PDB: 15 resultsInfo pagesStatus searchChemie searchBIRD

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8IPC	The recombinant NZ-1 Fab complexed with the PDZ tandem fragment of A. aeolicus S2P homolog with the PA14 tag inserted between the residues 181 and 184 Descriptor: Putative zinc metalloprotease aq_1964, The recombinantly-expressed heavy chain of the monoclonal antibody NZ-1, The recombinantly-expressed light chain of the monoclonal antibody NZ-1 Authors: Adachi, Y, Nogi, T. Deposit date: 2023-03-14 Release date: 2024-01-31 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Recombinant production of antibody antigen-binding fragments with an N-terminal human growth hormone tag in mammalian cells. Protein Expr.Purif., 208-209, 2023
7W6Y	Crystal structure of Kangiella koreensis RseP orthologue in complex with batimastat in space group P1 Descriptor: 4-(N-HYDROXYAMINO)-2R-ISOBUTYL-2S-(2-THIENYLTHIOMETHYL)SUCCINYL-L-PHENYLALANINE-N-METHYLAMIDE, Anti sigma-E protein, RseA, ... Authors: Imaizumi, Y, Takanuki, K, Nogi, T. Deposit date: 2021-12-02 Release date: 2022-09-07 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Mechanistic insights into intramembrane proteolysis by E. coli site-2 protease homolog RseP. Sci Adv, 8, 2022
7W6X	Crystal structure of E. coli RseP in complex with batimastat Descriptor: 4-(N-HYDROXYAMINO)-2R-ISOBUTYL-2S-(2-THIENYLTHIOMETHYL)SUCCINYL-L-PHENYLALANINE-N-METHYLAMIDE, Regulator of sigma-E protease RseP, ZINC ION Authors: Takanuki, K, Imaizumi, Y, Nogi, T. Deposit date: 2021-12-02 Release date: 2022-09-07 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Mechanistic insights into intramembrane proteolysis by E. coli site-2 protease homolog RseP. Sci Adv, 8, 2022
7W6Z	Crystal structure of Kangiella koreensis RseP orthologue in complex with batimastat in space group P21 Descriptor: 4-(N-HYDROXYAMINO)-2R-ISOBUTYL-2S-(2-THIENYLTHIOMETHYL)SUCCINYL-L-PHENYLALANINE-N-METHYLAMIDE, ZINC ION, Zinc metalloprotease Authors: Imaizumi, Y, Takanuki, K, Nogi, T. Deposit date: 2021-12-02 Release date: 2022-09-07 Method: X-RAY DIFFRACTION (3.15 Å) Cite: Mechanistic insights into intramembrane proteolysis by E. coli site-2 protease homolog RseP. Sci Adv, 8, 2022
7CQD	The NZ-1 Fab complexed with the PDZ tandem fragment of A. aeolicus S2P homolog with the PA14 tag inserted between the residues 235 and 236 Descriptor: Heavy chain of antigen binding fragment, Fab of NZ-1, Light chain of antigen binding fragment, ... Authors: Tamura-Sakaguchi, R, Aruga, R, Nogi, T. Deposit date: 2020-08-10 Release date: 2021-05-19 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Moving toward generalizable NZ-1 labeling for 3D structure determination with optimized epitope-tag insertion. Acta Crystallogr D Struct Biol, 77, 2021
7CQC	The NZ-1 Fab complexed with the PDZ tandem fragment of A. aeolicus S2P homolog with the PA14 tag inserted between the residues 181 and 184 Descriptor: Heavy chain of antigen binding fragment, Fab of NZ-1, Light chain of antigen binding fragment, ... Authors: Aruga, R, Tamura-Sakaguchi, R, Nogi, T. Deposit date: 2020-08-10 Release date: 2021-05-19 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Moving toward generalizable NZ-1 labeling for 3D structure determination with optimized epitope-tag insertion. Acta Crystallogr D Struct Biol, 77, 2021
6ICF	The NZ-1 Fab complexed with the PDZ tandem fragment of A. aeolicus S2P homolog with the PA12 tag inserted between the residues 263 and 266 Descriptor: Heavy chain of antigen binding fragment, Fab of NZ-1, Light chain of antigen binding fragment, ... Authors: Tamura, R, Oi, R, Kaneko, M.K, Kato, Y, Nogi, T. Deposit date: 2018-09-05 Release date: 2019-02-13 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (4 Å) Cite: Application of the NZ-1 Fab as a crystallization chaperone for PA tag-inserted target proteins. Protein Sci., 28, 2019
