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7VEP
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BU of 7vep by Molmil
Crystal structure and biophysical characterization of TPR domain of EccA5 from ESX-5 pathway of Mycobacterium tuberculosis H37RVR
Descriptor: ESX-5 secretion system protein EccA5, GLYCEROL, SULFATE ION
Authors:Ramachandran, R, Sharma, V.K, Vishwakarma, J.
Deposit date:2021-09-09
Release date:2022-09-14
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structure and biophysical characterization of TPR domain of EccA5 from ESX-5 pathway of Mycobacterium tuberculosis H37RVR
To Be Published
7FGQ
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BU of 7fgq by Molmil
Crystal structure of Thymidylate kinase with TMP and its low-resolution (SAXS) solution structure from Brugia malayi
Descriptor: THYMIDINE-5'-PHOSPHATE, dTMP kinase
Authors:Ramachandran, R, Vishwakarma, J, Sharma, V.K.
Deposit date:2021-07-27
Release date:2022-07-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Crystal structure of Thymidylate kinase with TMP and its low-resolution (SAXS) solution structure from Brugia malayi
To Be Published
6KDU
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BU of 6kdu by Molmil
Structural basis for domain rotation during adenylation of active site K123 and fragment library screening against NAD+ -dependent DNA ligase from Mycobacterium tuberculosis
Descriptor: ADENOSINE MONOPHOSPHATE, BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, DNA ligase A, ...
Authors:Ramachandran, R, Shukla, A, Afsar, M.
Deposit date:2019-07-02
Release date:2020-07-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Salt bridges at the subdomain interfaces of the adenylation domain and active-site residues of Mycobacterium tuberculosis NAD + -dependent DNA ligase A (MtbLigA) are important for the initial steps of nick-sealing activity.
Acta Crystallogr D Struct Biol, 77, 2021
6KJM
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BU of 6kjm by Molmil
Structural basis for domain rotation during adenylation of active site K123 and fragment library screening against NAD+ -dependent DNA ligase from Mycobacterium tuberculosis
Descriptor: ADENOSINE MONOPHOSPHATE, BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, DNA ligase A, ...
Authors:Ramachandran, R, Shukla, A, Afsar, M.
Deposit date:2019-07-22
Release date:2020-07-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure based identification of first-in-class fragment inhibitors that target the NMN pocket of M. tuberculosis NAD + -dependent DNA ligase A.
J.Struct.Biol., 213, 2021
6KKV
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BU of 6kkv by Molmil
Structural basis for domain rotation during adenylation of active site K123 and fragment library screening against NAD+ -dependent DNA ligase from Mycobacterium tuberculosis
Descriptor: DNA ligase A, N-[(4-methylphenyl)methyl]-1H-pyrrole-2-carboxamide, SULFATE ION
Authors:Ramachandran, R, Shukla, A, Afsar, M.
Deposit date:2019-07-27
Release date:2020-07-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Structure based identification of first-in-class fragment inhibitors that target the NMN pocket of M. tuberculosis NAD + -dependent DNA ligase A.
J.Struct.Biol., 213, 2021
6KRH
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BU of 6krh by Molmil
Structural basis for domain rotation during adenylation of active site K123 and fragment library screening against NAD+ -dependent DNA ligase from Mycobacterium tuberculosis
Descriptor: ADENOSINE MONOPHOSPHATE, BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, DNA ligase A, ...
Authors:Ramachandran, R, Shukla, A, Afsar, M.
Deposit date:2019-08-21
Release date:2020-08-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Salt bridges at the subdomain interfaces of the adenylation domain and active-site residues of Mycobacterium tuberculosis NAD + -dependent DNA ligase A (MtbLigA) are important for the initial steps of nick-sealing activity.
Acta Crystallogr D Struct Biol, 77, 2021
6KSC
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BU of 6ksc by Molmil
Structural basis for domain rotation during adenylation of active site K123 and fragment library screening against NAD+ -dependent DNA ligase from Mycobacterium tuberculosis
Descriptor: ADENOSINE MONOPHOSPHATE, DNA ligase A, SULFATE ION
Authors:Ramachandran, R, Shukla, A, Afsar, M.
Deposit date:2019-08-23
Release date:2020-08-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Salt bridges at the subdomain interfaces of the adenylation domain and active-site residues of Mycobacterium tuberculosis NAD + -dependent DNA ligase A (MtbLigA) are important for the initial steps of nick-sealing activity.
Acta Crystallogr D Struct Biol, 77, 2021
6KSD
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BU of 6ksd by Molmil
Structural basis for domain rotation during adenylation of active site K123 and fragment library screening against NAD+ -dependent DNA ligase from Mycobacterium tuberculosis
Descriptor: BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, DNA ligase A, SULFATE ION
Authors:Ramachandran, R, Shukla, A, Afsar, M.
