Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
7B0C
DownloadVisualize
BU of 7b0c by Molmil
[4Fe-4S]-NsrR complexed to 23-bp HmpA1 operator fragment
Descriptor: DNA (5'-D(P*AP*AP*CP*AP*CP*GP*AP*AP*TP*AP*TP*CP*AP*TP*CP*TP*AP*CP*CP*AP*AP*TP*T)-3'), DNA (5'-D(P*AP*AP*TP*TP*GP*GP*TP*AP*GP*AP*TP*GP*AP*TP*AP*TP*TP*CP*GP*TP*GP*TP*T)-3'), HTH-type transcriptional repressor NsrR, ...
Authors:Rohac, R, Fontecilla-Camps, J.C, Volbeda, A.
Deposit date:2020-11-19
Release date:2022-06-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural determinants of DNA recognition by the NO sensor NsrR and related Rrf2-type [FeS]-transcription factors.
Commun Biol, 5, 2022
1CBU
DownloadVisualize
BU of 1cbu by Molmil
ADENOSYLCOBINAMIDE KINASE/ADENOSYLCOBINAMIDE PHOSPHATE GUANYLYLTRANSFERASE (COBU) FROM SALMONELLA TYPHIMURIUM
Descriptor: ADENOSYLCOBINAMIDE KINASE/ADENOSYLCOBINAMIDE PHOSPHATE GUANYLYLTRANSFERASE, SULFATE ION
Authors:Thompson, T.B, Thomas, M.G, Escalante-Semerena, J.C, Rayment, I.
Deposit date:1998-03-12
Release date:1998-12-02
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Three-dimensional structure of adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase from Salmonella typhimurium determined to 2.3 A resolution,.
Biochemistry, 37, 1998
1DDV
DownloadVisualize
BU of 1ddv by Molmil
CRYSTAL STRUCTURE OF THE HOMER EVH1 DOMAIN WITH BOUND MGLUR PEPTIDE
Descriptor: GLGF-DOMAIN PROTEIN HOMER, METABOTROPIC GLUTAMATE RECEPTOR MGLUR5
Authors:Beneken, J, Tu, J.C, Xiao, B, Worley, P.F, Leahy, D.J.
Deposit date:1999-11-11
Release date:2000-05-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of the Homer EVH1 domain-peptide complex reveals a new twist in polyproline recognition.
Neuron, 26, 2000
1DIH
DownloadVisualize
BU of 1dih by Molmil
THREE-DIMENSIONAL STRUCTURE OF E. COLI DIHYDRODIPICOLINATE REDUCTASE
Descriptor: DIHYDRODIPICOLINATE REDUCTASE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Scapin, G, Blanchard, J.S, Sacchettini, J.C.
Deposit date:1994-09-14
Release date:1995-09-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Three-dimensional structure of Escherichia coli dihydrodipicolinate reductase.
Biochemistry, 34, 1995
1DDW
DownloadVisualize
BU of 1ddw by Molmil
HOMER EVH1 DOMAIN UNLIGANDED
Descriptor: GLGF-DOMAIN PROTEIN HOMER
Authors:Beneken, J, Tu, J.C, Xiao, B, Worley, P.F, Leahy, D.J.
Deposit date:1999-11-11
Release date:2000-05-10
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of the Homer EVH1 domain-peptide complex reveals a new twist in polyproline recognition.
Neuron, 26, 2000
6Y45
DownloadVisualize
BU of 6y45 by Molmil
Crystal Structure of the H33A variant of RsrR
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Rohac, R, Volbeda, A, Fontecilla-Camps, J.C.
Deposit date:2020-02-19
Release date:2020-03-04
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Electron and Proton Transfers Modulate DNA Binding by the Transcription Regulator RsrR.
J.Am.Chem.Soc., 142, 2020
6Y42
DownloadVisualize
BU of 6y42 by Molmil
Crystal Structure of RsrR complexed to a 39 basepair DNA fragment of the rsrR promoter
Descriptor: DNA (39-MER), FE2/S2 (INORGANIC) CLUSTER, Rrf2 family transcriptional regulator
Authors:Volbeda, A, Fontecilla-Camps, J.C.
Deposit date:2020-02-19
Release date:2020-03-04
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (4.3 Å)
Cite:Electron and Proton Transfers Modulate DNA Binding by the Transcription Regulator RsrR.
