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2EXS
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BU of 2exs by Molmil
TRAP3 (engineered TRAP)
Descriptor: TRYPTOPHAN, Transcription attenuation protein mtrB
Authors:Heddle, J.G, Yokoyama, T, Yamashita, I, Park, S.Y, Tame, J.R.H.
Deposit date:2005-11-08
Release date:2006-08-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Rounding up: Engineering 12-Membered Rings from the Cyclic 11-Mer TRAP
Structure, 14, 2006
2EXT
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BU of 2ext by Molmil
TRAP4 (engineered TRAP)
Descriptor: TRYPTOPHAN, Transcription attenuation protein mtrB
Authors:Heddle, J.G, Yokoyama, T, Yamashita, I, Park, S.Y, Tame, J.R.H.
Deposit date:2005-11-08
Release date:2006-08-01
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Rounding up: Engineering 12-Membered Rings from the Cyclic 11-Mer TRAP
Structure, 14, 2006
3AQD
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BU of 3aqd by Molmil
Unliganded TRAP
Descriptor: Transcription attenuation protein mtrB
Authors:Malay, A.A.D, Watanabe, M, Heddle, J.G, Tame, J.R.H.
Deposit date:2010-10-29
Release date:2010-12-29
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Allostery in TRAP
To be Published
6RVV
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BU of 6rvv by Molmil
Structure of left-handed protein cage consisting of 24 eleven-membered ring proteins held together by gold (I) bridges.
Descriptor: GOLD ION, Transcription attenuation protein MtrB
Authors:Malay, A.D, Miyazaki, N, Biela, A.P, Iwasaki, K, Heddle, J.G.
Deposit date:2019-06-03
Release date:2019-06-12
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:An ultra-stable gold-coordinated protein cage displaying reversible assembly.
Nature, 569, 2019
6RVW
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BU of 6rvw by Molmil
Structure of right-handed protein cage consisting of 24 eleven-membered ring proteins held together by gold (I) bridges.
Descriptor: GOLD ION, Transcription attenuation protein MtrB
Authors:Malay, A.D, Miyazaki, N, Biela, A.P, Iwasaki, K, Heddle, J.G.
Deposit date:2019-06-03
Release date:2019-06-12
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:An ultra-stable gold-coordinated protein cage displaying reversible assembly.
Nature, 569, 2019
2NOO
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BU of 2noo by Molmil
Crystal Structure of Mutant NikA
Descriptor: IODIDE ION, NICKEL (II) ION, Nickel-binding periplasmic protein
Authors:Addy, C, Ohara, M, Kawai, F, Kidera, A, Ikeguchi, M, Fuchigami, S, Osawa, M, Shimada, I, Park, S.Y, Tame, J.R.H, Heddle, J.G.
Deposit date:2006-10-26
Release date:2007-01-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Nickel binding to NikA: an additional binding site reconciles spectroscopy, calorimetry and crystallography.
Acta Crystallogr.,Sect.D, 63, 2007
1WXR
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BU of 1wxr by Molmil
Crystal structure of Heme Binding protein, an autotransporter hemoglobine protease from pathogenic Escherichia coli
Descriptor: haemoglobin protease
Authors:Otto, B.R, Sijbrandi, R, Luirink, J, Oudega, B, Heddle, J.G, Mizutani, K, Park, S.-Y, Tame, J.R.H.
Deposit date:2005-01-31
Release date:2005-03-01
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of heme binding protein, an autotransporter hemoglobin protease from pathogenic escherichia coli
J.Biol.Chem., 280, 2005
2ZA6
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BU of 2za6 by Molmil
recombinant horse L-chain apoferritin
Descriptor: CADMIUM ION, Ferritin light chain
Authors:Yamashita, I, Mishima, Y, Park, S.-Y, Heddle, J.G, Tame, J.R.H.
Deposit date:2007-10-02
Release date:2008-01-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Effect of N-terminal Residues on the Structural Stability of Recombinant Horse L-chain Apoferritin in an Acidic Environment
J.BIOCHEM.(TOKYO), 142, 2007
2ZA7
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BU of 2za7 by Molmil
recombinant horse L-chain apoferritin N-terminal deletion mutant (residues 1-4)
Descriptor: Ferritin light chain
Authors:Yamashita, I, Mishima, Y, Park, S.-Y, Heddle, J.G, Tame, J.R.H.
Deposit date:2007-10-02
Release date:2008-01-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Effect of N-terminal Residues on the Structural Stability of Recombinant Horse L-chain Apoferritin in an Acidic Environment
J.BIOCHEM.(TOKYO), 142, 2007
2ZA8
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BU of 2za8 by Molmil
recombinant horse L-chain apoferritin N-terminal deletion mutant (residues 1-8)
Descriptor: CADMIUM ION, Ferritin light chain
Authors:Yamashita, I, Mishima, Y, Park, S.-Y, Heddle, J.G, Tame, J.R.H.
Deposit date:2007-10-02
Release date:2008-01-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Effect of N-terminal Residues on the Structural Stability of Recombinant Horse L-chain Apoferritin in an Acidic Environment
J.BIOCHEM.(TOKYO), 142, 2007
2ZD0
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BU of 2zd0 by Molmil
Crystal structures and thermostability of mutant TRAP3 A5 (ENGINEERED TRAP)
Descriptor: TRYPTOPHAN, Transcription attenuation protein mtrB
Authors:Watanabe, M, Mishima, Y, Yamashita, I, Park, S.Y, Tame, J.R.H, Heddle, J.G.
Deposit date:2007-11-15
Release date:2008-04-29
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Intersubunit linker length as a modifier of protein stability: crystal structures and thermostability of mutant TRAP.
Protein Sci., 17, 2008
2ZP9
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BU of 2zp9 by Molmil
The Nature of the TRAP:Anti-TRAP complex
Descriptor: TRYPTOPHAN, Transcription attenuation protein mtrB, Tryptophan RNA-binding attenuator protein-inhibitory protein, ...
Authors:Watanabe, M, Heddle, J.G, Unzai, S, Akashi, S, Park, S.Y, Tame, J.R.H.
Deposit date:2008-07-08
Release date:2009-02-03
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The nature of the TRAP-Anti-TRAP complex.
Proc.Natl.Acad.Sci.USA, 106, 2009
2ZP8
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BU of 2zp8 by Molmil
The Nature of the TRAP:Anti-TRAP complex
Descriptor: TRYPTOPHAN, Transcription attenuation protein mtrB, Tryptophan RNA-binding attenuator protein-inhibitory protein, ...
Authors:Watanabe, M, Heddle, J.G, Unzai, S, Akashi, S, Park, S.Y, Tame, J.R.H.
Deposit date:2008-07-08
Release date:2009-02-03
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The nature of the TRAP-Anti-TRAP complex.
Proc.Natl.Acad.Sci.USA, 106, 2009
2ZCZ
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BU of 2zcz by Molmil
Crystal structures and thermostability of mutant TRAP3 A7 (ENGINEERED TRAP)
Descriptor: TRYPTOPHAN, Transcription attenuation protein mtrB
Authors:Watanabe, M, Mishima, Y, Yamashita, I, Park, S.Y, Tame, J.R.H, Heddle, J.G.
Deposit date:2007-11-15
Release date:2008-04-29
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Intersubunit linker length as a modifier of protein stability: crystal structures and thermostability of mutant TRAP.
