5AJG
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STRUCTURE OF INFRARED FLUORESCENT PROTEIN IFP1.4 AT 1.11 ANGSTROM RESOLUTION
Descriptor:BACTERIOPHYTOCHROME (E.C.2.7.13.3)
Authors:Lafaye, C., Shu, X., Royant, A.
Deposit date:2015-02-24
Release date:2016-03-09
Method:X-RAY DIFFRACTION (1.11 Å)
Cite:Structural Determinants of Improved Fluorescence in a Family of Bacteriophytochrome-Based Infrared Fluorescent Proteins: Insights from Continuum Electrostatic Calculations and Molecular Dynamics Simulations.
To be Published
5C5K
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STRUCTURE OF THE PFR FORM OF A CANONICAL PHYTOCHROME
Descriptor:Bacteriophytochrome (E.C.2.7.13.3)
Authors:Burgie, E.S., Vierstra, R.D.
Deposit date:2015-06-20
Release date:2016-02-17
Modification date:2016-03-16
Method:X-RAY DIFFRACTION (3.31 Å)
Cite:Crystal Structure of Deinococcus Phytochrome in the Photoactivated State Reveals a Cascade of Structural Rearrangements during Photoconversion.
Structure, 24, 2016
4Z1W
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CRYSTAL STRUCTURE OF MONOMERIC BACTERIOPHYTOCHROME MUTANT D207L Y263F FROM SYNCHROTRON
Descriptor:Bacteriophytochrome (E.C.2.7.13.3)
Authors:Bhattacharya, S., Satyshur, K.A., Wangkanont, K., Lehtivuori, H., Forest, K.T.
Deposit date:2015-03-27
Release date:2016-01-20
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Removal of Chromophore-Proximal Polar Atoms Decreases Water Content and Increases Fluorescence in a Near Infrared Phytofluor.
Front Mol Biosci, 2, 2015
4ZRR
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CRYSTAL STRUCTURE OF MONOMERIC BACTERIOPHYTOCHROME MUTANT D207L Y263F AT 1.5 A RESOLUTION USING A HOME SOURCE.
Descriptor:Bacteriophytochrome (E.C.2.7.13.3)
Authors:Bhattacharya, S., Satyshur, K.A., Lehtivuori, H., Forest, K.T.
Deposit date:2015-05-12
Release date:2016-01-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Removal of Chromophore-Proximal Polar Atoms Decreases Water Content and Increases Fluorescence in a Near Infrared Phytofluor.
Front Mol Biosci, 2, 2015
3JBQ
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DOMAIN ORGANIZATION AND CONFORMATIONAL PLASTICITY OF THE G PROTEIN EFFECTOR, PDE6
Descriptor:IgG1-kappa 2E8 light chain, IgG1-kappa 2E8 heavy chain, phosphodiesterase 5/6 chimera catalytic domain, phosphodiesterase 6 gamma subunit inhibitory peptide, GafB domain of phosphodiesterase 2A, GafA domain of cone phosphodiesterase 6C
Authors:Zhang, Z., He, F., Constantine, R., Baker, M.L., Baehr, W., Schmid, M.F., Wensel, T.G., Agosto, M.A.
Deposit date:2015-09-17
Release date:2015-09-30
Method:ELECTRON MICROSCOPY (11 Å)
Cite:Domain Organization and Conformational Plasticity of the G Protein Effector, PDE6.
J.Biol.Chem., 290, 2015
4R6L
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CRYSTAL STRUCTURE OF BACTERIOPHYTOCHROME RPBPHP2 FROM PHOTOSYNTHETIC BACTERIUM R. PALUSTRIS
Descriptor:Bacteriophytochrome (Light-regulated signal transduction histidine kinase), PhyB1
Authors:Yang, X., Stojkovic, E., Ozarowski, W., Kuk, J., Davydova, E., Moffat, K.
Deposit date:2014-08-25
Release date:2015-07-22
Method:X-RAY DIFFRACTION (3.395 Å)
Cite:Light Signaling Mechanism of Two Tandem Bacteriophytochromes.
Structure, 23, 2015
4R70
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CRYSTAL STRUCTURE OF BACTERIOPHYTOCHROME RPBPHP3 FROM PHOTOSYNTHETIC BACTERIUM R. PALUSTRIS
Descriptor:Bacteriophytochrome (Light-regulated signal transduction histidine kinase), PhyB2
Authors:Yang, X., Kuk, J., Moffat, K.
Deposit date:2014-08-26
Release date:2015-07-15
Modification date:2015-08-05
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Light Signaling Mechanism of Two Tandem Bacteriophytochromes.
Structure, 23, 2015
4S21
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CRYSTAL STRUCTURE OF THE PHOTOSENSORY CORE MODULE OF BACTERIOPHYTOCHROME RPA3015 FROM R. PALUSTRIS
Descriptor:Bacteriophytochrome (Light-regulated signal transduction histidine kinase), PhyB1
Authors:Yang, X., Stojkovi, E.A., Ozarowski, W.B., Moffat, K.
