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3KO1
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BU of 3ko1 by Molmil
Cystal structure of thermosome from Acidianus tengchongensis strain S5
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Chaperonin
Authors:Huo, Y, Zhang, K, Hu, Z, Wang, L, Zhai, Y, Zhou, Q, Lander, G, He, Y, Zhu, J, Xu, W, Dong, Z, Sun, F.
Deposit date:2009-11-12
Release date:2010-11-03
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Crystal structure of group II chaperonin in the open state.
Structure, 18, 2010
6IQW
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BU of 6iqw by Molmil
Cryo-EM structure of Csm effector complex
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Csm1, Csm2, ...
Authors:Huo, Y, Li, T, Wang, N, Dong, Q, Wang, X, Jiang, T.
Deposit date:2018-11-09
Release date:2019-01-16
Last modified:2019-11-06
Method:ELECTRON MICROSCOPY (3.35 Å)
Cite:Cryo-EM structure of Type III-A CRISPR effector complex.
Cell Res., 28, 2018
7YND
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BU of 7ynd by Molmil
Cryo-EM structure of Cas7-11-crRNA-Csx29 ternary complex
Descriptor: CHAT domain-containing protein, CRISPR-associated RAMP family protein, crRNA (38-MER)
Authors:Huo, Y, Dong, Q, Zhao, H, Jiang, T.
Deposit date:2022-07-30
Release date:2023-02-01
Last modified:2023-03-15
Method:ELECTRON MICROSCOPY (3.29 Å)
Cite:Cryo-EM structure and protease activity of the type III-E CRISPR-Cas effector.
Nat Microbiol, 8, 2023
7YN9
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BU of 7yn9 by Molmil
Cryo-EM structure of Cas7-11-crRNA binary complex
Descriptor: CRISPR-associated RAMP family protein, crRNA
Authors:Huo, Y, Dong, Q, Zhao, H, Jiang, T.
Deposit date:2022-07-30
Release date:2023-02-01
Last modified:2023-03-15
Method:ELECTRON MICROSCOPY (3.53 Å)
Cite:Cryo-EM structure and protease activity of the type III-E CRISPR-Cas effector.
Nat Microbiol, 8, 2023
7YNA
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BU of 7yna by Molmil
Cryo-EM structure of Cas7-11-crRNA bound to target RNA-1
Descriptor: CRISPR-associated RAMP family protein, Target RNA-1 (25-MER), crRNA (38-MER)
Authors:Huo, Y, Dong, Q, Zhao, H, Jiang, T.
Deposit date:2022-07-30
Release date:2023-02-01
Last modified:2023-03-15
Method:ELECTRON MICROSCOPY (3.64 Å)
Cite:Cryo-EM structure and protease activity of the type III-E CRISPR-Cas effector.
Nat Microbiol, 8, 2023
7YNC
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BU of 7ync by Molmil
Cryo-EM structure of Cas7-11-crRNA bound to target RNA-3
Descriptor: CRISPR-associated RAMP family protein, Target RNA-3 (28-MER), crRNA (38-MER)
Authors:Huo, Y, Dong, Q, Zhao, H, Jiang, T.
Deposit date:2022-07-30
Release date:2023-02-01
Last modified:2023-03-15
Method:ELECTRON MICROSCOPY (3.14 Å)
Cite:Cryo-EM structure and protease activity of the type III-E CRISPR-Cas effector.
Nat Microbiol, 8, 2023
7YNB
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BU of 7ynb by Molmil
Cryo-EM structure of Cas7-11-crRNA bound to target RNA-2
Descriptor: CRISPR-associated RAMP family protein, Target RNA-2 (28-MER), crRNA (38-MER)
Authors:Huo, Y, Dong, Q, Zhao, H, Jiang, T.
Deposit date:2022-07-30
Release date:2023-02-01
Last modified:2023-03-15
Method:ELECTRON MICROSCOPY (3.46 Å)
Cite:Cryo-EM structure and protease activity of the type III-E CRISPR-Cas effector.
Nat Microbiol, 8, 2023
4QQZ
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BU of 4qqz by Molmil
Crystal structure of T. fusca Cas3-AMPPNP
Descriptor: CRISPR-associated helicase, Cas3 family, DNA (5'-D(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), ...
Authors:Ke, A, Huo, Y, Nam, K.H.
Deposit date:2014-06-30
Release date:2014-08-27
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.93 Å)
Cite:Structures of CRISPR Cas3 offer mechanistic insights into Cascade-activated DNA unwinding and degradation.
Nat.Struct.Mol.Biol., 21, 2014
4QQY
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BU of 4qqy by Molmil
Crystal structure of T. fusca Cas3-ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CRISPR-associated helicase, Cas3 family, ...
