The PDBj Mine2 relational database (RDB) now integrates the summary data of SIFTS developed by PDBe and UniProt. By combining PDBj Mine2 ...

... Search for journal year ['2001']:] SELECT pdbid FROM brief_summary b WHERE '{2001}' && citation_year [Search for ... journal volume ['555']:] SELECT pdbid FROM brief_summary b WHERE '{"555"}' && citation_volume [Search for exprimental ...

... _species LIKE '%Glycine max%' - To use brief_summary table is convenient because the category that biological resource ... in each PDB entry. Tags - Use the digest table "brief_summary" - Entity - Biological resource - Extract information (SELECT) - ...

... The query fetches a selection of the columns from the brief_summary table (pdbid, struct_title, deposit_author, citation_title_pri ... "q=select%20distinct%20on%20(chem_comp.pdbid)%20brief_summary.pdbid%2C%20struct_title%2C%20deposit_author%2C%20citation_title ...

... - 5-4) How do I link to a Structure Summary page of PDBj Mine for a PDB ID? - 5 ... ] 5-4) How do I link to a Structure Summary page of PDBj Mine for a PDB ID? A) ... The correct syntax for linking to a Structure Summary page for a structure by PDB ID on the ...

... entry (such as this: mine:1GOF ). For the details about the Summary Page, refer to About PDBj Mine . [Search entries by keywords] ... for the keyword. Click the PDB ID, you will find a summary page for the entry. [Data Deposition] Please refer to Data ...

... For a description of these fields, please see the brief_summary table description. Then, to search for a number of uniprot ... your convenience, the brief_summary table and some helper functions are defined. The brief_summary table compiles the information used ...

... without sharing passwords. Using ORCiD with OneDep returns a summary table of all entries in which the ORCiD has been ... provided for the contact author. wwPDB has improved the summary table with: - Two new columns display the experimental method ...

... *AC* When entering a complete PDB ID, the summary page of the entry will be displayed. To search ... a keywords search. e.g.) entering1smdinto 'PDB ID' --The summary page of1smdstructure is displayed entering1smdinto 'Keywords' --The list of ...

... (s)mol) - Database information (lists related entries in other databases) Tabs Summary tab The summary tab lists core information about a given entry. Structural details tab ...

... XML formatted validation files. The mmCIF categories _pdbx_vrpt_summary_entity_fit_to_map and _pdbx_vrpt_model_instance_ ... and atom-inclusion values. The existing items, _pdbx_vrpt_summary_entity_geometry.average_residue_inclusion and _pdbx_vrpt_model_ ...

... visualization of cryo-EM structure data" - presentation summary（pdf 1.8MB） PDBj luncheon seminar at the ... Institute for Protein Research (IPR), Osaka University) presentation summary (PDF) The 11th Japan-Korea-China Bioinformatics Training ...

... Globe is a graphical interface to the PDBj and other services. - Summary - What it is - Prerequisite - How to use - Caveats - ... sea and lands URL: https://pdbj.org//globe/globe.cgi [Summary] 1. Each dot on the globe represents a representative of ...

... to an alignment page with structure superposition. motif The link to the summary page of the corresponding structural motif. The structural motifs are those described ...

... ID, and then selecting FASTA at the upper-right part of the summary page. The FASTA sequence should look like: >sp|Q6Q899|DDX58_MOUSE Probable ...

... 1q7t. Clicking on the 2ixdA link, will send you to the Mine summary page: Going back one page, and clicking on the alignment link for ...

... model, the diffraction data and the fit between the two. Easily interpretable summary information that compares the quality of a model with that of other ...

PDBj starts a new service in xPSSS to display the Electron Density Map of each biological macromolecule, whose structure factor file has been deposited, through the Summary page or the Experimental Details page of xPSSS.

... rationale for model-vs-data restraint validation by the wwPDB, together with summary of validation tools and reports for NMR distance and dihedral restraints that ...

... into a single data file, which can be accessed from OneDep upload summary page. After submission, depositors can not roll back to the conventional formats ...

... coronavirus 3CL hydrolase (Mpro) and the SARS virus main protease (PDB 1q2w). Summary data about these closely-related PDB structures are available (CSV) to help ...

... PDBx/mmCIF reports are easier to interpret. They contain a high-level summary and offer easier access to residue-level information. Data are provided at ...

... rationale for model-vs-data restraint validation by the wwPDB, together with summary of validation tools and reports for NMR distance and dihedral restraints that ...

... provide access to the specific deposition. Using ORCiD with OneDep returns a summary table of the entries in which the ORCiD has been provided for ...

... come, first served) ahead at the reception counter on the day. - seminar summary（pdf 1.8MB） - program（pdf 3.8MB）