Protein Sci., 17, 2008
7Z9G
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BU of 7z9g by Molmil
E.coli gyrase holocomplex with 217 bp DNA and Albi-2
Descriptor: 4-[[3-(2-azanylethoxy)-2-oxidanyl-4-[[5-[[(2~{S})-2-[[4-[(6-oxidanylnaphthalen-2-yl)carbonylamino]phenyl]carbonylamino]-3-(1~{H}-1,2,3-triazol-4-yl)propanoyl]amino]pyridin-2-yl]carbonylamino]phenyl]carbonylamino]-3-methoxy-2-oxidanyl-benzoic acid, DNA (5'-D(*AP*AP*TP*CP*AP*CP*CP*CP*GP*CP*AP*CP*AP*GP*AP*TP*TP*T)-3'), DNA (5'-D(*GP*AP*TP*TP*TP*TP*AP*TP*GP*CP*CP*TP*GP*AP*TP*TP*CP*T)-3'), ...
Authors:Ghilarov, D, Heddle, J.G.H.
Deposit date:2022-03-21
Release date:2023-02-15
Last modified:2023-07-19
Method:ELECTRON MICROSCOPY (3.25 Å)
Cite:Molecular mechanism of topoisomerase poisoning by the peptide antibiotic albicidin.
Nat Catal, 6, 2023
7Z9M
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BU of 7z9m by Molmil
E.coli gyrase holocomplex with 217 bp DNA and Albi-1 (site AA)
Descriptor: 4-[[4-[[5-[[(2S)-2-[[5-[(4-cyanophenyl)carbonylamino]pyridin-2-yl]carbonylamino]-3-(1H-1,2,3-triazol-4-yl)propanoyl]amino]pyridin-2-yl]carbonylamino]-2-oxidanyl-3-propan-2-yloxy-phenyl]carbonylamino]benzoic acid, DNA (5'-D(*AP*AP*TP*CP*AP*CP*CP*CP*GP*CP*AP*CP*AP*GP*AP*TP*TP*T)-3'), DNA (5'-D(*GP*AP*TP*TP*TP*TP*AP*TP*GP*CP*CP*TP*GP*AP*TP*TP*CP*T)-3'), ...
Authors:Ghilarov, D, Heddle, J.G.H.
Deposit date:2022-03-21
Release date:2023-02-15
Last modified:2023-07-19
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Molecular mechanism of topoisomerase poisoning by the peptide antibiotic albicidin.
Nat Catal, 6, 2023
7Z9C
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BU of 7z9c by Molmil
E.coli gyrase holocomplex with 217 bp DNA and albicidin
Descriptor: DNA (5'-D(*AP*AP*TP*CP*AP*CP*CP*CP*GP*CP*AP*CP*AP*GP*AP*TP*TP*T)-3'), DNA (5'-D(*GP*AP*TP*TP*TP*TP*AP*TP*GP*CP*CP*TP*GP*AP*TP*TP*CP*T)-3'), DNA (5'-D(P*AP*AP*AP*TP*CP*TP*GP*TP*GP*CP*GP*GP*GP*T)-3'), ...
Authors:Ghilarov, D, Heddle, J.G.H, Suessmuth, R.
Deposit date:2022-03-21
Release date:2023-02-15
Last modified:2023-07-19
Method:ELECTRON MICROSCOPY (3.06 Å)
Cite:Molecular mechanism of topoisomerase poisoning by the peptide antibiotic albicidin.
Nat Catal, 6, 2023
7Z9K
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BU of 7z9k by Molmil
E.coli gyrase holocomplex with 217 bp DNA and Albi-1 (site TG)
Descriptor: 4-[[4-[[5-[[(2S)-2-[[5-[(4-cyanophenyl)carbonylamino]pyridin-2-yl]carbonylamino]-3-(1H-1,2,3-triazol-4-yl)propanoyl]amino]pyridin-2-yl]carbonylamino]-2-oxidanyl-3-propan-2-yloxy-phenyl]carbonylamino]benzoic acid, DNA (5'-D(*AP*AP*TP*CP*AP*CP*CP*CP*GP*CP*AP*CP*AP*GP*AP*TP*TP*T)-3'), DNA (5'-D(*GP*AP*TP*TP*TP*TP*AP*TP*GP*CP*CP*TP*GP*AP*TP*TP*CP*T)-3'), ...
