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2PHE
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BU of 2phe by Molmil
Model for VP16 binding to PC4
Descriptor: Alpha trans-inducing protein, TRANSCRIPTIONAL COACTIVATOR PC4
Authors:Jonker, H.R.A, Wechselberger, R.W, Boelens, R, Folkers, G.E, Kaptein, R.
Deposit date:2007-04-11
Release date:2007-04-24
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Structural Properties of the Promiscuous VP16 Activation Domain
Biochemistry, 44, 2005
2PHG
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BU of 2phg by Molmil
Model for VP16 binding to TFIIB
Descriptor: Alpha trans-inducing protein, Transcription initiation factor IIB
Authors:Jonker, H.R.A, Wechselberger, R.W, Boelens, R, Folkers, G.E, Kaptein, R.
Deposit date:2007-04-11
Release date:2007-04-24
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Structural Properties of the Promiscuous VP16 Activation Domain
Biochemistry, 44, 2005
2JQ7
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BU of 2jq7 by Molmil
Model for thiostrepton binding to the ribosomal L11-RNA
Descriptor: 50S RIBOSOMAL PROTEIN L11, RIBOSOMAL RNA, THIOSTREPTON
Authors:Jonker, H.R.A, Ilin, S, Grimm, S.K, Woehnert, J, Schwalbe, H.
Deposit date:2007-05-30
Release date:2007-07-03
Last modified:2021-08-18
Method:SOLUTION NMR
Cite:L11 Domain Rearrangement Upon Binding to RNA and Thiostrepton Studied by NMR Spectroscopy
Nucleic Acids Res., 35, 2007
2K3F
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BU of 2k3f by Molmil
Ribosomal protein L11 from Thermotoga maritima
Descriptor: 50S ribosomal protein L11
Authors:Jonker, H.R.A, Ilin, S, Schwalbe, H, Woehnert, J.
Deposit date:2008-05-06
Release date:2008-06-17
Last modified:2013-09-04
Method:SOLUTION NMR
Cite:Domain reorientation and induced fit upon RNA binding: solution structure and dynamics of ribosomal protein L11 from Thermotoga maritima
ChemBioChem, 6, 2005
5N5C
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BU of 5n5c by Molmil
NMR solution structure of the TSL2 RNA hairpin
Descriptor: RNA (19-MER)
Authors:Garcia-Lopez, A, Wacker, A, Tessaro, F, Jonker, H.R.A, Richter, C, Comte, A, Berntenis, N, Schmucki, R, Hatje, K, Sciarra, D, Konieczny, P, Fournet, G, Faustino, I, Orozco, M, Artero, R, Goekjian, P, Metzger, F, Ebeling, M, Joseph, B, Schwalbe, H, Scapozza, L.
Deposit date:2017-02-13
Release date:2018-03-14
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Targeting RNA structure in SMN2 reverses spinal muscular atrophy molecular phenotypes.
Nat Commun, 9, 2018
5GQS
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BU of 5gqs by Molmil
NMR based solution structure of PTS system, galactitol-specific IIB component from methicillin resistant Staphylococcus aureus
Descriptor: PTS galactitol transporter subunit IIB
Authors:Wahab, A, Schwalbe, H, Shahid, M.F, Richter, C, Jonker, H.R.A.
Deposit date:2016-08-08
Release date:2016-09-14
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:NMR based solution structure of PTS system, galactitol-specific IIB component from methicillin resistant Staphylococcus aureus
To Be Published
2W0G
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BU of 2w0g by Molmil
HSP90 CO-CHAPERONE CDC37
Descriptor: HSP90 CO-CHAPERONE CDC37
Authors:Sreeramulu, S, Jonker, H.R.A, Schwalbe, H, Lancaster, C.R.D.
Deposit date:2008-08-15
Release date:2008-12-09
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:The Human Cdc37.Hsp90 Complex Studied by Heteronuclear NMR Spectroscopy.
J.Biol.Chem., 284, 2009
6Q2Z
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BU of 6q2z by Molmil
NMR solution structure of the HVO_2922 protein from Haloferax volcanii
Descriptor: UPF0339 family protein
Authors:Kubatova, N, Jonker, H.R.A, Saxena, K, Richter, C, Marchfelder, A, Schwalbe, H.
Deposit date:2018-12-03
Release date:2019-06-12
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution Structure and Dynamics of the Small Protein HVO_2922 from Haloferax volcanii.
Chembiochem, 21, 2020
7A05
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BU of 7a05 by Molmil
NMR structure of D3-D4 domains of Vibrio vulnificus ribosomal protein S1
Descriptor: 30S ribosomal protein S1
Authors:Qureshi, N.S, Matzel, T, Cetiner, E.C, Schnieders, S, Jonker, H.R.A, Schwalbe, H, Fuertig, B.
Deposit date:2020-08-06
Release date:2021-06-23
Last modified:2024-01-17
Method:SOLUTION NMR
Cite:NMR structure of the Vibrio vulnificus ribosomal protein S1 domains D3 and D4 provides insights into molecular recognition of single-stranded RNAs.
Nucleic Acids Res., 49, 2021
8CLR
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BU of 8clr by Molmil
Integrated NMR/MD structure determination of a dynamic and thermodynamically stable CUUG RNA tetraloop
Descriptor: RNA hairpin with CUUG tetraloop
Authors:Oxenfarth, A, Kuemmerer, F, Bottaro, S, Schnieders, R, Pinter, G, Jonker, H.R.A, Fuertig, B, Richter, C, Blackledge, M, Lindorff-Larsen, K, Schwalbe, H.
Deposit date:2023-02-17
Release date:2023-07-19
Last modified:2023-08-09
Method:SOLUTION NMR
Cite:Integrated NMR/Molecular Dynamics Determination of the Ensemble Conformation of a Thermodynamically Stable CUUG RNA Tetraloop.
J.Am.Chem.Soc., 145, 2023
6F2X
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BU of 6f2x by Molmil
Structural characterization of the Mycobacterium tuberculosis Protein Tyrosine Kinase A (PtkA)
Descriptor: Protein Tyrosine Kinase A
Authors:Niesteruk, A, Jonker, H.R.A, Sreeramulu, S, Richter, C, Hutchison, M, Linhard, V, Schwalbe, H.
Deposit date:2017-11-27
Release date:2018-07-04
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:The domain architecture of PtkA, the first tyrosine kinase fromMycobacterium tuberculosis, differs from the conventional kinase architecture.
J. Biol. Chem., 293, 2018
6F27
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BU of 6f27 by Molmil
NMR solution structure of non-bound [des-Arg10]-kallidin (DAKD)
Descriptor: DAKD
Authors:Richter, C, Jonker, H.R.A, Schwalbe, H, Joedicke, L, Mao, J, Kuenze, G, Reinhart, C, Kalavacherla, T, Meiler, J, Preu, J, Michel, H, Glaubitz, C.
Deposit date:2017-11-23
Release date:2018-01-10
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:The molecular basis of subtype selectivity of human kinin G-protein-coupled receptors.
Nat. Chem. Biol., 14, 2018
5MVB
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BU of 5mvb by Molmil
Solution structure of a human G-Quadruplex hybrid-2 form in complex with a Gold-ligand.
Descriptor: DNA (26-MER), POTASSIUM ION, bis(m2-Oxo)-bis(2-methyl-2,2'-bipyridine)-di-gold(iii)
Authors:Wirmer-Bartoschek, J, Jonker, H.R.A, Bendel, L.E, Gruen, T, Bazzicalupi, C, Messori, L, Gratteri, P, Schwalbe, H.
Deposit date:2017-01-16
Release date:2017-05-31
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution NMR Structure of a Ligand/Hybrid-2-G-Quadruplex Complex Reveals Rearrangements that Affect Ligand Binding.
Angew. Chem. Int. Ed. Engl., 56, 2017
2KOC
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BU of 2koc by Molmil
NMR solution structure of a 14-mer hairpin RNA with cUUCGg tetraloop
Descriptor: RNA (5'-R(P*GP*GP*CP*AP*CP*UP*UP*CP*GP*GP*UP*GP*CP*C)-3')
Authors:Nozinovic, S, Fuertig, B, Jonker, H.R.A, Richter, C, Schwalbe, H.
Deposit date:2009-09-17
Release date:2009-12-01
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:High-resolution NMR structure of an RNA model system: the 14-mer cUUCGg tetraloop hairpin RNA
Nucleic Acids Res., 2009
2KER
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BU of 2ker by Molmil
alpha-amylase inhibitor Parvulustat (Z-2685) from Streptomyces parvulus
Descriptor: Alpha-amylase inhibitor Z-2685
Authors:Rehm, S, Han, S, Hassani, I, Sokocevic, A, Jonker, H.R.A, Engels, J.W, Schwalbe, H.
Deposit date:2009-02-02
Release date:2009-02-17
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:The high resolution NMR structure of parvulustat (Z-2685) from Streptomyces parvulus FH-1641: comparison with tendamistat from Streptomyces tendae 4158
Chembiochem, 10, 2009
2K5B
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BU of 2k5b by Molmil
Human CDC37-HSP90 docking model based on NMR
Descriptor: Heat shock protein HSP 90-alpha, Hsp90 co-chaperone Cdc37
Authors:Sreeramulu, S, Jonker, H.R.A, Lancaster, C.R, Richter, C, Langer, T, Schwalbe, H.
Deposit date:2008-06-26
Release date:2008-12-09
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:The human Cdc37.Hsp90 complex studied by heteronuclear NMR spectroscopy
J.Biol.Chem., 284, 2009
2KMJ
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BU of 2kmj by Molmil
High resolution NMR solution structure of a complex of HIV-2 TAR RNA and a synthetic tripeptide in a 1:2 stoichiometry
Descriptor: Pyrimidinylpeptide, RNA (28-MER)
Authors:Ferner, J, Suhartono, M, Breitung, S, Jonker, H.R.A, Hennig, M, Woehnert, J, Goebel, M, Schwalbe, H.
Deposit date:2009-07-30
Release date:2009-08-18
Last modified:2023-11-15
Method:SOLUTION NMR
Cite:Structures of HIV TAR RNA-ligand complexes reveal higher binding stoichiometries.
Chembiochem, 10, 2009
2L2X
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BU of 2l2x by Molmil
Thiostrepton, oxidized at CA-CB bond of residue 9
Descriptor: Thiostrepton
Authors:Jonker, H.R.A, Baumann, S, Wolf, A, Schoof, S, Hiller, F, Schulte, K.W, Kirschner, K.N, Schwalbe, H, Arndt, H.-D.
Deposit date:2010-08-27
Release date:2011-02-02
Last modified:2013-06-26
Method:SOLUTION NMR
Cite:NMR structures of thiostrepton derivatives for characterization of the ribosomal binding site.
Angew.Chem.Int.Ed.Engl., 50, 2011
2L2Z
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BU of 2l2z by Molmil
Thiostrepton, reduced at N-CA bond of residue 14
Descriptor: Thiostrepton
Authors:Jonker, H.R.A, Baumann, S, Wolf, A, Schoof, S, Hiller, F, Schulte, K.W, Kirschner, K.N, Schwalbe, H, Arndt, H.-D.
Deposit date:2010-08-27
Release date:2011-02-02
Last modified:2013-06-26
Method:SOLUTION NMR
Cite:NMR structures of thiostrepton derivatives for characterization of the ribosomal binding site.
Angew.Chem.Int.Ed.Engl., 50, 2011
2L2W
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BU of 2l2w by Molmil
Thiostrepton
Descriptor: Thiostrepton
Authors:Jonker, H.R.A, Baumann, S, Wolf, A, Schoof, S, Hiller, F, Schulte, K.W, Kirschner, K.N, Schwalbe, H, Arndt, H.-D.
Deposit date:2010-08-27
Release date:2011-02-02
Last modified:2013-05-08
Method:SOLUTION NMR
Cite:NMR structures of thiostrepton derivatives for characterization of the ribosomal binding site.
Angew.Chem.Int.Ed.Engl., 50, 2011
2L2Y
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BU of 2l2y by Molmil
Thiostrepton, epimer form of residue 9
Descriptor: Thiostrepton
Authors:Jonker, H.R.A, Baumann, S, Wolf, A, Schoof, S, Hiller, F, Schulte, K.W, Kirschner, K.N, Schwalbe, H, Arndt, H.-D.
Deposit date:2010-08-27
Release date:2011-02-02
Last modified:2013-06-26
Method:SOLUTION NMR
Cite:NMR structures of thiostrepton derivatives for characterization of the ribosomal binding site.
Angew.Chem.Int.Ed.Engl., 50, 2011
3POK
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BU of 3pok by Molmil
Interleukin-1-beta LBT L3 Mutant
Descriptor: Interleukin-1 beta
Authors:Barthelmes, K, Reynolds, A.M, Peisach, E, Jonker, H.R.A, DeNunzio, N.J, Allen, K.N, Imperiali, B, Schwalbe, H.
Deposit date:2010-11-22
Release date:2011-01-19
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Engineering encodable lanthanide-binding tags into loop regions of proteins.
J.Am.Chem.Soc., 133, 2011
8CQ1
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BU of 8cq1 by Molmil
Stem-Loop 4 of the 5'-UTR of the SARS-CoV2 genomic RNA
Descriptor: 5_SL4
Authors:Duchardt-Ferner, E, Voegele, J.
Deposit date:2023-03-03
Release date:2023-09-20
Last modified:2023-11-22
Method:SOLUTION NMR
Cite:High-resolution structure of stem-loop 4 from the 5'-UTR of SARS-CoV-2 solved by solution state NMR.
Nucleic Acids Res., 51, 2023
2LUO
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BU of 2luo by Molmil
NMR solution structure of apo-MptpA
Descriptor: LOW MOLECULAR WEIGHT PROTEIN-TYROSINE-PHOSPHATASE A
Authors:Stehle, T, Sreeramulu, S, Loehr, F, Richter, C, Saxena, K, Jonker, H.R.A, Schwalbe, H.
Deposit date:2012-06-19
Release date:2012-08-15
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:The Apo-structure of the Low Molecular Weight Protein-tyrosine Phosphatase A (MptpA) from Mycobacterium tuberculosis Allows for Better Target-specific Drug Development.
J.Biol.Chem., 287, 2012
2N9Q
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BU of 2n9q by Molmil
Photoswitchable G-quadruplex
Descriptor: DNA (5'-D(*GP*GP*(AZW)P*GP*G)-3'), POTASSIUM ION
Authors:Thevarpadam, J, Bessi, I, Binas, O, Goncalves, D.P.N, Slavov, C, Jonker, H.R.A, Richter, C, Wachtveitl, J, Schwalbe, H, Heckel, A.
Deposit date:2015-12-02
Release date:2016-02-17
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Photoresponsive Formation of an Intermolecular Minimal G-Quadruplex Motif.
Angew.Chem.Int.Ed.Engl., 55, 2016

 

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