Authors:Ke, A, Huo, Y, Nam, K.H.
Deposit date:2014-06-30
Release date:2014-08-27
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.12 Å)
Cite:Structures of CRISPR Cas3 offer mechanistic insights into Cascade-activated DNA unwinding and degradation.
Nat.Struct.Mol.Biol., 21, 2014
4QQX
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BU of 4qqx by Molmil
Crystal structure of T. fusca Cas3-ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CRISPR-associated helicase, Cas3 family, ...
Authors:Ke, A, Huo, Y, Nam, K.H.
Deposit date:2014-06-30
Release date:2014-08-20
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.34 Å)
Cite:Structures of CRISPR Cas3 offer mechanistic insights into Cascade-activated DNA unwinding and degradation.
Nat.Struct.Mol.Biol., 21, 2014
4QQW
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BU of 4qqw by Molmil
Crystal structure of T. fusca Cas3
Descriptor: CRISPR-associated helicase, Cas3 family, DNA (5'-D(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), ...
Authors:Ke, A, Huo, Y, Nam, K.H.
Deposit date:2014-06-30
Release date:2014-08-27
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.664 Å)
Cite:Structures of CRISPR Cas3 offer mechanistic insights into Cascade-activated DNA unwinding and degradation.
Nat.Struct.Mol.Biol., 21, 2014
8J4T
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BU of 8j4t by Molmil
GajA-GajB complex
Descriptor: Endonuclease GajA, Gabija protein GajB
Authors:Wei, T, Ma, J, Huo, Y.
Deposit date:2023-04-20
Release date:2024-02-21
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural and biochemical insights into the mechanism of the Gabija bacterial immunity system.
Nat Commun, 15, 2024
3QQ2
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BU of 3qq2 by Molmil
Crystal Structure of the Beta Domain of the Bordetella Autotransporter Brka
Descriptor: BrkA autotransporter
Authors:Zhai, Y, Zhang, K, Huo, Y, Sun, F.
Deposit date:2011-02-14
Release date:2011-04-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3 Å)
Cite:Autotransporter passenger domain secretion requires a hydrophobic cavity at the extracellular entrance of the beta-domain pore
Biochem.J., 435, 2011
4FTH
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BU of 4fth by Molmil
Crystal Structure of NtrC4 DNA-binding domain bound to double-stranded DNA
Descriptor: 5'-D(*AP*CP*TP*TP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*AP*AP*AP*TP*GP*CP*AP*T)-3', 5'-D(P*GP*AP*TP*GP*CP*AP*TP*TP*TP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*AP*A)-3', Transcriptional regulator (NtrC family)
Authors:Vidangos, N.K, Heideker, J, Lyubimov, A.Y, Lamers, M, Huo, Y, Pelton, J.G, Ton, J, Gralla, J.D, Kuriyan, J, Berger, J.M, Wemmer, D.E.
Deposit date:2012-06-27
Release date:2012-08-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.004 Å)
Cite:DNA Recognition by a sigma (54) Transcriptional Activator from Aquifex aeolicus.
J.Mol.Biol., 426, 2014
5ZB2
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BU of 5zb2 by Molmil
Crystal structure of Rad7 and Elc1 complex in yeast
Descriptor: 2-(2-METHOXYETHOXY)ETHANOL, 3,6,9,12,15,18,21,24,27,30,33,36,39,42,45,48,51,54,57-nonadecaoxanonapentacontane-1,59-diol, 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, ...
Authors:Jiang, T, Liu, L, Huo, Y.
Deposit date:2018-02-09
Release date:2019-02-27
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.30000544 Å)
Cite:Crystal structure of the yeast Rad7-Elc1 complex and assembly of the Rad7-Rad16-Elc1-Cul3 complex.
DNA Repair (Amst.), 77, 2019
6KBD
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BU of 6kbd by Molmil
fused To-MtbCsm1 with 2dATP
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CRISPR system single-strand-specific deoxyribonuclease Cas10/Csm1 (subtype III-A),CRISPR system single-strand-specific deoxyribonuclease Cas10/Csm1 (subtype III-A), MAGNESIUM ION
Authors:Li, T, Huo, Y, Jiang, T.
Deposit date:2019-06-24
Release date:2020-06-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3 Å)
Cite:Mycobacterium tuberculosis CRISPR/Cas system Csm1 holds clues to the evolutionary relationship between DNA polymerase and cyclase activity.
Int.J.Biol.Macromol., 170, 2020
6KC0
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BU of 6kc0 by Molmil
fused To-MtbCsm1 with 2ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CRISPR system single-strand-specific deoxyribonuclease Cas10/Csm1 (subtype III-A),CRISPR system single-strand-specific deoxyribonuclease Cas10/Csm1 (subtype III-A), MAGNESIUM ION
Authors:Li, T, Huo, Y, Jiang, T.
