Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2BRI
DownloadVisualize
BU of 2bri by Molmil
UMP KINASE FROM PYROCOCCUS FURIOSUS COMPLEXED WITH ITS SUBSTRATE ANALOG AMPPNP
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, URIDYLATE KINASE
Authors:Marco-Marin, C, Gil-Ortiz, F, Rubio, V.
Deposit date:2005-05-05
Release date:2005-07-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:The Crystal Structure of Pyrococcus Furiosus Ump Kinase Provides Insight Into Catalysis and Regulation in Microbial Pyrimidine Nucleotide Biosynthesis.
J.Mol.Biol., 352, 2005
2BMU
DownloadVisualize
BU of 2bmu by Molmil
UMP KINASE FROM PYROCOCCUS FURIOSUS COMPLEXED WITH ITS SUBSTRATE UMP AND ITS SUBSTRATE ANALOG AMPPNP
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, URIDINE-5'-MONOPHOSPHATE, ...
Authors:Marco-Marin, C, Gil-Ortiz, F, Rubio, V.
Deposit date:2005-03-16
Release date:2005-07-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:The Crystal Structure of Pyrococcus Furiosus Ump Kinase Provides Insight Into Catalysis and Regulation in Microbial Pyrimidine Nucleotide Biosynthesis.
J.Mol.Biol., 352, 2005
2BRX
DownloadVisualize
BU of 2brx by Molmil
UMP KINASE FROM PYROCOCCUS FURIOSUS WITHOUT LIGANDS
Descriptor: URIDYLATE KINASE
Authors:Marco-Marin, C, Gil-Ortiz, F, Rubio, V.
Deposit date:2005-05-11
Release date:2005-07-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The Crystal Structure of Pyrococcus Furiosus Ump Kinase Provides Insight Into Catalysis and Regulation in Microbial Pyrimidine Nucleotide Biosynthesis.
J.Mol.Biol., 352, 2005
2J5T
DownloadVisualize
BU of 2j5t by Molmil
Glutamate 5-kinase from Escherichia coli complexed with glutamate
Descriptor: CHLORIDE ION, GLUTAMATE 5-KINASE, GLUTAMIC ACID, ...
Authors:Marco-Marin, C, Gil-Ortiz, F, Perez-Arellano, I, Cervera, J, Fita, I, Rubio, V.
Deposit date:2006-09-19
Release date:2007-03-06
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:A Novel Two-Domain Architecture within the Amino Acid Kinase Enzyme Family Revealed by the Crystal Structure of Escherichia Coli Glutamate 5-Kinase.
J.Mol.Biol., 367, 2007
2J5V
DownloadVisualize
BU of 2j5v by Molmil
GLUTAMATE 5-KINASE FROM ESCHERICHIA COLI COMPLEXED WITH GLUTAMYL-5-PHOSPHATE AND PYROGLUTAMIC ACID
Descriptor: GAMMA-GLUTAMYL PHOSPHATE, GLUTAMATE 5-KINASE, MAGNESIUM ION, ...
Authors:Marco-Marin, C, Gil-Ortiz, F, Perez-Arellano, I, Cervera, J, Fita, I, Rubio, V.
Deposit date:2006-09-19
Release date:2007-03-06
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A Novel Two-Domain Architecture within the Amino Acid Kinase Enzyme Family Revealed by the Crystal Structure of Escherichia Coli Glutamate 5-Kinase.
J.Mol.Biol., 367, 2007
2JI5
DownloadVisualize
BU of 2ji5 by Molmil
Structure of UMP kinase from Pyrococcus furiosus complexed with UTP
Descriptor: URIDINE 5'-TRIPHOSPHATE, URIDYLATE KINASE
Authors:Marco-Marin, C, Rubio, V.
Deposit date:2007-02-26
Release date:2007-10-16
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:The Structure of Ump Kinase from Pyrococcus Furiosus Complexed with Utp
To be Published
8P99
DownloadVisualize
BU of 8p99 by Molmil
SARS-CoV-2 S-protein:D614G mutant in 1-up conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S1,Spike glycoprotein
Authors:Adhav, A, Forcada-Nadal, A, Marco-Marin, C, Lopez-Redondo, M.L, Llacer, J.L.
