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1TJA
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BU of 1tja by Molmil
Fitting of gp8, gp9, and gp11 into the cryo-EM reconstruction of the bacteriophage T4 contracted tail
Descriptor: Baseplate structural protein Gp11, Baseplate structural protein Gp8, Baseplate structural protein Gp9
Authors:Leiman, P.G, Chipman, P.R, Kostyuchenko, V.A, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:2004-06-03
Release date:2004-08-31
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (16 Å)
Cite:Three-dimensional rearrangement of proteins in the tail of bacteriophage t4 on infection of its host
Cell(Cambridge,Mass.), 118, 2004
1EL6
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BU of 1el6 by Molmil
STRUCTURE OF BACTERIOPHAGE T4 GENE PRODUCT 11, THE INTERFACE BETWEEN THE BASEPLATE AND SHORT TAIL FIBERS
Descriptor: BASEPLATE STRUCTURAL PROTEIN GP11
Authors:Leiman, P.G, Kostyuchenko, V.A, Schneider, M.M, Kurochkina, L.P, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:2000-03-13
Release date:2000-04-05
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of bacteriophage T4 gene product 11, the interface between the baseplate and short tail fibers.
J.Mol.Biol., 301, 2000
6ORJ
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BU of 6orj by Molmil
Central spike of phiKZ phage tail
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, PHIKZ164, ...
Authors:Leiman, P.G, Browning, C, Shneider, M.M.
Deposit date:2019-04-30
Release date:2019-06-19
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:Central spike of phiKZ phage tail
To Be Published
2FKK
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BU of 2fkk by Molmil
Crystal structure of the C-terminal domain of the bacteriophage T4 gene product 10
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, BROMIDE ION, ...
Authors:Leiman, P.G, Shneider, M.M, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:2006-01-04
Release date:2006-04-04
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Evolution of bacteriophage tails: structure of t4 gene product 10
J.Mol.Biol., 358, 2006
2FL9
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BU of 2fl9 by Molmil
Evolution of bacteriophage tails: Structure of T4 gene product 10
Descriptor: Baseplate structural protein Gp10
Authors:Leiman, P.G, Shneider, M.M, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:2006-01-05
Release date:2006-04-04
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (17 Å)
Cite:Evolution of bacteriophage tails: structure of t4 gene product 10
J.Mol.Biol., 358, 2006
2FL8
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BU of 2fl8 by Molmil
Fitting of the gp10 trimer structure into the cryoEM map of the bacteriophage T4 baseplate in the hexagonal conformation.
Descriptor: Baseplate structural protein Gp10
Authors:Leiman, P.G, Shneider, M.M, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:2006-01-05
Release date:2006-04-04
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Evolution of bacteriophage tails: structure of t4 gene product 10
J.Mol.Biol., 358, 2006
1N80
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BU of 1n80 by Molmil
Bacteriophage T4 baseplate structural protein gp8
Descriptor: CHLORIDE ION, baseplate structural protein gp8
Authors:Leiman, P.G, Shneider, M.M, Kostyuchenko, V.A, Chipman, P.R, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:2002-11-18
Release date:2003-06-10
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structure and location of gene product 8 in the bacteriophage T4 baseplate
J.Mol.Biol., 328, 2003
1N7Z
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BU of 1n7z by Molmil
Structure and location of gene product 8 in the bacteriophage T4 baseplate
Descriptor: CHLORIDE ION, baseplate structural protein gp8
Authors:Leiman, P.G, Shneider, M.M, Kostyuchenko, V.A, Chipman, P.R, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:2002-11-18
Release date:2003-06-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and location of gene product 8 in the bacteriophage T4 baseplate
J.Mol.Biol., 328, 2003
1N8B
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BU of 1n8b by Molmil
Bacteriophage T4 baseplate structural protein gp8
Descriptor: BROMIDE ION, baseplate structural protein gp8
Authors:Leiman, P.G, Shneider, M.M, Kostyuchenko, V.A, Chipman, P.R, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:2002-11-20
Release date:2003-06-10
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure and location of gene product 8 in the bacteriophage T4 baseplate
J.Mol.Biol., 328, 2003
7UM1
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BU of 7um1 by Molmil
Structure of bacteriophage AR9 non-virion RNAP polymerase holoenzyme determined by cryo-EM
Descriptor: DNA-directed RNA polymerase, DNA-directed RNA polymerase beta subunit, DNA-directed RNA polymerase beta' subunit, ...
