1W9H
  • Download 1w9h
  • View 1w9h
Molmil generated image of 1w9h
THE STRUCTURE OF A PIWI PROTEIN FROM ARCHAEOGLOBUS FULGIDUS.
Descriptor:HYPOTHETICAL PROTEIN AF1318
Authors:Parker, J.S., Roe, S.M., Barford, D.
Deposit date:2004-10-13
Release date:2005-01-13
Modification date:2009-02-24
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal Structure of a Piwi Protein Suggests Mechanisms for Sirna Recognition and Slicer Activity
Embo J., 23, 2004
1YTU
  • Download 1ytu
  • View 1ytu
Molmil generated image of 1ytu
STRUCTURAL BASIS FOR 5'-END-SPECIFIC RECOGNITION OF THE GUIDE RNA STRAND BY THE A. FULGIDUS PIWI PROTEIN
Descriptor:hypothetical protein AF1318/RNA Complex
Authors:Ma, J.B., Yuan, Y.R., Meister, G., Pei, Y., Tuschl, T., Patel, D.J.
Deposit date:2005-02-11
Release date:2005-04-05
Modification date:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for 5'-end-specific recognition of guide RNA by the A. fulgidus Piwi protein.
Nature, 434, 2005
1YVU
  • Download 1yvu
  • View 1yvu
Molmil generated image of 1yvu
CRYSTAL STRUCTURE OF A. AEOLICUS ARGONAUTE
Descriptor:hypothetical protein aq_1447
Authors:Yuan, Y.R., Pei, Y., Ma, J.B., Kuryavyi, V., Zhadina, M., Meister, G., Chen, H.Y., Dauter, Z., Tuschl, T., Patel, D.J.
Deposit date:2005-02-16
Release date:2005-08-09
Modification date:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of A. aeolicus Argonaute provides unique perspectives into the mechanism of guide strand-mediated mRNA cleavage
Mol.Cell, 19, 2005
2BGG
  • Download 2bgg
  • View 2bgg
Molmil generated image of 2bgg
THE STRUCTURE OF A PIWI PROTEIN FROM ARCHAEOGLOBUS FULGIDUS COMPLEXED WITH A 16NT SIRNA DUPLEX.
Descriptor:PROTEIN AF1318
Authors:Parker, J.S., Roe, S.M., Barford, D.
Deposit date:2004-12-22
Release date:2005-03-31
Modification date:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Insights Into Mrna Recognition from a Piwi Domain-Sirna Guide Complex
Nature, 434, 2005
2F8S
  • Download 2f8s
  • View 2f8s
Molmil generated image of 2f8s
CRYSTAL STRUCTURE OF AA-AGO WITH EXTERNALLY-BOUND SIRNA
Descriptor:Argonaute protein/RNA Complex
Authors:Yuan, Y.R., Chen, H.Y., Patel, D.J.
Deposit date:2005-12-03
Release date:2006-10-31
Modification date:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:A Potential Protein-RNA Recognition Event along the RISC-Loading Pathway from the Structure of A. aeolicus Argonaute with Externally Bound siRNA.
Structure, 14, 2006
2F8T
  • Download 2f8t
  • View 2f8t
Molmil generated image of 2f8t
CRYSTAL STRUCTURE OF AA-AGO WITH EXTERNALLY-BOUND SIRNA
Descriptor:Argonaute protein/RNA Complex
Authors:Yuan, Y.R., Chen, H.Y., Patel, D.J.
Deposit date:2005-12-03
Release date:2006-10-31
Modification date:2011-07-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:A Potential Protein-RNA Recognition Event along the RISC-Loading Pathway from the Structure of A. aeolicus Argonaute with Externally Bound siRNA.
Structure, 14, 2006
2NUB
  • Download 2nub
  • View 2nub
Molmil generated image of 2nub
STRUCTURE OF AQUIFEX AEOLICUS ARGONUATE
Descriptor:Argonaute
Authors:Rashid, U.J., Paterok, D., Koglin, A., Gohlke, H., Piehler, J., Chen, J.C.-H.