J.Am.Chem.Soc., 142, 2020
6MDR
DownloadVisualize
BU of 6mdr by Molmil
Cryo-EM structure of the Ceru+32/GFP-17 protomer
Descriptor: Ceru+32, GFP-17
Authors:Simon, A.J, Zhou, Y, Ramasubramani, V, Glaser, J, Pothukuchy, A, Golihar, J, Gerberich, J.C, Leggere, J.C, Morrow, B.R, Jung, C, Glotzer, S.C, Taylor, D.W, Ellington, A.D.
Deposit date:2018-09-05
Release date:2019-01-23
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.47 Å)
Cite:Supercharging enables organized assembly of synthetic biomolecules.
Nat Chem, 11, 2019
6HSM
DownloadVisualize
BU of 6hsm by Molmil
Structure of partially reduced RsrR in space group P2(1)2(1)2(1)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, ...
Authors:Volbeda, A, Fontecilla-Camps, J.C.
Deposit date:2018-10-01
Release date:2019-01-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of the Transcription Regulator RsrR Reveals a [2Fe-2S] Cluster Coordinated by Cys, Glu, and His Residues.
J. Am. Chem. Soc., 141, 2019
1D77
DownloadVisualize
BU of 1d77 by Molmil
CRYSTAL STRUCTURE OF A B-DNA DODECAMER CONTAINING INOSINE, D(CGCIAATTCGCG), AT 2.4 ANGSTROMS RESOLUTION AND ITS COMPARISON WITH OTHER B-DNA DODECAMERS
Descriptor: DNA (5'-D(*CP*GP*CP*IP*AP*AP*TP*TP*CP*GP*CP*G)-3')
Authors:Xuan, J.C, Weber, I.T.
Deposit date:1992-05-30
Release date:1993-07-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of a B-DNA dodecamer containing inosine, d(CGCIAATTCGCG), at 2.4 A resolution and its comparison with other B-DNA dodecamers.
Nucleic Acids Res., 20, 1992
1D5Q
DownloadVisualize
BU of 1d5q by Molmil
SOLUTION STRUCTURE OF A MINI-PROTEIN REPRODUCING THE CORE OF THE CD4 SURFACE INTERACTING WITH THE HIV-1 ENVELOPE GLYCOPROTEIN
Descriptor: CHIMERIC MINI-PROTEIN
Authors:Vita, C, Drakopoulou, E, Vizzanova, J, Rochette, S, Martin, L, Menez, A, Roumestand, C, Yang, Y.S, Ylisastigui, L, Benjouad, A, Gluckman, J.C.
Deposit date:1999-10-11
Release date:2000-10-11
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Rational engineering of a miniprotein that reproduces the core of the CD4 site interacting with HIV-1 envelope glycoprotein.
Proc.Natl.Acad.Sci.USA, 96, 1999
1D5S
DownloadVisualize
BU of 1d5s by Molmil
CRYSTAL STRUCTURE OF CLEAVED ANTITRYPSIN POLYMER
Descriptor: P1-ARG ANTITRYPSIN
Authors:Dunstone, M.A, Dai, W, Whisstock, J.C, Rossjohn, J, Pike, R.N, Feil, S.C, Le Bonneic, B.F, Parker, M.W, Bottomley, S.P.
Deposit date:1999-10-11
Release date:2000-04-02
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3 Å)
Cite:Cleaved antitrypsin polymers at atomic resolution.
Protein Sci., 9, 2000
1D0V
DownloadVisualize
BU of 1d0v by Molmil
CRYSTAL STRUCTURE OF NICOTINATE MONONUCLEOTIDE:5,6-DIMETHYLBENZIMIDAZOLE PHOSPHORIBOSYLTRANSFERASE (COBT) FROM SALMONELLA TYPHIMURIUM COMPLEXED WITH ITS REACTION PRODUCTS DETERMINED TO 1.9 A RESOLUTION
Descriptor: ALPHA-RIBAZOLE-5'-PHOSPHATE, NICOTINATE MONONUCLEOTIDE:5,6-DIMETHYLBENZIMIDAZOLE PHOSPHORIBOSYLTRANSFERASE, NICOTINIC ACID
Authors:Cheong, C.-G, Escalante-Semerena, J.C, Rayment, I.
