A new publication in Acta Cryst D announces the mandatory submission of PDBx/mmCIF to the PDB for crystallographic depositions. (wwPDB news)

... SYNTHASE L.M.MCDOWELL,B.POLIKS,D.R.STUDELSKA,R.D.O'CONNOR,D.D.BEUSEN, J.SCHAEFER DisplayDownload 1q0jROTATIONAL-ECHO ... PHOSPHATE SYNTHASE L.M.MCDOWELL,B.POLIKS,D.R.STUDELSKA,R.D.O'CONNOR,D.D.BEUSEN DisplayDownload 1q1xCORONAVIRUS MAIN PROTEINASE (3CLPRO) ...

... Osaka Univ.) - PRF branch office Kurisu, Genji, Ph.D. (Guest Researcher, Protein Research Foundation (PRF)) Isoyama, Masaharu ... (Protein Research Foundation (PRF)) - Kurisu, Genji, Ph.D. (Guest Researcher, Protein Research Foundation (PRF)) - Isoyama, ...

... sequence and structural information in protein functional mapping. Standley, D.M., Yamashita, R., Kinjo, A.R., Toh, H ... alignment package: sensitivity and selectivity in domain classification Standley, D.M., Toh, H., Nakamura, H. BMC Bioinformatics 8 ...

... Search for all entries containing polypeptide chains with both type D-form and L-form: - Search for all entries containing ... - Search for all entries with chain type [all no except polysaccharide(D)]: - Search for exptl/method, unit axes, unit angles, exptl ...

... H, Sekijima M, Kihara D, Khan O, Kotelnikov S, Ghani U, Padhorny D, Beglov D, Vajda S, Kozakov D, Negi SS, Ricciardelli T, ... Barradas-Bautista D, Cao Z, Chawla M, ...

... _iso_Wilson_estimate, Rmerge_F_obs, auth_validate, d_resolution_high, d_resolution_low, number_all, number_obs, observed_criterion_sigma ... id reflns_shell_pdbmlplus Rmerge_I_obs, auth_validate, d_res_high, d_res_low, meanI_over_sigI_obs, number_measured_ ...

... in the Protein Data Bank Chenghua Shao, Zukang Feng, John D Westbrook, Ezra Peisach, John Berrisford, Yasuyo Ikegawa, Genji ... : balancing sequence and structural information in protein functional mapping. Standley, D.M., Yamashita, R., Kinjo, A.R., Toh, H., ...

... or (Fo-Fc) maps (amplitude = m*Fobs-D*Fcalc, phase = phicalc). m and D are weighting factors, varying with reflections and containing information ... Fobs that were deposited and Fcalc, phicalc, m and D obtained from the refined model. The extent of the map ...

... composed of L-amino acids - Polypeptide(D)：polypeptide composed of D-amino acids - polydeoxyribonucleotide：DNA chain composed ... composed of ribonucleotid - polysaccharide(D)：polysaccharide composed of D-monosaccharides - polysaccharide(L)：polysaccharide ...

... on cryoEM data archiving and validation Gerard J. Kleywegt, Paul D. Adams, Sarah J. Butcher, Cathy Lawson, Alexis Rohou, ... , Scott M. Stagg, Zhe Wang, Rangana Warshamanage, John D. Westbrook, Martyn D. Winn, Jasmine Y. Young, Stephen K. Burley, Jeffrey ...

... HF DeLuca (2004) Molecular structure of the rat vitamin D receptor ligand binding domain complexed with 2-carbon-substituted vitamin D3 ... convened. J Trewhella, WA Hendrickson, M Sato, T Schwede, D Svergun, JA Tainer, J Westbrook, GJ Kleywegt, HM Berman. ...

... on cryoEM data archiving and validation Gerard J. Kleywegt, Paul D. Adams, Sarah J. Butcher, Cathy Lawson, Alexis Rohou, ... , Scott M. Stagg, Zhe Wang, Rangana Warshamanage, John D. Westbrook, Martyn D. Winn, Jasmine Y. Young, Stephen K. Burley, Jeffrey ...

... mmCIF Ecosystem: Foundational Semantic Tools for Structural Biology John D. Westbrook, Jasmine Y. Young, Chenghua Shao, Zukang ... , Vladimir Guranovic, Catherine L. Lawson, Brinda Vallat, Paul D. Adams, John M. Berrisford, Gerard Bricogne, Kay Diederichs, ...

... T. E., Cowieson, N., Crossett, B., Duff, A. P., Franke, D., Gabel, F., Gillilan, R. E., Graewert, M., Grishaev, A., Guss, ... ., Rajkovic, I., Rocco, M., Rosenberg, D. J., Ryan, T. M., Seifert, S., Sekiguchi, H., Svergun, D., Teixeira, S., Thureau, A., Weiss, ...

... process of PDBc joining the wwPDB has been submitted to Acta Cryst D (PDF, 3). PDBc has received training and support from the wwPDB ... Associate Member of the Worldwide Protein Data Bank (wwPDB) Partnership Acta Cryst. D, submitted (PDF) [ wwPDB News ]

... PDBML: The representation of archival macromolecular structure data in XML Westbrook, J.D., Ito, N., Nakamura, H., Henrick, K., Berman, H.M. ... of Japan is written in uppercase? A) PDBj ( P rotein D ata B ank J apan) maintains a centralized PDB archive of ...

... 2.pdbx_DOI PDB 1abc pdb_00001abc 10.2210/pdb1abc/pdb WWPDB D_1xxxxxxxxx ? ?

... a structural perspective. Annu Rev Biochem 74, 867-900. [3]Standley,D.M., Toh, H. and Nakamura, H. (2004) Detecting local ... maximizing number of equivalent residues. Proteins 57, 381-91. [4]Standley,D.M., Toh, H. and Nakamura, H. (2005) GASH: an ...

... of the International Union of Crystallography in Hyderabad, India John D. Westbrook Jr. (1957-2021), Research Professor at Rutgers University ... survived by his wife, Bonnie J. Wagner-Westbrook, Ed.D. and his devoted Mother-in-Law, Joan N. Wagner ...

... a structural perspective. Annu Rev Biochem 74, 867-900. 3. Standley, D.M., Toh, H. and Nakamura, H. (2004) Detecting local structural ... maximizing number of equivalent residues. Proteins 57, 381-91. 4. Standley, D.M., Toh, H. and Nakamura, H. (2005) GASH: an ...

... curve with unit amplitude at zero distance: (3) S_dcut = exp[ -(dk/d_cut)^2]. Note that the residue-based score does not represent a ...

... to UCSF chimera for interactive visualization of large molecular assemblies. Goddard, T.D., Huang, C.C., Ferrin, T.E. Structure 13: 473-482 (2005) [doi ...

... try). Cards Amino acids Alanine (Ala, A) Cysteine (Cys, C) Aspartate (Asp, D) Glutamate (Glu, E) Phenylalanine (Phe, F) Glycine (Gly, G) Histidine (His, H ...

... the peptide. Sprites Ribosome Alanine (Ala, A) Cysteine (Cys, C) Aspartate (Asp, D) Glutamate (Glu, E) Phenylalanine (Phe, F) Glycine (Gly, G) Histidine (His, H ...