Deposit date:2023-06-05
Release date:2023-09-27
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:C-2 Thiophenyl Tryptophan Trimers Inhibit Cellular Entry of SARS-CoV-2 through Interaction with the Viral Spike (S) Protein.
J.Med.Chem., 66, 2023
8P9Y
DownloadVisualize
BU of 8p9y by Molmil
SARS-CoV-2 S protein S:D614G mutant in 3-down with binding site of an entry inhibitor
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, SODIUM ION, ...
Authors:Adhav, A, Forcada-Nadal, A, Marco-Marin, C, Lopez-Redondo, M.L, Llacer, J.L.
Deposit date:2023-06-06
Release date:2023-09-27
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:C-2 Thiophenyl Tryptophan Trimers Inhibit Cellular Entry of SARS-CoV-2 through Interaction with the Viral Spike (S) Protein.
J.Med.Chem., 66, 2023
7QDG
DownloadVisualize
BU of 7qdg by Molmil
SARS-CoV-2 S protein S:A222V + S:D614G mutant 1-up
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Ginex, T, Marco-Marin, C, Wieczor, M, Mata, C.P, Krieger, J, Lopez-Redondo, M.L, Frances-Gomez, C, Ruiz-Rodriguez, P, Melero, R, Sanchez-Sorzano, C.O, Martinez, M, Gougeard, N, Forcada-Nadal, A, Zamora-Caballero, S, Gozalbo-Rovira, R, Sanz-Frasquet, C, Bravo, J, Rubio, V, Marina, A, Geller, R, Comas, I, Gil, C, Coscolla, M, Orozco, M, LLacer, J.L, Carazo, J.M.
Deposit date:2021-11-27
Release date:2022-05-25
Last modified:2022-08-24
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: The case of the spike A222V mutation.
Plos Pathog., 18, 2022
7QDH
DownloadVisualize
BU of 7qdh by Molmil
SARS-CoV-2 S protein S:D614G mutant 1-up
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein,Fibritin
Authors:Ginex, T, Marco-Marin, C, Wieczor, M, Mata, C.P, Krieger, J, Lopez-Redondo, M.L, Frances-Gomez, C, Ruiz-Rodriguez, P, Melero, R, Sanchez-Sorzano, C.O, Martinez, M, Gougeard, N, Forcada-Nadal, A, Zamora-Caballero, S, Gozalbo-Rovira, R, Sanz-Frasquet, C, Bravo, J, Rubio, V, Marina, A, Geller, R, Comas, I, Gil, C, Coscolla, M, Orozco, M, LLacer, J.L, Carazo, J.M.
Deposit date:2021-11-27
Release date:2022-05-25
Last modified:2022-08-10
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: The case of the spike A222V mutation.
Plos Pathog., 18, 2022
2V5H
DownloadVisualize
BU of 2v5h by Molmil
Controlling the storage of nitrogen as arginine: the complex of PII and acetylglutamate kinase from Synechococcus elongatus PCC 7942
Descriptor: ACETYLGLUTAMATE KINASE, CHLORIDE ION, GLYCEROL, ...
Authors:Llacer, J.L, Marco-Marin, C, Gil-Ortiz, F, Fita, I, Rubio, V.
Deposit date:2007-07-04
Release date:2007-10-16
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:The Crystal Structure of the Complex of Pii and Acetylglutamate Kinase Reveals How Pii Controls the Storage of Nitrogen as Arginine.
Proc.Natl.Acad.Sci.USA, 104, 2007
2W21
DownloadVisualize
BU of 2w21 by Molmil
Crystal structure of the aminoacid kinase domain of the glutamate 5 kinase of Escherichia coli.
Descriptor: GLUTAMATE 5-KINASE, SULFATE ION
Authors:Perez-Arellano, I, Gil-Ortiz, F, Marco-Marin, C, Cervera, J, Rubio, V.