Deposit date:2019-08-23
Release date:2020-08-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Salt bridges at the subdomain interfaces of the adenylation domain and active-site residues of Mycobacterium tuberculosis NAD + -dependent DNA ligase A (MtbLigA) are important for the initial steps of nick-sealing activity.
Acta Crystallogr D Struct Biol, 77, 2021
6LW8
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BU of 6lw8 by Molmil
Structural basis for domain rotation during adenylation of active site K123 and fragment library screening against NAD+ -dependent DNA ligase from Mycobacterium tuberculosis
Descriptor: (4R)-4-(4-fluorophenyl)-4,5,6,7-tetrahydro-1H-imidazo[4,5-c]pyridine, DNA ligase A, GLYCEROL, ...
Authors:Ramachandran, R, Afsar, M, Shukla, A.
Deposit date:2020-02-07
Release date:2021-02-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.401 Å)
Cite:Structure based identification of first-in-class fragment inhibitors that target the NMN pocket of M. tuberculosis NAD + -dependent DNA ligase A.
J.Struct.Biol., 213, 2021
5T41
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BU of 5t41 by Molmil
Crystal structure of Mycobacterium avium SerB2 mutant S275A/R279A at pH 6.6 with ethylene glycol bound at ACT- I domain
Descriptor: 1,2-ETHANEDIOL, MAGNESIUM ION, Phosphoserine phosphatase
Authors:Shree, S, Dubey, S, Ramachandran, R.
Deposit date:2016-08-28
Release date:2016-11-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.149 Å)
Cite:Crystal Structure of Mycobacterium avium SerB2 (MAV_3907) at pH 6.6
To be published
5IS2
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BU of 5is2 by Molmil
Crystal structure of Mycobacterium avium SerB2 at pH 6.6
Descriptor: MAGNESIUM ION, Phosphoserine phosphatase
Authors:Shree, S, Ramachandran, R.
Deposit date:2016-03-15
Release date:2016-04-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.881 Å)
Cite:Crystal Structure of Mycobacterium avium SerB2 (MAV_3907) at pH 6.6
To be published
5IT4
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BU of 5it4 by Molmil
Crystal structure of Mycobacterium avium SerB2 mutant D343N
Descriptor: MAGNESIUM ION, Phosphoserine phosphatase
Authors:Shree, S, Ramachandran, R.
Deposit date:2016-03-16
Release date:2016-04-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.102 Å)
Cite:Crystal Structure of Mycobacterium avium SerB2 mutant D343N (MAV_3907) at pH 6.6
To be published
5IT0
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BU of 5it0 by Molmil
Crystal structure of Mycobacterium avium SerB2 mutant D343N/D347N
Descriptor: MAGNESIUM ION, Phosphoserine phosphatase
Authors:Shree, S, Ramachandran, R.
Deposit date:2016-03-16
Release date:2016-04-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.968 Å)
Cite:Crystal Structure of Mycobacterium avium SerB2 (MAV_3907) active site mutant D343N/D347N
To be published
5JLR
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BU of 5jlr by Molmil
Crystal structure of Mycobacterium avium SerB2 with serine present at slightly different position near ACT domain
Descriptor: 1,2-ETHANEDIOL, 2-(2-METHOXYETHOXY)ETHANOL, MAGNESIUM ION, ...
Authors:Shree, S, Agrawal, A, Dubey, S, Ramachandran, R.
Deposit date:2016-04-27
Release date:2017-05-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.261 Å)
Cite:Crystal structure of Mycobacterium avium SerB2 with serine present at slightly different position near ACT domain
To be published
5JJB
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BU of 5jjb by Molmil
Crystal structure of Mycobacterium avium SerB2 mutant D343G
Descriptor: 1,2-ETHANEDIOL, MAGNESIUM ION, Phosphoserine phosphatase
Authors:Shree, S, Dubey, S, Ramachandran, R.
Deposit date:2016-04-23
Release date:2016-05-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.305 Å)
Cite:Crystal Structure of Mycobacterium avium SerB2 (MAV_3907) at pH 6.6
To be published
5JMA
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BU of 5jma by Molmil
Crystal structure of Mycobacterium avium SerB2 in complex with serine at catalytic (PSP) domain
Descriptor: 1,2-ETHANEDIOL, MAGNESIUM ION, Phosphoserine phosphatase, ...
Authors:Shree, S, Dubey, S, Agrawal, A, Ramachandran, R.
Deposit date:2016-04-28
Release date:2017-05-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Crystal structure of Mycobacterium avium SerB2 in complex with serine at catalytic (PSP) domain
To be published
5JLP
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BU of 5jlp by Molmil
Crystal structure of Mycobacterium avium SerB2 in complex with serine at ACT domain
Descriptor: 1,2-ETHANEDIOL, 2-(2-METHOXYETHOXY)ETHANOL, MAGNESIUM ION, ...
Authors:Shree, S, Ramachandran, R.
Deposit date:2016-04-27
Release date:2017-05-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.495 Å)
Cite:Crystal structure of Mycobacterium avium SerB2 in complex with serine at ACT domain
To be published
1Z30
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BU of 1z30 by Molmil
NMR structure of the apical part of stemloop D from cloverleaf 1 of bovine enterovirus 1 RNA
Descriptor: 5'-R(*GP*GP*CP*GP*UP*UP*CP*GP*UP*UP*AP*GP*AP*AP*CP*GP*UP*C)-3'
Authors:Ihle, Y, Ohlenschlager, O, Duchardt, E, Ramachandran, R, Gorlach, M.
Deposit date:2005-03-10
Release date:2005-04-26
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:A novel cGUUAg tetraloop structure with a conserved yYNMGg-type backbone conformation from cloverleaf 1 of bovine enterovirus 1 RNA
Nucleic Acids Res., 33, 2005
3RB9
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BU of 3rb9 by Molmil
Crystal structure of the M. tuberculosis beta clamp
Descriptor: DNA polymerase III subunit beta
Authors:Kukshal, V, Ramachandran, R.
Deposit date:2011-03-29
Release date:2012-04-04
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:M. tuberculosis Sliding beta-Clamp Does Not Interact Directly with the NAD(+)-Dependent DNA Ligase
Plos One, 7, 2012
3S5C
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BU of 3s5c by Molmil
Crystal Structure of a Hexachlorocyclohexane dehydrochlorinase (LinA) Type2
Descriptor: LinA
Authors:Kukshal, V, Macwan, A.S, Kumar, A, Ramachandran, R.
Deposit date:2011-05-23
Release date:2012-05-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Crystal structure of the hexachlorocyclohexane dehydrochlorinase (LinA-type2): mutational analysis, thermostability and enantioselectivity
Plos One, 7, 2012
4PCQ
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BU of 4pcq by Molmil
Crystal Structure of MtbAldR (Rv2779c)
Descriptor: Possible transcriptional regulatory protein (Probably Lrp/AsnC-family)
Authors:Dey, A, Ramachandran, R.
Deposit date:2014-04-16
Release date:2015-05-06
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Crystal structure of MtbAldR
To be published
2VC0
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BU of 2vc0 by Molmil
Feast or famine regulatory protein (Rv3291c)from M. tuberculosis complexed with L-Leucine
Descriptor: LEUCINE, TRANSCRIPTIONAL REGULATORY PROTEIN
Authors:Shrivastava, T, Ramachandran, R.
Deposit date:2007-09-18
Release date:2007-11-06
Last modified:2019-10-09
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mechanistic insights from the crystal structures of a feast/famine regulatory protein from Mycobacterium tuberculosis H37Rv.
Nucleic Acids Res., 35, 2007
2VBY
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BU of 2vby by Molmil
Feast or famine regulatory protein (Rv3291c)from M. tuberculosis complexed with L-Tyrosine
Descriptor: TRANSCRIPTIONAL REGULATORY PROTEIN, TYROSINE
Authors:Shrivastava, T, Ramachandran, R.
Deposit date:2007-09-18
Release date:2007-11-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Mechanistic Insights from the Crystal Structures of a Feast/Famine Regulatory Protein from Mycobacterium Tuberculosis H37Rv.
Nucleic Acids Res., 35, 2007
2VBX
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BU of 2vbx by Molmil
Feast or famine regulatory protein (Rv3291c)from M. tuberculosis complexed with L-Phenylalanine
Descriptor: HISTIDINE, TRANSCRIPTIONAL REGULATORY PROTEIN
Authors:Shrivastava, T, Ramachandran, R.
Deposit date:2007-09-18
Release date:2007-11-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Mechanistic Insights from the Crystal Structures of a Feast/Famine Regulatory Protein from Mycobacterium Tuberculosis H37Rv.
Nucleic Acids Res., 35, 2007
2VBW
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BU of 2vbw by Molmil
Feast or famine regulatory protein (Rv3291c)from M. tuberculosis complexed with L-Phenylalanine
Descriptor: PHENYLALANINE, TRANSCRIPTIONAL REGULATORY PROTEIN
Authors:Shrivastava, T, Ramachandran, R.
Deposit date:2007-09-18
Release date:2007-11-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Mechanistic Insights from the Crystal Structures of a Feast/Famine Regulatory Protein from Mycobacterium Tuberculosis H37Rv.
Nucleic Acids Res., 35, 2007

 

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