Authors:Ghilarov, D, Heddle, J.G.H.
Deposit date:2022-03-21
Release date:2023-03-08
Last modified:2023-07-19
Method:ELECTRON MICROSCOPY (3.25 Å)
Cite:Molecular mechanism of topoisomerase poisoning by the peptide antibiotic albicidin.
Nat Catal, 6, 2023
7P34
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BU of 7p34 by Molmil
Cryo-EM structure of the proton-dependent antibacterial peptide transporter SbmA-FabS11-1 in nanodiscs
Descriptor: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, Peptide antibiotic transporter SbmA
Authors:Ghilarov, D, Beis, K.
Deposit date:2021-07-07
Release date:2021-09-15
Last modified:2021-09-29
Method:ELECTRON MICROSCOPY (3.59 Å)
Cite:Molecular mechanism of SbmA, a promiscuous transporter exploited by antimicrobial peptides.
Sci Adv, 7, 2021
7R3W
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BU of 7r3w by Molmil
Crystal structure of the albicidin resistance protein STM3175 from Salmonella typhimurium
Descriptor: Putative bacterial regulatory helix-turn-helix protein
Authors:Dimos, N, Kosol, S, Suessmuth, R, Loll, B.
Deposit date:2022-02-08
Release date:2022-09-28
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Gene amplifications cause high-level resistance against albicidin in gram-negative bacteria.
Plos Biol., 21, 2023
6TXH
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BU of 6txh by Molmil
Crystal structure of thermotoga maritima Ferritin in apo form
Descriptor: EICOSANE, Ferritin, GLYCEROL, ...
Authors:Wilk, P, Grudnik, P, Kumar, M, Heddle, J, Chakraborti, S.
Deposit date:2020-01-14
Release date:2021-07-28
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.198 Å)
Cite:A single residue can modulate nanocage assembly in salt dependent ferritin.
Nanoscale, 13, 2021
6TXL
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BU of 6txl by Molmil
Crystal structure of thermotoga maritima E65Q Ferritin
Descriptor: EICOSANE, FE (III) ION, Ferritin, ...
Authors:Wilk, P, Grudnik, P, Kumar, M, Heddle, J, Chakraborti, S.
Deposit date:2020-01-14
Release date:2021-07-28
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.099 Å)
Cite:A single residue can modulate nanocage assembly in salt dependent ferritin.
Nanoscale, 13, 2021
6TXN
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BU of 6txn by Molmil
Crystal structure of thermotoga maritima Ferritin in apo form
Descriptor: EICOSANE, Ferritin, GLYCEROL, ...
Authors:Wilk, P, Grudnik, P, Kumar, M, Heddle, J, Chakraborti, S.
Deposit date:2020-01-14
Release date:2021-07-28
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:A single residue can modulate nanocage assembly in salt dependent ferritin.
Nanoscale, 13, 2021
6TXM
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BU of 6txm by Molmil
Crystal structure of thermotoga maritima E65R Ferritin
Descriptor: EICOSANE, Ferritin, GLYCEROL, ...
Authors:Wilk, P, Grudnik, P, Kumar, M, Heddle, J, Chakraborti, S.
Deposit date:2020-01-14
Release date:2021-07-28
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.198 Å)
Cite:A single residue can modulate nanocage assembly in salt dependent ferritin.
Nanoscale, 13, 2021
6TXJ
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BU of 6txj by Molmil
Crystal structure of thermotoga maritima A42V E65D Ferritin
Descriptor: EICOSANE, FE (III) ION, Ferritin, ...
Authors:Wilk, P, Grudnik, P, Kumar, M, Heddle, J, Chakraborti, S, Biela, A.P.
Deposit date:2020-01-14
Release date:2021-07-28
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:A single residue can modulate nanocage assembly in salt dependent ferritin.
Nanoscale, 13, 2021

 

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