4
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BU of 3ay4 by Molmil
Crystal structure of nonfucosylated Fc complexed with bis-glycosylated soluble form of Fc gamma receptor IIIa
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Ig gamma-1 chain C region, Low affinity immunoglobulin gamma Fc region receptor III-A, ...
Authors:Mizushima, T, Takemoto, E, Yagi, H, Shibata-Koyama, M, Isoda, Y, Iida, S, Satoh, M, Kato, K.
Deposit date:2011-04-28
Release date:2011-08-03
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for improved efficacy of therapeutic antibodies on defucosylation of their Fc glycans
Genes Cells, 16, 2011
3RKS
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BU of 3rks by Molmil
Crystal Structure of the Manihot esculenta Hydroxynitrile Lyase (MeHNL) K176P mutant
Descriptor: GLYCEROL, Hydroxynitrilase
Authors:Cielo, C.B.C, Yamane, T, Asano, Y, Dadashipour, M, Suzuki, A, Mizushima, T, Komeda, H.
Deposit date:2011-04-18
Release date:2012-06-20
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystallographic Studies of Manihot esculenta hydroxynitrile lyase Lysine-to-Proline mutants
To be Published
1DDZ
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BU of 1ddz by Molmil
X-RAY STRUCTURE OF A BETA-CARBONIC ANHYDRASE FROM THE RED ALGA, PORPHYRIDIUM PURPUREUM R-1
Descriptor: CARBONIC ANHYDRASE, ZINC ION
Authors:Mitsuhashi, S, Mizushima, T, Yamashita, E, Miyachi, S, Tsukihara, T.
Deposit date:1999-11-12
Release date:2000-03-08
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:X-ray structure of beta-carbonic anhydrase from the red alga, Porphyridium purpureum, reveals a novel catalytic site for CO(2) hydration.
J.Biol.Chem., 275, 2000
3HJE
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BU of 3hje by Molmil
Crystal structure of sulfolobus tokodaii hypothetical maltooligosyl trehalose synthase
Descriptor: 704aa long hypothetical glycosyltransferase, GLYCEROL
Authors:Cielo, C.B.C, Okazaki, S, Suzuki, A, Mizushima, T, Masui, R, Kuramitsu, S, Yamane, T.
Deposit date:2009-05-21
Release date:2010-04-14
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of ST0929, a putative glycosyl transferase from Sulfolobus tokodaii
Acta Crystallogr.,Sect.F, 66, 2010
4DBG
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BU of 4dbg by Molmil
Crystal structure of HOIL-1L-UBL complexed with a HOIP-UBA derivative
Descriptor: RING finger protein 31, RanBP-type and C3HC4-type zinc finger-containing protein 1
Authors:Yagi, H, Hiromoto, T, Mizushima, T, Kurimoto, E, Kato, K.
Deposit date:2012-01-15
Release date:2012-04-04
Last modified:2012-05-16
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:A non-canonical UBA-UBL interaction forms the linear-ubiquitin-chain assembly complex
Embo Rep., 13, 2012
5KH1
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BU of 5kh1 by Molmil
Shigella flexneri Effector IpaH1880
Descriptor: Invasion plasmid antigen
Authors:Nishide, A, Mizushima, T.
Deposit date:2016-06-14
Release date:2017-07-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Shigella flexneri Effector IpaH1880
To Be Published
2RJ2
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BU of 2rj2 by Molmil
Crystal Structure of the Sugar Recognizing SCF Ubiquitin Ligase at 1.7 Resolution
Descriptor: CHLORIDE ION, F-box only protein 2, NICKEL (II) ION
Authors:Vaijayanthimala, S, Velmurugan, D, Mizushima, T, Yamane, T, Yoshida, Y, Tanaka, K.
Deposit date:2007-10-14
Release date:2008-10-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of the Sugar Recognizing SCF Ubiquitin Ligase at 1.7 Resolution
To be Published
6K5V
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BU of 6k5v by Molmil
Structure of CSY4 Apo-form
Descriptor: CHLORIDE ION, Citrate synthase 4, mitochondrial
Authors:Nishio, K, Mizushima, T.
Deposit date:2019-05-31
Release date:2020-03-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:Structural and biochemical characterization of mitochondrial citrate synthase 4 from Arabidopsis thaliana.
Acta Crystallogr.,Sect.F, 76, 2020
8GR8
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BU of 8gr8 by Molmil
Crystal structure of peroxisomal citrate synthase (Cit2) from Saccharomycescerevisiae