Deposit date:2015-01-17
Release date:2015-07-15
Modification date:2015-08-05
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Light Signaling Mechanism of Two Tandem Bacteriophytochromes.
Structure, 23, 2015
3JAB
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DOMAIN ORGANIZATION AND CONFORMATIONAL PLASTICITY OF THE G PROTEIN EFFECTOR, PDE6
Descriptor:GafA domain of cone phosphodiesterase 6C, GafB domain of phosphodiesterase 2A, phosphodiesterase 5/6 chimera catalytic domain, phosphodiesterase 6 gamma subunit inhibitory peptide, IgG1-kappa 2E8 light chain, IgG1-kappa 2E8 heavy chain
Authors:Zhang, Z., He, F., Constantine, R., Baker, M.L., Baehr, W., Schmid, M.F., Wensel, T.G., Agosto, M.A.
Deposit date:2015-05-26
Release date:2015-06-10
Method:ELECTRON MICROSCOPY (11 Å)
Cite:Domain Organization and Conformational Plasticity of the G Protein Effector, PDE6.
J.Biol.Chem., 290, 2015
4Y3I
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PAS-GAF FRAGMENT FROM DEINOCOCCUS RADIODURANS BPHP ASSEMBLED WITH BV - Y307S, LOW DOSE
Descriptor:bilin chromophore (E.C.2.7.13.3)
Authors:Li, F., Burgie, E.S., Yu, T., Heroux, A., Schatz, G.C., Vierstra, R.D., Orville, A.M.
Deposit date:2015-02-10
Release date:2015-05-20
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:X-ray radiation induces deprotonation of the bilin chromophore in crystalline D. radiodurans phytochrome.
J.Am.Chem.Soc., 137, 2015
4Y5F
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PAS-GAF FRAGMENT FROM DEINOCOCCUS RADIODURANS BPHP ASSEMBLED WITH BV - Y307S, HIGH DOSE
Descriptor:PAS-GAF fragment from Deinococcus radiodurans BphP assembled with biliverdin IXa
Authors:Li, F., Burgie, E.S., Yu, T., Heroux, A., Schatz, G.C., Vierstra, R.D., Orville, A.M.
Deposit date:2015-02-11
Release date:2015-05-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:X-ray radiation induces deprotonation of the bilin chromophore in crystalline D. radiodurans phytochrome.
J.Am.Chem.Soc., 137, 2015
4O8G
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STRUCTURE OF INFRARED FLUORESCENT PROTEIN 1.4
Descriptor:Bacteriophytochrome
Authors:Bhattacharya, S., Forest, K.T.
Deposit date:2013-12-27
Release date:2014-10-01
Modification date:2014-12-03
Method:X-RAY DIFFRACTION (1.652 Å)
Cite:Origins of fluorescence in evolved bacteriophytochromes.
J.Biol.Chem., 289, 2014
4OUR
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CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA PHYTOCHROME B PHOTOSENSORY MODULE
Descriptor:Phytochrome B
Authors:Sethe Burgie, E., Bussell, A.N., Walker, J.M., Dubiel, K., Vierstra, R.D.
Deposit date:2014-02-18
Release date:2014-07-16
Modification date:2014-07-30
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Crystal structure of the photosensing module from a red/far-red light-absorbing plant phytochrome.
Proc.Natl.Acad.Sci.USA, 111, 2014
4Q0H
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DEINOCOCCUS RADIODURANS BPHP PAS-GAF
Descriptor:Deinococcus radiodurans PAS-GAF
Authors:Burgie, E.S., Vierstra, R.D.
Deposit date:2014-04-02
Release date:2014-07-16
Modification date:2014-09-17
Method:X-RAY DIFFRACTION (1.157 Å)
Cite:Crystallographic and Electron Microscopic Analyses of a Bacterial Phytochrome Reveal Local and Global Rearrangements during Photoconversion.
J.Biol.Chem., 289, 2014
4Q0I
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DEINOCOCCUS RADIODURANS BPHP PAS-GAF D207A MUTANT
Descriptor:Deinococcus radiodurans BphP PAS-GAF
Authors:Burgie, E.S., Vierstra, R.D.
Deposit date:2014-04-02
Release date:2014-07-16
Modification date:2014-09-17
Method:X-RAY DIFFRACTION (1.744 Å)
Cite:Crystallographic and Electron Microscopic Analyses of a Bacterial Phytochrome Reveal Local and Global Rearrangements during Photoconversion.
J.Biol.Chem., 289, 2014
4Q0J
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DEINOCOCCUS RADIODURANS BPHP PHOTOSENSORY MODULE
Descriptor:Deinococcus radiodurans BphP photosensory module
Authors:Burgie, E.S., Vierstra, R.D.
Deposit date:2014-04-02
Release date:2014-07-16
Modification date:2014-09-17
Method:X-RAY DIFFRACTION (2.747 Å)
Cite:Crystallographic and Electron Microscopic Analyses of a Bacterial Phytochrome Reveal Local and Global Rearrangements during Photoconversion.