Authors:Leiman, P.G, Fraser, A, Sokolova, M.L.
Deposit date:2022-04-05
Release date:2022-07-06
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Structural basis of template strand deoxyuridine promoter recognition by a viral RNA polymerase.
Nat Commun, 13, 2022
7UM0
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BU of 7um0 by Molmil
Structure of the phage AR9 non-virion RNA polymerase holoenzyme in complex with two DNA oligonucleotides containing the AR9 P077 promoter as determined by cryo-EM
Descriptor: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, 2'-DEOXYURIDINE-5'-MONOPHOSPHATE, DNA-directed RNA polymerase, ...
Authors:Leiman, P.G, Fraser, A, Sokolova, M.L.
Deposit date:2022-04-05
Release date:2022-07-06
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural basis of template strand deoxyuridine promoter recognition by a viral RNA polymerase.
Nat Commun, 13, 2022
7S00
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BU of 7s00 by Molmil
X-ray structure of the phage AR9 non-virion RNA polymerase core
Descriptor: DNA-directed RNA polymerase, DNA-directed RNA polymerase beta subunit, DNA-directed RNA polymerase beta' subunit, ...
Authors:Leiman, P.G, Sokolova, M.L, Fraser, A.
Deposit date:2021-08-28
Release date:2022-07-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural basis of template strand deoxyuridine promoter recognition by a viral RNA polymerase.
Nat Commun, 13, 2022
7S01
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BU of 7s01 by Molmil
X-ray structure of the phage AR9 non-virion RNA polymerase holoenzyme in complex with a forked oligonucleotide containing the P077 promoter
Descriptor: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE, 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, ...
Authors:Leiman, P.G, Sokolova, M.L, Gordeeva, J, Fraser, A, Severinov, K.V.
Deposit date:2021-08-28
Release date:2022-07-06
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structural basis of template strand deoxyuridine promoter recognition by a viral RNA polymerase.
Nat Commun, 13, 2022
6VR4
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BU of 6vr4 by Molmil
Virion-packaged DNA-dependent RNA polymerase of crAss-like phage phi14:2
Descriptor: CHLORIDE ION, DNA-dependent RNA polymerase, SODIUM ION
Authors:Leiman, P.G, Sokolova, M.L.
Deposit date:2020-02-06
Release date:2020-07-29
Last modified:2021-01-20
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structure and function of virion RNA polymerase of a crAss-like phage.
Nature, 589, 2020
5IW9
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BU of 5iw9 by Molmil
Structure of bacteriophage T4 gp25, sheath polymerization initiator
Descriptor: Baseplate wedge protein gp25
Authors:Leiman, P.G, Browning, C, Shneider, M.M.
Deposit date:2016-03-22
Release date:2016-05-11
Last modified:2016-06-08
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Structure of the T4 baseplate and its function in triggering sheath contraction.
Nature, 533, 2016
6E0V
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BU of 6e0v by Molmil
Apo crystal structure of the colanidase tailspike protein gp150 of Phage Phi92
Descriptor: 1,2-ETHANEDIOL, Bacteriophage Phi92 gp150, CHLORIDE ION, ...
Authors:Leiman, P.G, Browning, C, Gerardy-Schahn, R, Shneider, M.M, Plattner, M, Schwarzer, D.
Deposit date:2018-07-07
Release date:2019-07-17
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of the colanidase tailspike protein gp150 of Phage Phi92 complexed with one repeating unit of colanic acid
To Be Published
5LYE
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BU of 5lye by Molmil
Re-refined structure of the bacteriophage T4 short tail fibre PDB entry 1H6W containing 71 additionally identified residues
Descriptor: CHLORIDE ION, Gp12, SULFATE ION
Authors:van Raaij, M.J, Taylor, N.M.I, Leiman, P.G.
Deposit date:2016-09-27
Release date:2018-01-17
Last modified:2019-11-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Contractile injection systems of bacteriophages and related systems.
Mol. Microbiol., 108, 2018
7CN7
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BU of 7cn7 by Molmil
T4 phage spackle protein gp61.3 complex with lysozyme domain of gp5 tail lysozyme
Descriptor: 1,2-ETHANEDIOL, 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, Baseplate central spike complex protein gp5, ...
Authors:Kanamaru, S, Leiman, P.G.
Deposit date:2020-07-30
Release date:2020-10-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Structure and Function of the T4 Spackle Protein Gp61.3.