Deposit date:2019-06-26
Release date:2020-07-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.295 Å)
Cite:Mycobacterium tuberculosis CRISPR/Cas system Csm1 holds clues to the evolutionary relationship between DNA polymerase and cyclase activity.
Int.J.Biol.Macromol., 170, 2020
7V3V
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BU of 7v3v by Molmil
Cryo-EM structure of MCM double hexamer bound with DDK in State I
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Cell division control protein 7, DDK kinase regulatory subunit DBF4, ...
Authors:Cheng, J, Li, N, Huo, Y, Dang, S, Tye, B, Gao, N, Zhai, Y.
Deposit date:2021-08-11
Release date:2022-04-13
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural Insight into the MCM double hexamer activation by Dbf4-Cdc7 kinase.
Nat Commun, 13, 2022
7V3U
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BU of 7v3u by Molmil
Cryo-EM structure of MCM double hexamer with structured Mcm4-NSD
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA replication licensing factor MCM2, DNA replication licensing factor MCM3, ...
Authors:Cheng, J, Li, N, Huo, Y, Dang, S, Tye, B, Gao, N, Zhai, Y.
Deposit date:2021-08-11
Release date:2022-04-13
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural Insight into the MCM double hexamer activation by Dbf4-Cdc7 kinase.
Nat Commun, 13, 2022
7XWY
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BU of 7xwy by Molmil
Crystal structure of spFft3 N-terminal truncation
Descriptor: ATP-dependent helicase fft3, SULFATE ION
Authors:Zhang, N, Jiang, T, Huo, Y.
Deposit date:2022-05-27
Release date:2023-12-06
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structure of spFft3 N-terminal truncation
To Be Published
7XC6
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BU of 7xc6 by Molmil
Photobacterium phosphoreum fatty acid reductase complex LuxC-LuxE
Descriptor: Long-chain acyl-protein thioester reductase, LuxE
Authors:Tian, Q, Huo, Y, Wang, L.
Deposit date:2022-03-23
Release date:2022-04-20
Last modified:2022-08-10
Method:ELECTRON MICROSCOPY (2.79 Å)
Cite:Cryo-EM structure of the fatty acid reductase LuxC-LuxE complex provides insights into bacterial bioluminescence.
J.Biol.Chem., 298, 2022
8W7M
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BU of 8w7m by Molmil
Yeast replisome in state V
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Cell division control protein 45, DNA (71-mer), ...
Authors:Dang, S, Zhai, Y, Feng, J, Yu, D, Xu, Z.
Deposit date:2023-08-30
Release date:2023-12-06
Method:ELECTRON MICROSCOPY (4.12 Å)
Cite:Synergism between CMG helicase and leading strand DNA polymerase at replication fork.
Nat Commun, 14, 2023
8W7S
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BU of 8w7s by Molmil
Yeast replisome in state IV
Descriptor: Cell division control protein 45, DNA (71-mer), DNA polymerase alpha-binding protein, ...
Authors:Dang, S, Zhai, Y, Feng, J, Yu, D.
Deposit date:2023-08-31
Release date:2023-12-20
Method:ELECTRON MICROSCOPY (7.39 Å)
Cite:Synergism between CMG helicase and leading strand DNA polymerase at replication fork.
Nat Commun, 14, 2023
7CPU
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BU of 7cpu by Molmil
Cryo-EM structure of 80S ribosome from mouse kidney
Descriptor: 40S ribosomal protein S10, 40S ribosomal protein S11, 40S ribosomal protein S13, ...
Authors:Huo, Y.G, He, X, Jiang, T, Qin, Y, Guo, X.J, Sha, J.H.
Deposit date:2020-08-08
Release date:2022-02-02
Last modified:2023-01-11
Method:ELECTRON MICROSCOPY (2.82 Å)
Cite:A male germ-cell-specific ribosome controls male fertility.
Nature, 612, 2022
7CPV
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BU of 7cpv by Molmil
Cryo-EM structure of 80S ribosome from mouse testis
Descriptor: 40S ribosomal protein S10, 40S ribosomal protein S11, 40S ribosomal protein S13, ...
Authors:Huo, Y.G, He, X, Jiang, T, Qin, Y, Guo, X.J, Sha, J.H.
Deposit date:2020-08-08
Release date:2022-02-02
Last modified:2023-01-11
Method:ELECTRON MICROSCOPY (3.03 Å)
Cite:A male germ-cell-specific ribosome controls male fertility.
Nature, 612, 2022

 

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