Deposit date:2006-11-09
Release date:2007-02-06
Modification date:2008-07-01
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structure of Aquifex aeolicus argonaute highlights conformational flexibility of the PAZ domain as a potential regulator of RNA-induced silencing complex function.
J.Biol.Chem., 282, 2007
2W42
  • Download 2w42
  • View 2w42
Molmil generated image of 2w42
THE STRUCTURE OF A PIWI PROTEIN FROM ARCHAEOGLOBUS FULGIDUS COMPLEXED WITH A 16NT DNA DUPLEX.
Descriptor:PUTATIVE UNCHARACTERIZED PROTEIN
Authors:Parker, J.S., Roe, S.M., Barford, D.
Deposit date:2008-11-19
Release date:2008-12-09
Modification date:2009-02-17
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Enhancement of the Seed-Target Recognition Step in RNA Silencing by a Piwi-Mid Domain Protein
Mol.Cell, 33, 2009
2XDY
  • Download 2xdy
  • View 2xdy
Molmil generated image of 2xdy
CRYSTAL STRUCTURE OF THE N. CRASSA QDE-2 AGO MID DOMAIN
Descriptor:POST-TRANSCRIPTIONAL GENE SILENCING PROTEIN QDE-2
Authors:Boland, A., Tritschler, F., Weichenrieder, O.
Deposit date:2010-05-10
Release date:2010-06-16
Modification date:2011-05-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure and Ligand Binding of the Mid Domain of a Eukaryotic Argonaute Protein.
Embo Rep., 11, 2010
2YHA
  • Download 2yha
  • View 2yha
Molmil generated image of 2yha
CRYSTAL STRUCTURE OF THE N. CRASSA QDE-2 AGO MID-PIWI DOMAINS
Descriptor:POST-TRANSCRIPTIONAL GENE SILENCING PROTEIN QDE-2
Authors:Boland, A., Weichenrieder, O.
Deposit date:2011-04-27
Release date:2011-06-15
Modification date:2011-07-06
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal Structure of the Mid-Piwi Lobe of a Eukaryotic Argonaute Protein
Proc.Natl.Acad.Sci.USA, 108, 2011
2YHB
  • Download 2yhb
  • View 2yhb
Molmil generated image of 2yhb
CRYSTAL STRUCTURE OF THE N. CRASSA QDE-2 AGO MID-PIWI DOMAINS
Descriptor:POST-TRANSCRIPTIONAL GENE SILENCING PROTEIN QDE-2
Authors:Boland, A., Weichenrieder, O.
Deposit date:2011-04-27
Release date:2011-06-15
Modification date:2011-08-31
Method:X-RAY DIFFRACTION (3.65 Å)
Cite:Crystal Structure of the Mid-Piwi Lobe of a Eukaryotic Argonaute Protein
Proc.Natl.Acad.Sci.USA, 108, 2011
3DLB
  • Download 3dlb
  • View 3dlb
Molmil generated image of 3dlb
CRYSTAL STRUCTURE OF THE GUIDE-STRAND-CONTAINING ARGONAUTE PROTEIN SILENCING COMPLEX
Descriptor:Argonaute/DNA Complex
Authors:Wang, Y., Sheng, G., Patel, D.J.
Deposit date:2008-06-26
Release date:2008-09-02
Modification date:2009-06-09
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of the guide-strand-containing argonaute silencing complex.
Nature, 456, 2008
3DLH
  • Download 3dlh
  • View 3dlh
Molmil generated image of 3dlh
CRYSTAL STRUCTURE OF THE GUIDE-STRAND-CONTAINING ARGONAUTE PROTEIN SILENCING COMPLEX
Descriptor:Argonaute/DNA Complex
Authors:Wang, Y., Sheng, G., Patel, D.J.
Deposit date:2008-06-27
Release date:2008-09-02
Modification date:2009-06-09
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of the guide-strand-containing argonaute silencing complex.