Deposit date:1999-09-14
Release date:1999-12-29
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The three-dimensional structures of nicotinate mononucleotide:5,6- dimethylbenzimidazole phosphoribosyltransferase (CobT) from Salmonella typhimurium complexed with 5,6-dimethybenzimidazole and its reaction products determined to 1.9 A resolution.
Biochemistry, 38, 1999
6HSE
DownloadVisualize
BU of 6hse by Molmil
Structure of dithionite-reduced RsrR in spacegroup P2(1)
Descriptor: FE2/S2 (INORGANIC) CLUSTER, GLYCEROL, Rrf2 family transcriptional regulator, ...
Authors:Volbeda, A, Fontecilla-Camps, J.C.
Deposit date:2018-10-01
Release date:2019-01-30
Last modified:2019-02-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of the Transcription Regulator RsrR Reveals a [2Fe-2S] Cluster Coordinated by Cys, Glu, and His Residues.
J. Am. Chem. Soc., 141, 2019
1CW5
DownloadVisualize
BU of 1cw5 by Molmil
SOLUTION STRUCTURE OF CARNOBACTERIOCIN B2
Descriptor: TYPE IIA BACTERIOCIN CARNOBACTERIOCIN B2
Authors:Wang, Y, Henz, M.E, Gallagher, N.L.F, Chai, S, Yan, L.Z, Gibbs, A.C, Stiles, M.E, Wishart, D.S, Vederas, J.C.
Deposit date:1999-08-25
Release date:1999-09-07
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution structure of carnobacteriocin B2 and implications for structure-activity relationships among type IIa bacteriocins from lactic acid bacteria.
Biochemistry, 38, 1999
1CW6
DownloadVisualize
BU of 1cw6 by Molmil
REFINED SOLUTION STRUCTURE OF LEUCOCIN A
Descriptor: TYPE IIA BACTERIOCIN LEUCOCIN A
Authors:Wang, Y, Henz, M.E, Gallagher, N.L.F, Chai, S, Yan, L.Z, Gibbs, A.C, Stiles, M.E, Wishart, D.S, Vederas, J.C.
Deposit date:1999-08-25
Release date:1999-09-08
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution structure of carnobacteriocin B2 and implications for structure-activity relationships among type IIa bacteriocins from lactic acid bacteria.
Biochemistry, 38, 1999
1D0S
DownloadVisualize
BU of 1d0s by Molmil
CRYSTAL STRUCTURE OF NICOTINATE MONONUCLEOTIDE : 5,6-DIMETHYLBENZIMIDAZOLE PHOSPHORIBOSYLTRANSFERASE (COBT) FROM SALMONELLA TYPHIMURIUM COMPLEXED WITH 5, 6-DIMETHYLBENZIMIDAZOLE
Descriptor: 5,6-DIMETHYLBENZIMIDAZOLE, NICOTINATE MONONUCLEOTIDE:5,6-DIMETHYLBENZIMIDAZOLE PHOSPHORIBOSYLTRANSFERASE, PHOSPHATE ION
Authors:Cheong, C.-G, Escalante-Semerena, J.C, Rayment, I.
Deposit date:1999-09-14
Release date:1999-12-29
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The three-dimensional structures of nicotinate mononucleotide:5,6- dimethylbenzimidazole phosphoribosyltransferase (CobT) from Salmonella typhimurium complexed with 5,6-dimethybenzimidazole and its reaction products determined to 1.9 A resolution.
Biochemistry, 38, 1999
1DDY
DownloadVisualize
BU of 1ddy by Molmil
MOLECULAR RECOGNITION BY THE VITAMIN B12 RNA APTAMER
Descriptor: COBALAMIN, METHYLAMINE, VITAMIN B12 BINDING RNA
Authors:Sussman, D, Nix, J.C, Wilson, C.
Deposit date:1999-11-12
Release date:2000-01-01
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3 Å)
Cite:The structural basis for molecular recognition by the vitamin B 12 RNA aptamer.
Nat.Struct.Biol., 7, 2000
1DGL
DownloadVisualize
BU of 1dgl by Molmil
LECTIN FROM DIOCLEA GRANDIFLORA COMPLEXED TO TRIMANNOSIDE
Descriptor: CALCIUM ION, LECTIN, MANGANESE (II) ION, ...
Authors:Rozwarski, D.A, Swami, B.M, Brewer, C.F, Sacchettini, J.C.
Deposit date:1998-02-10
Release date:1999-06-01
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of the lectin from Dioclea grandiflora complexed with core trimannoside of asparagine-linked carbohydrates.
J.Biol.Chem., 273, 1998
1DDN
DownloadVisualize
BU of 1ddn by Molmil
DIPHTHERIA TOX REPRESSOR (C102D MUTANT)/TOX DNA OPERATOR COMPLEX
Descriptor: 33 BASE DNA CONTAINING TOXIN OPERATOR, DIPHTHERIA TOX REPRESSOR, NICKEL (II) ION
Authors:White, A, Ding, X, Vanderspek, J.C, Murphy, J.R, Ringe, D.
Deposit date:1998-06-23
Release date:1998-10-14
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of the metal-ion-activated diphtheria toxin repressor/tox operator complex.
Nature, 394, 1998
1DDI
DownloadVisualize
BU of 1ddi by Molmil
CRYSTAL STRUCTURE OF SIR-FP60
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, SULFITE REDUCTASE [NADPH] FLAVOPROTEIN ALPHA-COMPONENT
Authors:Gruez, A, Pignol, D, Zeghouf, M, Coves, J, Fontecave, M, Ferrer, J.L, Fontecilla-Camps, J.C.
Deposit date:1999-11-10
Release date:2000-11-13
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Four crystal structures of the 60 kDa flavoprotein monomer of the sulfite reductase indicate a disordered flavodoxin-like module.
J.Mol.Biol., 299, 2000
1BEO
DownloadVisualize
BU of 1beo by Molmil
BETA-CRYPTOGEIN
Descriptor: BETA-CRYPTOGEIN
Authors:Boissy, G, De La Fortelle, E, Kahn, R, Huet, J.C, Bricogne, G, Pernollet, J.C, Brunie, S.
Deposit date:1996-08-02
Release date:1997-05-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of a fungal elicitor secreted by Phytophthora cryptogea, a member of a novel class of plant necrotic proteins.
Structure, 4, 1996
7ZIO
DownloadVisualize
BU of 7zio by Molmil
JC Polyomavirus VP1 in complex with 6'-Sialyllactose glycomacromolecules (aromatic linker)
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Freytag, J, Mueller, J.C, Stehle, T.
Deposit date:2022-04-08
Release date:2022-12-21
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.751 Å)
Cite:Synthesis of Homo- and Heteromultivalent Fucosylated and Sialylated Oligosaccharide Conjugates via Preactivated N -Methyloxyamine Precision Macromolecules and Their Binding to Polyomavirus Capsid Proteins.
Biomacromolecules, 23, 2022
7ZIM
DownloadVisualize
BU of 7zim by Molmil
JC Polyomavirus VP1 in complex with 3'-Sialyllactose glycomacromolecules (aromatic linker)
Descriptor: DI(HYDROXYETHYL)ETHER, Major capsid protein VP1, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose, ...
Authors:Freytag, J, Mueller, J.C, Stehle, T.
Deposit date:2022-04-08
Release date:2022-12-21
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Synthesis of Homo- and Heteromultivalent Fucosylated and Sialylated Oligosaccharide Conjugates via Preactivated N -Methyloxyamine Precision Macromolecules and Their Binding to Polyomavirus Capsid Proteins.
Biomacromolecules, 23, 2022
7ZIN
DownloadVisualize
BU of 7zin by Molmil
JC Polyomavirus VP1 in complex with 6'-Sialyllactose glycomacromolecules (aliphatic linker)
Descriptor: 1,2-ETHANEDIOL, Major capsid protein VP1, N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose, ...
Authors:Freytag, J, Mueller, J.C, Stehle, T.
Deposit date:2022-04-08
Release date:2022-12-21
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.648 Å)
Cite:Synthesis of Homo- and Heteromultivalent Fucosylated and Sialylated Oligosaccharide Conjugates via Preactivated N -Methyloxyamine Precision Macromolecules and Their Binding to Polyomavirus Capsid Proteins.
Biomacromolecules, 23, 2022

218500

PDB entries from 2024-04-17

PDB statisticsPDBj update infoContact PDBjnumon