J.Biol.Chem., 289, 2014
4CQH
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STRUCTURE OF INFRARED FLUORESCENT PROTEIN IFP2.0
Descriptor:BACTERIOPHYTOCHROME
Authors:Lafaye, C., Yu, D., Noirclerc-Savoye, M., Shu, X., Royant, A.
Deposit date:2014-02-17
Release date:2014-05-28
Method:X-RAY DIFFRACTION (1.14 Å)
Cite:An Improved Monomeric Infrared Fluorescent Protein for Neuronal and Tumour Brain Imaging.
Nat.Commun., 5, 2014
4O01
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CRYSTAL STRUCTURE OF D. RADIODURANS BACTERIOPHYTOCHROME PHOTOSENSORY CORE MODULE IN ITS ILLUMINATED FORM
Descriptor:Bacteriophytochrome (E.C.2.7.13.3)
Authors:Takala, H., Ihalainen, J.A., Westenhoff, S.
Deposit date:2013-12-13
Release date:2014-05-07
Modification date:2014-05-14
Method:X-RAY DIFFRACTION (3.24 Å)
Cite:Signal amplification and transduction in phytochrome photosensors
Nature, 509, 2014
4O0P
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CRYSTAL STRUCTURE OF D. RADIODURANS BACTERIOPHYTOCHROME PHOTOSENSORY CORE MODULE IN ITS DARK FORM
Descriptor:Bacteriophytochrome (E.C.2.7.13.3)
Authors:Takala, H., Ihalainen, J.A., Westenhoff, S.
Deposit date:2013-12-14
Release date:2014-05-07
Modification date:2014-05-14
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Signal amplification and transduction in phytochrome photosensors
Nature, 509, 2014
4MCW
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METALLO-ENZYME FROM P. MARINA
Descriptor:Metal dependent phosphohydrolase
Authors:Bellini, D., Walsh, M.A., Oxford Protein Production Facility (OPPF)
Deposit date:2013-08-21
Release date:2014-02-19
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Crystal structure of an HD-GYP domain cyclic-di-GMP phosphodiesterase reveals an enzyme with a novel trinuclear catalytic iron centre.
Mol.Microbiol., 91, 2014
4MDZ
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METALLO-ENZYME FROM P. MARINA
Descriptor:Metal dependent phosphohydrolase
Authors:Bellini, D., Walsh, M.A., Oxford Protein Production Facility (OPPF)
Deposit date:2013-08-23
Release date:2014-02-19
Method:X-RAY DIFFRACTION (2.68 Å)
Cite:Crystal structure of an HD-GYP domain cyclic-di-GMP phosphodiesterase reveals an enzyme with a novel trinuclear catalytic iron centre.
Mol.Microbiol., 91, 2014
4ME4
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METALLO-ENZYME FROM P. MARINA
Descriptor:Metal dependent phosphohydrolase
Authors:Bellini, D., Walsh, M.A., Oxford Protein Production Facility (OPPF)
Deposit date:2013-08-24
Release date:2014-02-19
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Crystal structure of an HD-GYP domain cyclic-di-GMP phosphodiesterase reveals an enzyme with a novel trinuclear catalytic iron centre.
Mol.Microbiol., 91, 2014
2M7U
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BLUE LIGHT-ABSORBING STATE OF TEPIXJ, AN ACTIVE CYANOBACTERIOCHROME DOMAIN
Descriptor:Methyl-accepting chemotaxis protein
Authors:Cornilescu, G., Cornilescu, C.C., Burgie, S.E., Walker, J.M., Markley, J.L., Ulijasz, A.T., Vierstra, R.D.
Deposit date:2013-05-01
Release date:2014-01-01
Method:SOLUTION NMR
Cite:Structural and Flexibility Variations Between the Ground and Photoactivated States of a Blue/Green Light-Absorbing Cyanobacteriochrome
To be Published
2M7V
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GREEN LIGHT-ABSORBING STATE OF TEPIXJ, AN ACTIVE CYANOBACTERIOCHROME DOMAIN
Descriptor:Methyl-accepting chemotaxis protein
Authors:Cornilescu, G., Cornilescu, C.C., Burgie, S.E., Walker, J.M., Markley, J.L., Ulijasz, A.T., Vierstra, R.D.
Deposit date:2013-05-01
Release date:2014-01-01
Method:SOLUTION NMR
Cite:Structural and Flexibility Variations Between the Ground and Photoactivated States of a Blue/Green Light-Absorbing Cyanobacteriochrome
To be Published
4IJG
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CRYSTAL STRUCTURE OF MONOMERIC BACTERIOPHYTOCHROME
Descriptor:Bacteriophytochrome (E.C.2.7.13.3)
Authors:Auldridge, M.E.
Deposit date:2012-12-21
Release date:2013-12-25
Modification date:2014-12-03
Method:X-RAY DIFFRACTION (1.701 Å)
Cite:Origins of fluorescence in evolved bacteriophytochromes.
J.Biol.Chem., 289, 2014
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