Deposit date:2008-10-21
Release date:2009-11-17
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:The Structure of Glutamate 5 Kinase of Escherichia Coli without Substrates
To be Published
2JJ4
DownloadVisualize
BU of 2jj4 by Molmil
The complex of PII and acetylglutamate kinase from Synechococcus elongatus PCC7942
Descriptor: ACETYLGLUTAMATE KINASE, N-ACETYL-L-GLUTAMATE, NITROGEN REGULATORY PROTEIN P-II
Authors:Llacer, J.L, Marco-Marin, C, Gil-Ortiz, F, Fita, I, Rubio, V.
Deposit date:2007-07-04
Release date:2007-10-16
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3.46 Å)
Cite:The Crystal Structure of the Complex of Pii and Acetylglutamate Kinase Reveals How Pii Controls the Storage of Nitrogen as Arginine
Proc.Natl.Acad.Sci.USA, 104, 2007
6T76
DownloadVisualize
BU of 6t76 by Molmil
PII-like protein CutA from Nostoc sp. PCC 7120 in apo form
Descriptor: Periplasmic divalent cation tolerance protein, SULFATE ION
Authors:Selim, K.A, Albrecht, R, Forchhammer, K, Hartmann, M.D.
Deposit date:2019-10-21
Release date:2020-07-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Functional and structural characterization of PII-like protein CutA does not support involvement in heavy metal tolerance and hints at a small-molecule carrying/signaling role.
Febs J., 288, 2021
6T7E
DownloadVisualize
BU of 6t7e by Molmil
PII-like protein CutA from Nostoc sp. PCC7120 in complex with MES
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Periplasmic divalent cation tolerance protein
Authors:Selim, K.A, Albrecht, R, Forchhammer, K, Hartmann, M.D.
Deposit date:2019-10-21
Release date:2020-07-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Functional and structural characterization of PII-like protein CutA does not support involvement in heavy metal tolerance and hints at a small-molecule carrying/signaling role.
Febs J., 288, 2021
6GDW
DownloadVisualize
BU of 6gdw by Molmil
Structure of CutA from Synechococcus elongatus PCC7942 complexed with 2 molecules of Bis-Tris
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Periplasmic divalent cation tolerance protein
Authors:Tremino, L, Rubio, V.
Deposit date:2018-04-24
Release date:2019-05-08
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Functional and structural characterization of PII-like protein CutA does not support involvement in heavy metal tolerance and hints at a small-molecule carrying/signaling role.
Febs J., 2020
6GDX
DownloadVisualize
BU of 6gdx by Molmil
Structure of CutA from Synechococcus elongatus PCC7942 complexed with 3 molecules of Bis-Tris
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Periplasmic divalent cation tolerance protein
Authors:Tremino, L, Rubio, V.
Deposit date:2018-04-24
Release date:2019-05-08
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:Functional and structural characterization of PII-like protein CutA does not support involvement in heavy metal tolerance and hints at a small-molecule carrying/signaling role.
Febs J., 2020
6GDV
DownloadVisualize
BU of 6gdv by Molmil
Structure of CutA from Synechococcus elongatus PCC7942 complexed with Bis-Tris molecule
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Periplasmic divalent cation tolerance protein
Authors:Tremino, L, Rubio, V.
Deposit date:2018-04-24
Release date:2019-05-08
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2 Å)
Cite:Functional and structural characterization of PII-like protein CutA does not support involvement in heavy metal tolerance and hints at a small-molecule carrying/signaling role.
Febs J., 2020
6GDU
DownloadVisualize
BU of 6gdu by Molmil
Structure of CutA from Synechococcus elongatus PCC7942
Descriptor: Periplasmic divalent cation tolerance protein
Authors:Tremino, L, Rubio, V.
Deposit date:2018-04-24
Release date:2019-05-08
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Functional and structural characterization of PII-like protein CutA does not support involvement in heavy metal tolerance and hints at a small-molecule carrying/signaling role.
Febs J., 2020

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon