Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
1A99
DownloadVisualize
BU of 1a99 by Molmil
PUTRESCINE RECEPTOR (POTF) FROM E. COLI
Descriptor: 1,4-DIAMINOBUTANE, PUTRESCINE-BINDING PROTEIN
Authors:Vassylyev, D.G, Tomitori, H, Kashiwagi, K, Morikawa, K, Igarashi, K.
Deposit date:1998-04-17
Release date:1998-10-21
Last modified:2020-04-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure and mutational analysis of the Escherichia coli putrescine receptor. Structural basis for substrate specificity.
J.Biol.Chem., 273, 1998
8X38
DownloadVisualize
BU of 8x38 by Molmil
Crystal Structure of Decarboxylative Vanillate 1-Hydroxylase from Phanerochaete chrysosporium
Descriptor: ACETATE ION, Decarboxylative Vanillate 1-Hydroxylase, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Suzuki, H, Mori, R, Ishida, T, Igarashi, K, Shimizu, M.
Deposit date:2023-11-12
Release date:2024-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Decarboxylative Vanillate 1-Hydroxylase from Phanerochaete chrysosporium
To Be Published
6JWF
DownloadVisualize
BU of 6jwf by Molmil
Holo form of Pyranose Dehydrogenase PQQ domain from Coprinopsis cinerea
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, ...
Authors:Takeda, K, Ishida, T, Yoshida, M, Samejima, M, Ohno, H, Igarashi, K, Nakamura, N.
Deposit date:2019-04-20
Release date:2019-11-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Crystal Structure of the Catalytic and CytochromebDomains in a Eukaryotic Pyrroloquinoline Quinone-Dependent Dehydrogenase.
Appl.Environ.Microbiol., 85, 2019
4ZM7
DownloadVisualize
BU of 4zm7 by Molmil
PcCel45A N105D mutatnt at cryo condition
Descriptor: Endoglucanase V-like protein
Authors:Nakamura, A, Ishida, T, Samejima, M, Igarashi, K.
Deposit date:2015-05-02
Release date:2015-09-02
Last modified:2020-01-01
Method:X-RAY DIFFRACTION (0.701 Å)
Cite:"Newton's cradle" proton relay with amide-imidic acid tautomerization in inverting cellulase visualized by neutron crystallography.
Sci Adv, 1, 2015
7VC6
DownloadVisualize
BU of 7vc6 by Molmil
The structure of beta-xylosidase from Phanerochaete chrysosporium(PcBxl3)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, xylan 1,4-beta-xylosidase
Authors:Kojima, K, Sunagawa, N, Igarashi, K.
Deposit date:2021-09-01
Release date:2022-02-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:Comparison of glycoside hydrolase family 3 beta-xylosidases from basidiomycetes and ascomycetes reveals evolutionarily distinct xylan degradation systems.
J.Biol.Chem., 298, 2022
7VC7
DownloadVisualize
BU of 7vc7 by Molmil
The structure of beta-xylosidase from Phanerochaete chrysosporium(PcBxl3)
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, DI(HYDROXYETHYL)ETHER, ...
Authors:Kojima, K, Sunagawa, N, Igarashi, K.
Deposit date:2021-09-01
Release date:2022-02-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.08 Å)
Cite:Comparison of glycoside hydrolase family 3 beta-xylosidases from basidiomycetes and ascomycetes reveals evolutionarily distinct xylan degradation systems.
J.Biol.Chem., 298, 2022
6IK8
DownloadVisualize
BU of 6ik8 by Molmil
Crystal structure of tomato beta-galactosidase (TBG) 4 in complex with beta-1,6-galactobiose
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-galactosidase, ...
Authors:Matsuyama, K, Nakae, S, Igarashi, K, Tada, T, Ishimaru, M.
Deposit date:2018-10-15
Release date:2018-11-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Substrate-recognition mechanism of tomato beta-galactosidase 4 using X-ray crystallography and docking simulation.
Planta, 252, 2020
6IK5
DownloadVisualize
BU of 6ik5 by Molmil
Crystal structure of tomato beta-galactosidase (TBG) 4 in complex with galactose
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-galactosidase, ...
Authors:Matsuyama, K, Nakae, S, Igarashi, K, Tada, T, Ishimaru, M.
Deposit date:2018-10-15
Release date:2018-11-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Substrate-recognition mechanism of tomato beta-galactosidase 4 using X-ray crystallography and docking simulation.
Planta, 252, 2020
6IK7
DownloadVisualize
BU of 6ik7 by Molmil
Crystal structure of tomato beta-galactosidase (TBG) 4 in complex with beta-1,3-galactobiose
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-galactosidase, ...
Authors:Matsuyama, K, Nakae, S, Igarashi, K, Tada, T, Ishimaru, M.
Deposit date:2018-10-15
Release date:2018-11-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Substrate-recognition mechanism of tomato beta-galactosidase 4 using X-ray crystallography and docking simulation.
Planta, 252, 2020
6IK6
DownloadVisualize
BU of 6ik6 by Molmil
Crystal structure of Tomato beta-galactosidase (TBG) 4 with beta-1,4-galactobiose
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-galactosidase, ...
Authors:Matsuyama, K, Nakae, S, Igarashi, K, Tada, T, Ishimaru, M.
Deposit date:2018-10-15
Release date:2018-11-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.791 Å)
Cite:Substrate-recognition mechanism of tomato beta-galactosidase 4 using X-ray crystallography and docking simulation.
Planta, 252, 2020
7YK9
DownloadVisualize
BU of 7yk9 by Molmil
Neutron Structure of PcyA I86D Mutant Complexed with Biliverdin at Room Temperature
Descriptor: 3-[5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-2-[[5-[(Z)-(3-ethenyl-4-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1H-pyrrol-2-yl]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid, Phycocyanobilin:ferredoxin oxidoreductase
Authors:Unno, M, Igarashi, K.
Deposit date:2022-07-22
Release date:2023-01-25
Method:NEUTRON DIFFRACTION (1.9 Å), X-RAY DIFFRACTION
Cite:Neutron crystallography and quantum chemical analysis of bilin reductase PcyA mutants reveal substrate and catalytic residue protonation states.
J.Biol.Chem., 299, 2022
6JT5
DownloadVisualize
BU of 6jt5 by Molmil
Crystal structure of PQQ doamin of Pyranose Dehydrogenase from Coprinopsis cinerea: apo-from
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Extracellular PQQ-dependent sugar dehydrogenase, ...
Authors:Takeda, K, Ishida, T, Yoshida, M, Samejima, M, Ohno, H, Igarashi, K, Nakamura, N.
Deposit date:2019-04-09
Release date:2019-11-06
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal Structure of the Catalytic and CytochromebDomains in a Eukaryotic Pyrroloquinoline Quinone-Dependent Dehydrogenase.
Appl.Environ.Microbiol., 85, 2019
6JT6
DownloadVisualize
BU of 6jt6 by Molmil
Crystal structure of cytochrome b domain of Pyranose Dehydrogenase from Coprinopsis cinerea
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, ...
Authors:Takeda, K, Ishida, T, Yoshida, M, Samejima, M, Ohno, H, Igarashi, K, Nakamura, N.
Deposit date:2019-04-09
Release date:2019-11-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of the Catalytic and CytochromebDomains in a Eukaryotic Pyrroloquinoline Quinone-Dependent Dehydrogenase.
Appl.Environ.Microbiol., 85, 2019
7BYT
DownloadVisualize
BU of 7byt by Molmil
Crystal structure of exo-beta-1,3-galactanase from Phanerochaete chrysosporium Pc1,3Gal43A with galactose
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, ...
Authors:Matsuyama, K, Ishida, T, Kishine, N, Fujimoto, Z, Igarashi, K, Kaneko, S.
Deposit date:2020-04-24
Release date:2020-11-04
Last modified:2021-01-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Unique active-site and subsite features in the arabinogalactan-degrading GH43 exo-beta-1,3-galactanase from Phanerochaete chrysosporium .
J.Biol.Chem., 295, 2020
7BYX
DownloadVisualize
BU of 7byx by Molmil
Crystal structure of exo-beta-1,3-galactanase from Phanerochaete chrysosporium Pc1,3Gal43A E208A with beta-1,3-galactotriose
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Matsuyama, K, Ishida, T, Kishine, N, Fujimoto, Z, Igarashi, K, Kaneko, S.
Deposit date:2020-04-24
Release date:2020-11-04
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Unique active-site and subsite features in the arabinogalactan-degrading GH43 exo-beta-1,3-galactanase from Phanerochaete chrysosporium .
J.Biol.Chem., 295, 2020
7BYS
DownloadVisualize
BU of 7bys by Molmil
Crystal structure of exo-beta-1,3-galactanase from Phanerochaete chrysosporium Pc1,3Gal43A apo form
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, CITRIC ACID, ...
Authors:Matsuyama, K, Ishida, T, Kishine, N, Fujimoto, Z, Igarashi, K, Kaneko, S.
Deposit date:2020-04-24
Release date:2020-11-04
Last modified:2021-01-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Unique active-site and subsite features in the arabinogalactan-degrading GH43 exo-beta-1,3-galactanase from Phanerochaete chrysosporium .
J.Biol.Chem., 295, 2020
7BYV
DownloadVisualize
BU of 7byv by Molmil
Crystal structure of exo-beta-1,3-galactanase from Phanerochaete chrysosporium Pc1,3Gal43A E208Q with beta-1,3-galactotriose
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Galactan 1,3-beta-galactosidase, ...