6ICC	The NZ-1 Fab complexed with the PDZ tandem fragment of A. aeolicus S2P homolog with the PA12 tag inserted between the residues 181 and 186 Descriptor: Heavy chain of antigen binding fragment, Fab of NZ-1, Light chain of antigen binding fragment, ... Authors: Tamura, R, Oi, R, Kaneko, M.K, Kato, Y, Nogi, T. Deposit date: 2018-09-05 Release date: 2019-02-13 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2 Å) Cite: Application of the NZ-1 Fab as a crystallization chaperone for PA tag-inserted target proteins. Protein Sci., 28, 2019
6AL1	The NZ-1 Fab complexed with the PDZ tandem fragment of A. aeolicus S2P homolog with the PA12 tag inserted between the residues 181 and 184 Descriptor: Heavy chain of antigen binding fragment, Fab of NZ-1, Light chain of antigen binding fragment, ... Authors: Tamura, R, Oi, R, Kaneko, M.K, Kato, Y, Nogi, T. Deposit date: 2018-09-05 Release date: 2019-02-13 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Application of the NZ-1 Fab as a crystallization chaperone for PA tag-inserted target proteins. Protein Sci., 28, 2019
6AL0	The NZ-1 Fab complexed with the PDZ tandem fragment of A. aeolicus S2P homolog with the PA12 tag inserted between the residues 263 and 267 Descriptor: Heavy chain of antigen binding fragment, Fab of NZ-1, Light chain of antigen binding fragment, ... Authors: Tamura, R, Oi, R, Kaneko, M.K, Kato, Y, Nogi, T. Deposit date: 2018-09-05 Release date: 2019-02-13 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Application of the NZ-1 Fab as a crystallization chaperone for PA tag-inserted target proteins. Protein Sci., 28, 2019
6AKQ	The PDZ tandem fragment of A. aeolicus S2P homolog with the PA12 tag inserted between the residues 263 and 267 Descriptor: PDZ tandem fragment of A. aeolicus site-2 protease homolog with the PA tag insertion Authors: Tamura, R, Oi, R, Kaneko, M.K, Kato, Y, Nogi, T. Deposit date: 2018-09-03 Release date: 2019-02-13 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Application of the NZ-1 Fab as a crystallization chaperone for PA tag-inserted target proteins. Protein Sci., 28, 2019
3WKL	The periplasmic PDZ tandem fragment of the RseP homologue from Aquifex aeolicus Descriptor: Putative Zinc Metalloprotease AQ_1964 Authors: Nogi, T, Tabata, S, Tamura-kawakami, K, Takagi, J. Deposit date: 2013-10-28 Release date: 2013-12-18 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.8 Å) Cite: A Structure-Based Model of Substrate Discrimination by a Noncanonical PDZ Tandem in the Intramembrane-Cleaving Protease RseP Structure, 22, 2013
3WKM	The periplasmic PDZ tandem fragment of the RseP homologue from Aquifex aeolicus in complex with the Fab fragment Descriptor: MOUSE IGG1-KAPPA FAB (HEAVY CHAIN), MOUSE IGG1-KAPPA FAB (LIGHT CHAIN), Putative zinc metalloprotease aq_1964 Authors: Nogi, T, Tabata, S, Tamura-kawakami, K, Takagi, J. Deposit date: 2013-10-28 Release date: 2013-12-18 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.2 Å) Cite: A Structure-Based Model of Substrate Discrimination by a Noncanonical PDZ Tandem in the Intramembrane-Cleaving Protease RseP Structure, 22, 2013
3B4R	Site-2 Protease from Methanocaldococcus jannaschii Descriptor: Putative zinc metalloprotease MJ0392, ZINC ION Authors: Jeffrey, P.D, Feng, L, Yan, H, Wu, Z, Yan, N, Wang, Z, Shi, Y. Deposit date: 2007-10-24 Release date: 2008-01-15 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Structure of a site-2 protease family intramembrane metalloprotease. Science, 318, 2007
2HGA	Solution NMR Structure of Conserved protein MTH1368, Northeast Structural Genomics Consortium Target TT821A Descriptor: Conserved protein MTH1368 Authors: Liu, G, Lin, Y, Parish, D, Shen, Y, Sukumaran, D, Yee, A, Semesi, A, Arrowsmith, C, Szyperski, T, Northeast Structural Genomics Consortium (NESG) Deposit date: 2006-06-26 Release date: 2006-07-25 Last modified: 2022-12-21 Method: SOLUTION NMR Cite: Solution NMR Structure of Conserved protein MTH1368, Northeast Structural Genomics Consortium Target TT821A TO BE PUBLISHED