Viruses, 12, 2020
6P20
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BU of 6p20 by Molmil
Bacteriophage phiKZ gp163.1 PAAR repeat protein in complex with a T4 gp5 beta-helix fragment modified to mimic the phiKZ central spike gp164
Descriptor: 1,2-ETHANEDIOL, 9-OCTADECENOIC ACID, Baseplate central spike complex protein gp5,PHIKZ164, ...
Authors:Buth, S.A, Shneider, M.M, Leiman, P.G.
Deposit date:2019-05-20
Release date:2020-05-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.749 Å)
Cite:Bacteriophage phiKZ gp163.1 PAAR repeat protein in complex with a T4 gp5 beta-helix fragment modified to mimic the phiKZ central spike gp164
To Be Published
6P1Z
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BU of 6p1z by Molmil
Bacteriophage phiKZ gp163.1 PAAR repeat protein in complex with the C-terminal part of the T4 gp5 beta-helical domain
Descriptor: 9-OCTADECENOIC ACID, Baseplate central spike complex protein gp5, MAGNESIUM ION, ...
Authors:Buth, S.A, Shneider, M.M, Leiman, P.G.
Deposit date:2019-05-20
Release date:2020-05-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.099 Å)
Cite:Bacteriophage phiKZ gp163.1 PAAR repeat protein in complex with the C-terminal part of the T4 gp5 beta-helical domain
To Be Published
6P22
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BU of 6p22 by Molmil
Photorhabdus Virulence Cassette (PVC) PAAR repeat protein Pvc10 in complex with a T4 gp5 beta-helix fragment modified to mimic Pvc8, the central spike protein of PVC
Descriptor: 9-OCTADECENOIC ACID, CHIMERA OF CENTRAL SPIKE PROTEINS GP5 FROM PHAGE T4 AND PVC8 FROM PVC, MAGNESIUM ION, ...
Authors:Buth, S.A, Shneider, M.M, Leiman, P.G.
Deposit date:2019-05-20
Release date:2020-05-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.291 Å)
Cite:Photorhabdus Virulence Cassette (PVC) PAAR repeat protein Pvc10 in complex with a T4 gp5 beta-helix fragment modified to mimic Pvc8, the central spike protein of PVC
To Be Published
6P2A
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BU of 6p2a by Molmil
Chimera of bacteriophage OBP gp146 central spike protein and a T4 gp5 beta-helix fragment
Descriptor: 9-OCTADECENOIC ACID, CHIMERA OF BACTERIOPHAGE OBP GP146 AND A T4 GP5, FE (II) ION, ...
Authors:Buth, S.A, Shneider, M.M, Leiman, P.G.
Deposit date:2019-05-21
Release date:2020-05-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Chimera of bacteriophage OBP gp146 central spike protein and a T4 gp5 beta-helix fragment
To Be Published
5CES
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BU of 5ces by Molmil
C-terminal domain of the R-type pyocin baseplate protein PA0618
Descriptor: PA0618
Authors:Plattner, M, Buth, S.A, Shneider, M.M, Leiman, P.G.
Deposit date:2015-07-07
Release date:2016-07-27
Last modified:2020-05-13
Method:X-RAY DIFFRACTION (2.102 Å)
Cite:Action of a minimal contractile bactericidal nanomachine.
Nature, 580, 2020
6HHK
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BU of 6hhk by Molmil
Structure of gp105 of Listeria bacteriophage A511
Descriptor: CHLORIDE ION, Gp105
Authors:Taylor, N.M.I, Guerrero-Ferreira, R.C, Leiman, P.G.
Deposit date:2018-08-28
Release date:2019-01-23
Last modified:2019-02-13
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Structure and transformation of bacteriophage A511 baseplate and tail upon infection ofListeriacells.
EMBO J., 38, 2019
6HX0
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BU of 6hx0 by Molmil
Cell wall binding domain of endolysin from Listeria phage A500.
Descriptor: L-alanyl-D-glutamate peptidase
Authors:Dunne, M, Taylor, N.M.I, Shen, Y, Loessner, M.J, Leiman, P.G.
Deposit date:2018-10-15
Release date:2019-10-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Structural basis for recognition of bacterial cell wall teichoic acid by pseudo-symmetric SH3b-like repeats of a viral peptidoglycan hydrolase
Chem Sci, 2020

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PDB entries from 2024-03-27

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