Nature, 456, 2008
3F73
  • Download 3f73
  • View 3f73
Molmil generated image of 3f73
ALIGNMENT OF GUIDE-TARGET SEED DUPLEX WITHIN AN ARGONAUTE SILENCING COMPLEX
Descriptor:ARGONAUTE/DNA/RNA complex
Authors:Wang, Y., Li, H., Sheng, G., Juranek,S., Tuschl, T., Patel, D.J.
Deposit date:2008-11-07
Release date:2008-12-16
Modification date:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of an argonaute silencing complex with a seed-containing guide DNA and target RNA duplex.
Nature, 456, 2008
3HJF
  • Download 3hjf
  • View 3hjf
Molmil generated image of 3hjf
CRYSTAL STRUCTURE OF T. THERMOPHILUS ARGONAUTE E546 MUTANT PROTEIN COMPLEXED WITH DNA GUIDE STRAND AND 15-NT RNA TARGET STRAND
Descriptor:Argonaute/DNA/RNA complex
Authors:Wang, Y., Li, H., Sheng, G., Patel, D.J.
Deposit date:2009-05-21
Release date:2009-10-06
Modification date:2011-07-13
Method:X-RAY DIFFRACTION (3.056 Å)
Cite:Nucleation, propagation and cleavage of target RNAs in Ago silencing complexes.
Nature, 461, 2009
3HK2
  • Download 3hk2
  • View 3hk2
Molmil generated image of 3hk2
CRYSTAL STRUCTURE OF T. THERMOPHILUS ARGONAUTE N478 MUTANT PROTEIN COMPLEXED WITH DNA GUIDE STRAND AND 19-NT RNA TARGET STRAND
Descriptor:Argonaute/DNA/RNA complex
Authors:Wang, Y., Li, H., Sheng, G., Patel, D.J.
Deposit date:2009-05-22
Release date:2009-10-06
Modification date:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Nucleation, propagation and cleavage of target RNAs in Ago silencing complexes.
Nature, 461, 2009
3HM9
  • Download 3hm9
  • View 3hm9
Molmil generated image of 3hm9
CRYSTAL STRUCTURE OF T. THERMOPHILUS ARGONAUTE COMPLEXED WITH DNA GUIDE STRAND AND 19-NT RNA TARGET STRAND
Descriptor:Argonaute
Authors:Wang, Y., Li, H., Sheng, G., Patel, D.J.
Deposit date:2009-05-28
Release date:2009-10-06
Modification date:2011-07-13
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Nucleation, propagation and cleavage of target RNAs in Ago silencing complexes.
Nature, 461, 2009
3HO1
  • Download 3ho1
  • View 3ho1
Molmil generated image of 3ho1
CRYSTAL STRUCTURE OF T. THERMOPHILUS ARGONAUTE N546 MUTANT PROTEIN COMPLEXED WITH DNA GUIDE STRAND AND 12-NT RNA TARGET STRAND
Descriptor:argonaute/DNA/RNA complex
Authors:Wang, Y., Li, H., Sheng, G., Patel, D.J.
Deposit date:2009-06-01
Release date:2009-10-06
Modification date:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Nucleation, propagation and cleavage of target RNAs in Ago silencing complexes.
Nature, 461, 2009
3HVR
  • Download 3hvr
  • View 3hvr
Molmil generated image of 3hvr
CRYSTAL STRUCTURE OF T. THERMOPHILUS ARGONAUTE COMPLEXED WITH DNA GUIDE STRAND AND 19-NT RNA TARGET STRAND WITH TWO MG2+ AT THE CLEAVAGE SITE
Descriptor:argonaute/DNA/RNA complex
Authors:Wang, Y., Li, H., Sheng, G., Patel, D.J.
Deposit date:2009-06-16
Release date:2009-10-06
Modification date:2011-07-13
Method:X-RAY DIFFRACTION (3.211 Å)
Cite:Nucleation, propagation and cleavage of target RNAs in Ago silencing complexes.
Nature, 461, 2009
3HXM
  • Download 3hxm
  • View 3hxm
Molmil generated image of 3hxm
STRUCTURE OF AN ARGONAUTE COMPLEXED WITH GUIDE DNA AND TARGET RNA DUPLEX CONTAINING TWO MISMATCHES.
Descriptor:Argonaute/DNA/RNA complex
Authors:Wang, Y., Li, H., Sheng, G., Patel, D.J.
Deposit date:2009-06-21
Release date:2009-10-06
Modification date:2011-07-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Nucleation, propagation and cleavage of target RNAs in Ago silencing complexes.
Nature, 461, 2009
4F1N
  • Download 4f1n
  • View 4f1n
Molmil generated image of 4f1n
CRYSTAL STRUCTURE OF KLUYVEROMYCES POLYSPORUS ARGONAUTE WITH A GUIDE RNA
Descriptor:KpAGO/DNA Complex
Authors:Nakanishi, K., Weinberg, D.E., Bartel, D.P., Patel, D.J.
Deposit date:2012-05-07
Release date:2012-06-13
Modification date:2012-07-04
Method:X-RAY DIFFRACTION (3.187 Å)
Cite:Structure of yeast Argonaute with guide RNA.
Nature, 486, 2012
4G0M
  • Download 4g0m
  • View 4g0m
Molmil generated image of 4g0m
CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA AGO2 MID DOMAIN
Descriptor:Protein argonaute 2
Authors:Frank, F., Hauver, J., Sonenberg, N., Nagar, B.
Deposit date:2012-07-09
Release date:2012-07-25
Modification date:2012-09-12
Method:X-RAY DIFFRACTION (2.306 Å)
Cite:Arabidopsis Argonaute MID domains use their nucleotide specificity loop to sort small RNAs.
Embo J., 31, 2012
4KPY
  • Download 4kpy
  • View 4kpy
Molmil generated image of 4kpy
DNA BINDING PROTEIN AND DNA COMPLEX STRUCTURE
Descriptor:Uncharacterized protein
Authors:Sheng, G., Zhao, H., Wang, J., Rao, Y., Wang, Y.
Deposit date:2013-05-14
Release date:2014-01-29
Method:X-RAY DIFFRACTION (2.406 Å)
Cite:Structure-based cleavage mechanism of Thermus thermophilus Argonaute DNA guide strand-mediated DNA target cleavage.
Proc.Natl.Acad.Sci.USA, 111, 2014
4N41
  • Download 4n41
  • View 4n41
Molmil generated image of 4n41
STRUCTURE OF THERMUS THERMOPHILUS ARGONAUTE BOUND TO GUIDE DNA AND 15-MER TARGET DNA
Descriptor:Argonaute
Authors:Sheng, G., Zhao, H., Wang, J., Rao, Y., Wang, Y.
Deposit date:2013-10-08
Release date:2014-01-15
Modification date:2014-01-29
Method:X-RAY DIFFRACTION (2.248 Å)
Cite:Structure-based cleavage mechanism of Thermus thermophilus Argonaute DNA guide strand-mediated DNA target cleavage.
Proc.Natl.Acad.Sci.USA, 111, 2014
4N47
  • Download 4n47
  • View 4n47
Molmil generated image of 4n47
STRUCTURE OF THERMUS THERMOPHILUS ARGONAUTE BOUND TO GUIDE DNA AND 12-MER TARGET DNA
Descriptor:Argonaute
Authors:Sheng, G., Zhao, H., Wang, J., Rao, Y., Wang, Y.
Deposit date:2013-10-08
Release date:2014-01-15
Modification date:2014-01-29
Method:X-RAY DIFFRACTION (2.823 Å)
Cite:Structure-based cleavage mechanism of Thermus thermophilus Argonaute DNA guide strand-mediated DNA target cleavage.
Proc.Natl.Acad.Sci.USA, 111, 2014
<123>
PDBj@FacebookPDBj@TwitterwwPDBwwPDB FoundationEM DataBank

Copyright © 2013-2016 Protein Data Bank Japan
This is the static version of the PDBj web interface with limited functionality. Try the full version instead.