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CHLORIDE ION, Citrate synthase, ...
Authors:Nishio, K, Nakatsukasa, K, Kamura, T, Mizushima, T.
Deposit date:2022-09-01
Release date:2023-04-26
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Defective import of mitochondrial metabolic enzyme elicits ectopic metabolic stress.
Sci Adv, 9, 2023
8GQZ
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BU of 8gqz by Molmil
Crystal structure of mitochondrial citrate synthase (Cit1) from Saccharomyces cerevisiae
Descriptor: ACETATE ION, CHLORIDE ION, Citrate synthase, ...
Authors:Nishio, K, Nakatsukasa, K, Kamura, T, Mizushima, T.
Deposit date:2022-08-31
Release date:2023-04-26
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Defective import of mitochondrial metabolic enzyme elicits ectopic metabolic stress.
Sci Adv, 9, 2023
8GR9
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BU of 8gr9 by Molmil
Crystal structure of peroxisomal citrate synthase (Cit2) from Saccharomyces cerevisiae in complex with oxaloacetate and coenzyme-A
Descriptor: CHLORIDE ION, COENZYME A, Citrate synthase, ...
Authors:Nishio, K, Nakatsukasa, K, Kamura, T, Mizushima, T.
Deposit date:2022-09-01
Release date:2023-04-26
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Defective import of mitochondrial metabolic enzyme elicits ectopic metabolic stress.
Sci Adv, 9, 2023
8GRE
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BU of 8gre by Molmil
F-box protein in complex with skp1(FL) and substrate
Descriptor: Citrate synthase, E3 ubiquitin ligase complex SCF subunit, F-box protein UCC1, ...
Authors:Nishio, K, Nakatsukasa, K, Kamura, T, Mizushima, T.
Deposit date:2022-09-01
Release date:2023-04-26
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Defective import of mitochondrial metabolic enzyme elicits ectopic metabolic stress.
Sci Adv, 9, 2023
8GRF
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BU of 8grf by Molmil
Crystal structure of F-box protein in the ternary complex with adaptor protein Skp1(DL) and its substrate
Descriptor: 1,2-ETHANEDIOL, Citrate synthase, E3 ubiquitin ligase complex SCF subunit, ...
Authors:Nishio, K, Nakatsukasa, K, Kamura, T, Mizushima, T.
Deposit date:2022-09-01
Release date:2023-04-26
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Defective import of mitochondrial metabolic enzyme elicits ectopic metabolic stress.
Sci Adv, 9, 2023
4ZY3
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BU of 4zy3 by Molmil
Crystal Structure of Keap1 in Complex with a small chemical compound, K67
Descriptor: FORMIC ACID, Kelch-like ECH-associated protein 1, N,N'-[2-(2-oxopropyl)naphthalene-1,4-diyl]bis(4-ethoxybenzenesulfonamide)
Authors:Fukutomi, T, Iso, T, Suzuki, T, Takagi, K, Mizushima, T, Komatsu, M, Yamamoto, M.
Deposit date:2015-05-21
Release date:2016-05-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:p62/Sqstm1 promotes malignancy of HCV-positive hepatocellular carcinoma through Nrf2-dependent metabolic reprogramming
Nat Commun, 7, 2016
1IRU
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BU of 1iru by Molmil
Crystal Structure of the mammalian 20S proteasome at 2.75 A resolution
Descriptor: 20S proteasome, MAGNESIUM ION
Authors:Unno, M, Mizushima, T, Morimoto, Y, Tomisugi, Y, Tanaka, K, Yasuoka, N, Tsukihara, T.
Deposit date:2001-10-24
Release date:2002-05-22
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:The structure of the mammalian 20S proteasome at 2.75 A resolution.
Structure, 10, 2002
5D94
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BU of 5d94 by Molmil
Crystal structure of LC3-LIR peptide complex
Descriptor: Microtubule-associated proteins 1A/1B light chain 3B, Peptide from FYVE and coiled-coil domain-containing protein 1
Authors:Takagi, K, Mizushima, T, Johansen, T.
Deposit date:2015-08-18
Release date:2015-10-21
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:FYCO1 Contains a C-terminally Extended, LC3A/B-preferring LC3-interacting Region (LIR) Motif Required for Efficient Maturation of Autophagosomes during Basal Autophagy
J.Biol.Chem., 290, 2015

 

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PDB entries from 2024-03-27

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