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On 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
See this page for details. News, Aug 31, 2016 - Yorodumi Docs
2016-08-31 (last edited: 4 weeks ago)2016-08-31
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A paper regarding Molmil, a molecular viewer developed by PDBj, has been published.
2016-08-29 (last edited: 4 weeks ago)2016-08-29
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wwPDB Validation Server Upgrade (wwPDB News)
2016-08-08 (last edited: 1 month ago)2016-08-08
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PDBj has started a service to link each PDBID to the database for Intrinsic Disordered proteins, IDEAL, which is developed by Nagoya University group.
2016-08-03
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Announcement: Map Volume Deposition to EMDB Will Be Mandatory for PDB Depositions of 3DEM models Starting September 6th, 2016 (wwPDB News)
2016-07-07
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The RDF version of SIFTS is now available at our FTP site ftp://ftp.pdbj.org/RDF/sifts/. SIFTS provides various annotations of protein sequences in the PDB such as the Gene Ontology, taxonomy (biological species), structural classifications (SCOP and CATH), enzyme codes, and correspondence with UniProt sequences, and its RDF version facilitates the integration of these data with RDF data from diverse sources by using the semantic web technologies.
2016-06-29
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Deposit ORCID and Grant Information with PDB Data (wwPDB News)
2016-06-27 (last edited: 3 months ago)2016-06-27
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Access to wwPDB and RCSB PDB websites (wwPDB News)
2016-06-22
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The PDBeta web service has terminated.

Please download PDBeta application and use it in local. We'll continue to update it.
2016-06-16 (last edited: 4 months ago)2016-06-16
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AutoDep Deposition System to Be Retired, Effective August 25th 2016. ADIT-NMR and EMDep Deposition Systems to Be Retired, Effective September 30th 2016. (wwPDB News)
2016-06-01 (last edited: 4 months ago)2016-06-02
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Improved Worldwide Support for wwPDB Deposition, Validation, and Annotation (wwPDB News)
2016-05-26
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Designate Depositions for the CASP-12 Structure Prediction Competition (wwPDB News)
2016-05-12
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PDBj announces the bug fix update of the molecular viewer jV 4.5.1. The difference from the previous version (4.5) is that the bug fix involved in writing static image into directories without permission.

2016-05-10 (last edited: 5 months ago)2016-05-11
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New NMR and 3DEM Validation Reports for Archived PDB Structures (wwPDB News)
2016-05-06
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Ligand Validation Workshop Paper Published (wwPDB News)
2016-04-18
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The PDBj Mine2 relational database (RDB) now integrates the summary data of SIFTS developed by PDBe and UniProt. By combining PDBj Mine2 and SIFTS, the user can easily retrieve, using SQL, various annotations of protein sequences in the PDB such as the Gene Ontology, taxonomy (biological species), structural classification (SCOP and CATH), enzyme codes, and correspondence with UniProt sequences. For more information, please refer to the help page.
Please also refer to ftp site (ftp://ftp.pdbj.org/mine2/sifts/) to integrate PDBe's SIFTS into the PDBj Mine2 database.
2016-04-13
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Zika Virus Structure Released (wwPDB News)
2016-04-01
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wwPDB Deposition, Annotation, and Validation System To Support Suppression of Entry Author Lists and Titles (wwPDB News)
2016-03-31
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AutoDep, ADIT-NMR, EMDep Deposition Systems to Be Retired, Effective September 30th 2016 (wwPDB News)
2016-03-31 (last edited: 6 months ago)2016-04-08
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Updated X-ray Validation Reports for Archived PDB Structures Now Available (wwPDB News)
2016-03-18 (last edited: 7 months ago)2016-03-18
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Coming Soon: New NMR and 3DEM Validation Reports for Archived PDB Structures (wwPDB News)
2016-03-07 (last edited: 7 months ago)2016-03-07
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The new version (4.5) of jV molecular viewer provided by PDBj is now available. From this version, it can load and save in mmCIF format for small molecules (chem_comp mmCIF).
2016-03-03 (last edited: 7 months ago)2016-03-03
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Coming soon: Updated X-ray Validation Reports for Archived PDB Structures (wwPDB News)
2016-02-05
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wwPDB Deposition & Annotation System Now Available for NMR and 3DEM Structures (wwPDB News)
2016-01-09 (last edited: 8 months ago)2016-01-28
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The jV 4.4.5, signed with updated certification, has released. The certification used to sign jV 4.4.4 will expire on Jan. 21, 2016. After expired, it doesn't work as applet. So we recommend for all administrator of web servers that include jV applet pages to update jV to 4.4.5. To see details of the changed points, see the Release note section of the jV manual.
2016-01-08 (last edited: 9 months ago)2016-01-12
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The Protein Globe service has been discontinued from January 2016.
2016-01-07
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