Authors:Matsuyama, K, Ishida, T, Kishine, N, Fujimoto, Z, Igarashi, K, Kaneko, S.
Deposit date:2020-04-24
Release date:2020-11-04
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Unique active-site and subsite features in the arabinogalactan-degrading GH43 exo-beta-1,3-galactanase from Phanerochaete chrysosporium .
J.Biol.Chem., 295, 2020
7CBD
DownloadVisualize
BU of 7cbd by Molmil
Catalytic domain of Cellulomonas fimi Cel6B
Descriptor: Exoglucanase A
Authors:Nakamura, A, Ishiwata, D, Visootsat, A, Uchiyama, T, Mizutani, K, Kaneko, S, Murata, T, Igarashi, K, Iino, R.
Deposit date:2020-06-12
Release date:2020-08-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Domain architecture divergence leads to functional divergence in binding and catalytic domains of bacterial and fungal cellobiohydrolases.
J.Biol.Chem., 295, 2020
8H2W
DownloadVisualize
BU of 8h2w by Molmil
Cellodextrin phosphorylase from Clostridium thermocellum mutant - all cysteine residues were substituted with serines
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, CHLORIDE ION, ...
Authors:Kuga, T, Sunagawa, N, Igarashi, K.
Deposit date:2022-10-07
Release date:2023-10-11
Method:X-RAY DIFFRACTION (1.21 Å)
Cite:11 cysteine-to-serine mutations improve stability of cellodextrin phosphorylase from Clostridium thermocellum
To Be Published
8H2V
DownloadVisualize
BU of 8h2v by Molmil
Cellodextrin phosphorylase from Clostridium thermocellum mutant - all cysteine residues were substituted with serines
Descriptor: ACETATE ION, CHLORIDE ION, Cellodextrin phosphorylase, ...
Authors:Kuga, T, Sunagawa, N, Igarashi, K.
Deposit date:2022-10-07
Release date:2023-10-11
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:11 cysteine-to-serine mutations improve stability of cellodextrin phosphorylase from Clostridium thermocellum
To Be Published
8H2K
DownloadVisualize
BU of 8h2k by Molmil
Cellodextrin phosphorylase from Clostridium thermocellum mutant - all cysteine residues were substituted with serines
Descriptor: ACETATE ION, CHLORIDE ION, Cellodextrin phosphorylase, ...
Authors:Kuga, T, Sunagawa, N, Igarashi, K.
Deposit date:2022-10-06
Release date:2023-10-11
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:11 cysteine-to-serine mutations improve stability of cellodextrin phosphorylase from Clostridium thermocellum
To Be Published
8H6H
DownloadVisualize
BU of 8h6h by Molmil
cryo-EM structure of cellodextrin phosphorylase from Clostridium thermocellum
Descriptor: CHLORIDE ION, Cellodextrin phosphorylase
Authors:Kuga, T, Sunagawa, N, Igarashi, K.
Deposit date:2022-10-17
Release date:2023-10-25
Method:ELECTRON MICROSCOPY (2.3 Å)
Cite:structure and dynamics of cellodextrin phosphorylase from Clostridium thermocellum determine chain length and crystalline packing of highly ordered cellulose II synthesized in vitro
To Be Published
8HNU
DownloadVisualize
BU of 8hnu by Molmil
Cellodextrin phosphorylase stable variant from Clostridium thermocellum
Descriptor: CHLORIDE ION, Cellodextrin phosphorylase
Authors:Kuga, T, Sunagawa, N, Igarashi, K.
Deposit date:2022-12-08
Release date:2023-12-13
Method:ELECTRON MICROSCOPY (2.28 Å)
Cite:11 cysteine-to-serine mutations improve the stability of cellodextrin phosphorylase
To Be Published
8HO8
DownloadVisualize
BU of 8ho8 by Molmil
The cryo-EM structure of cellobiose phosphorylase from Clostridium thermocellum in complex with cellobiose
Descriptor: Cellobiose phosphorylase, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
Authors:Iriya, S, Kuga, T, Sunagawa, N, Igarashi, K.
Deposit date:2022-12-09
Release date:2023-12-13
Method:ELECTRON MICROSCOPY (2.24 Å)
Cite:The cryo-EM structure of cellobiose phosphorylase from Clostridium thermocellum in complex with cellobiose
To Be Published
8HO9
DownloadVisualize
BU of 8ho9 by Molmil
The cryo-EM structure of cellobiose phosphorylase from Clostridium thermocellum (cysteine-to-serine varient)
Descriptor: Cellobiose phosphorylase
Authors:Iriya, S, Kuga, T, Sunagawa, N, Igarashi, K.
Deposit date:2022-12-09
Release date:2023-12-13
Method:ELECTRON MICROSCOPY (2.25 Å)
Cite:The cryo-EM structure of cellobiose phosphorylase from Clostridium thermocellum
To Be Published

 

1234>

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon