PDB: 46 resultsInfo pagesStatus searchChemie searchBIRD

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7PKQ	Small subunit of the Chlamydomonas reinhardtii mitoribosome Descriptor: 30S ribosomal protein S9, chloroplastic, Mitochondrial ribosomal protein S13, ... Authors: Waltz, F, Soufari, H, Hashem, Y. Deposit date: 2021-08-26 Release date: 2023-06-14 Method: ELECTRON MICROSCOPY (4.2 Å) Cite: The Chlamydomonas mitochondrial ribosome: how to build a ribosome from RNA fragments To Be Published
7WWS	Structure of a triple-helix region of human collagen type III from Trautec Descriptor: Collagen alpha-1(III) chain Authors: Qian, S, Li, H, Fan, X, Tian, X, Li, J, Wang, L, Chu, Y. Deposit date: 2022-02-14 Release date: 2022-04-06 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.3 Å) Cite: Structure of a triple-helix region of human collagen type III from Trautec To Be Published
7WWR	Structure of a triple-helix region of human collagen type III from Trautec Descriptor: Collagen alpha-1(III) chain Authors: Qian, S, Li, H, Fan, X, Tian, X, Li, J, Wang, L, Chu, Y. Deposit date: 2022-02-14 Release date: 2022-04-06 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.3 Å) Cite: Structure of a triple-helix region of human collagen type III from Trautec To Be Published
7BEE	Crystal structure of a Hsp47-collagen peptide complex Descriptor: 21er collagen model peptide, Collagen-binding protein Authors: Abraham, E.T, Gebauer, J.M, Baumann, U. Deposit date: 2020-12-23 Release date: 2021-11-10 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.939 Å) Cite: Collagen's primary structure determines collagen:HSP47 complex stoichiometry. J.Biol.Chem., 297, 2021
7BDU	Crystal structure of a Hsp47-collagen peptide complex Descriptor: 21er collagen model peptide, Collagen-binding protein Authors: Abraham, E.T, Gebauer, J.M, Baumann, U. Deposit date: 2020-12-22 Release date: 2021-11-10 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.49 Å) Cite: Collagen's primary structure determines collagen:HSP47 complex stoichiometry. J.Biol.Chem., 297, 2021
7E7B	Cryo-EM structure of the SARS-CoV-2 furin site mutant S-Trimer from a subunit vaccine candidate Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-hydroxyethyl 2-deoxy-3,5-bis-O-(2-hydroxyethyl)-6-O-(2-{[(9E)-octadec-9-enoyl]oxy}ethyl)-alpha-L-xylo-hexofuranoside, ... Authors: Zheng, S, Ma, J. Deposit date: 2021-02-25 Release date: 2021-03-24 Last modified: 2022-12-07 Method: ELECTRON MICROSCOPY (2.6 Å) Cite: Cryo-EM structure of S-Trimer, a subunit vaccine candidate for COVID-19. J.Virol., 95, 2021
7E7D	Cryo-EM structure of the SARS-CoV-2 wild-type S-Trimer from a subunit vaccine candidate Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 9-OCTADECENOIC ACID, ... Authors: Zheng, S, Ma, J. Deposit date: 2021-02-25 Release date: 2021-03-24 Last modified: 2022-12-07 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Cryo-EM structure of S-Trimer, a subunit vaccine candidate for COVID-19. J.Virol., 95, 2021
6JEC	Structure of a triple-helix region of human collagen type II Descriptor: human collagen type II Authors: Yang, X, Zhu, Y, Ye, S, Zhang, R. Deposit date: 2019-02-05 Release date: 2020-02-05 Method: X-RAY DIFFRACTION (2.049 Å) Cite: Structure of a triple-helix region of human collagen type II. To Be Published
6HG7	Crystal structure of a collagen II fragment containing the binding site of PEDF and COMP, (POG)4-LKG HRG FTG LQG-POG(4) Descriptor: Collagen alpha-1(II) chain, SULFATE ION Authors: Gebauer, J.M, Koehler, A, Dietmar, H, Gompert, M, Neundorf, I, Zaucke, F, Koch, M, Baumann, U. Deposit date: 2018-08-22 Release date: 2018-12-05 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1 Å) Cite: COMP and TSP-4 interact specifically with the novel GXKGHR motif only found in fibrillar collagens. Sci Rep, 8, 2018
5OU9	Crystal structure of Glycoprotein VI in complex with collagen-peptide (GPO)3 Descriptor: (GPO)3, 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ... Authors: Feitsma, L.J, Huizinga, E.G. Deposit date: 2017-08-23 Release date: 2018-09-05 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural insights into collagen-binding by platelet receptor Glycoprotein VI To be Published
5OXS	Crystal structure of human lung surfactant protein D trimeric fragment with bound ligand Salmonella enterica Minnesota R5 oligosaccharide Descriptor: CALCIUM ION, Pulmonary surfactant-associated protein D, alpha-D-glucopyranose-(1-3)-L-glycero-alpha-D-manno-heptopyranose-(1-3)-L-glycero-alpha-D-manno-heptopyranose-(1-5)-4,7-anhydro-3-deoxy-D-gluco-oct-2-ulosonic acid Authors: Shrive, A.K, Greenhough, T.J. Deposit date: 2017-09-07 Release date: 2018-06-20 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Structural definition of hSP-D recognition of Salmonella enterica LPS inner core oligosaccharides reveals alternative binding modes for the same LPS. PLoS ONE, 13, 2018
5OXR	Crystal structure of human lung surfactant protein D trimeric fragment with bound ligand Salmonella enterica Minnesota R7 oligosaccharide Descriptor: CALCIUM ION, L-glycero-alpha-D-manno-heptopyranose-(1-3)-L-glycero-alpha-D-manno-heptopyranose-(1-5)-4,7-anhydro-3-deoxy-D-gluco-oct-2-ulosonic acid, Pulmonary surfactant-associated protein D Authors: Shrive, A.K, Greenhough, T.J. Deposit date: 2017-09-07 Release date: 2018-06-20 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Structural definition of hSP-D recognition of Salmonella enterica LPS inner core oligosaccharides reveals alternative binding modes for the same LPS. PLoS ONE, 13, 2018
5MV4	ACC1 Fab fragment in complex with citrullinated CII616-639 epitope of collagen type II (ptm23) Descriptor: ACC1 antibody Fab fragment, heavy chain, light chain, ... Authors: Dobritzsch, D, Holmdahl, R, Ge, C. Deposit date: 2017-01-15 Release date: 2017-07-19 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Anti-citrullinated protein antibodies cause arthritis by cross-reactivity to joint cartilage. JCI Insight, 2, 2017
5MV3	ACC1 Fab fragment in complex with CII583-591 (CG10) Descriptor: heavy chain of ACC1 Fab fragment, light chain of ACC1 Fab fragment, synthetic peptide containing the CII583-591 epitope of collagen type II,Collagen alpha-1(II) chain,synthetic peptide containing the CII583-591 epitope of collagen type II, Authors: Dobritzsch, D, Holmdahl, R, Ge, C. Deposit date: 2017-01-15 Release date: 2017-07-19 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.95 Å) Cite: Anti-citrullinated protein antibodies cause arthritis by cross-reactivity to joint cartilage. JCI Insight, 2, 2017
5CVA	Crystal structure of the type IX collagen NC2 hetero-trimerization domain with a guest fragment a1a2a1 of type I collagen Descriptor: Collagen alpha-1(I) chain,Collagen alpha-2(IX) chain, Collagen alpha-1(I) chain,Collagen alpha-3(IX) chain, Collagen alpha-2(I) chain,Collagen alpha-1(IX) chain, ... Authors: Boudko, S.P, Bachinger, H.P. Deposit date: 2015-07-25 Release date: 2016-08-10 Last modified: 2017-07-12 Method: X-RAY DIFFRACTION (2.098 Å) Cite: Structural insight for chain selection and stagger control in collagen. Sci Rep, 6, 2016
5CVB	Crystal structure of the type IX collagen NC2 hetero-trimerization domain with a guest fragment a1a1a1 of type I collagen Descriptor: Collagen alpha-1(I) chain,Collagen alpha-1(IX) chain, Collagen alpha-1(I) chain,Collagen alpha-2(IX) chain, Collagen alpha-1(I) chain,Collagen alpha-3(IX) chain, ... Authors: Boudko, S.P, Bachinger, H.P. Deposit date: 2015-07-25 Release date: 2016-08-10 Last modified: 2017-07-12 Method: X-RAY DIFFRACTION (2.249 Å) Cite: Structural insight for chain selection and stagger control in collagen. Sci Rep, 6, 2016
5CTI	Crystal structure of the type IX collagen NC2 hetero-trimerization domain with a guest fragment a2a1a1 of type I collagen (native form) Descriptor: Collagen alpha-1(I) chain,Collagen alpha-1(IX) chain, Collagen alpha-1(I) chain,Collagen alpha-3(IX) chain, Collagen alpha-2(I) chain,Collagen alpha-2(IX) chain, ... Authors: Boudko, S.P, Bachinger, H.P. Deposit date: 2015-07-24 Release date: 2016-08-03 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.8994 Å) Cite: Structural insight for chain selection and stagger control in collagen. Sci Rep, 6, 2016
5CTD	Crystal structure of the type IX collagen NC2 hetero-trimerization domain with a guest fragment a2a1a1 of type I collagen Descriptor: Collagen alpha-1(I) chain,Collagen alpha-1(IX) chain, Collagen alpha-1(I) chain,Collagen alpha-3(IX) chain, Collagen alpha-2(I) chain,Collagen alpha-2(IX) chain Authors: Boudko, S.P, Bachinger, H.P. Deposit date: 2015-07-23 Release date: 2016-08-03 Last modified: 2017-07-12 Method: X-RAY DIFFRACTION (1.5991 Å) Cite: Structural insight for chain selection and stagger control in collagen. Sci Rep, 6, 2016
4BJ3	Integrin alpha2 I domain E318W-collagen complex Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, GFOGER PEPTIDE, ... Authors: Carafoli, F, Hamaia, S.W, Bihan, D, Hohenester, E, Farndale, R.W. Deposit date: 2013-04-16 Release date: 2013-11-20 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (3.042 Å) Cite: An Activating Mutation Reveals a Second Binding Mode of the Integrin Alpha2 I Domain to the Gfoger Motif in Collagens. Plos One, 8, 2013
4E52	Crystal structure of Haemophilus Eagan 4A polysaccharide bound human lung surfactant protein D Descriptor: 4,7-anhydro-3-deoxy-D-manno-oct-2-ulosonic acid-(5-1)-L-glycero-alpha-D-manno-heptopyranose, CALCIUM ION, Pulmonary surfactant-associated protein D Authors: Shrive, A.K, Greenhough, T.J. Deposit date: 2012-03-13 Release date: 2013-03-27 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Crystal Structure of a Complex of Surfactant Protein D (SP-D) and Haemophilus influenzae Lipopolysaccharide Reveals Shielding of Core Structures in SP-D-Resistant Strains. Infect.Immun., 84, 2016
4GYX	The von Willebrand Factor A3 domain binding region of type III collagen stabilized by the cysteine knot Descriptor: Type III collagen fragment in a host peptide stabilized by the cysteine knot Authors: Boudko, S.P, Bachinger, H.P. Deposit date: 2012-09-05 Release date: 2012-10-17 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.49 Å) Cite: The NC2 Domain of Type IX Collagen Determines the Chain Register of the Triple Helix. J.Biol.Chem., 287, 2012
3B0S	Crystal Structure of (Gly-Pro-Hyp)9 Descriptor: collagen-like peptide Authors: Okuyama, K, Miyama, K, Mizuno, K, Bachinger, H.P. Deposit date: 2011-06-14 Release date: 2012-05-30 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.45 Å) Cite: Crystal structure of (Gly-Pro-Hyp)(9) : Implications for the collagen molecular model. Biopolymers, 97, 2012
3B2C	Crystal structure of the collagen triple helix model [{PRO-HYP(R)-GLY}4-{HYP(S)-Pro-GLY}2-{PRO-HYP(R)-GLY}4]3 Descriptor: Collagen-like peptide Authors: Motooka, D, Kawahara, K, Nakamura, S, Doi, M, Nishi, Y, Nishiuchi, Y, Nakazawa, T, Yoshida, T, Ohkubo, T, Kobayashi, Y, Kang, Y.K, Uchiyama, S. Deposit date: 2011-07-26 Release date: 2012-04-04 Method: X-RAY DIFFRACTION (1.36 Å) Cite: The triple helical structure and stability of collagen model peptide with 4(S)-hydroxyprolyl-pro-gly units Biopolymers, 98, 2011
3AI6	Triple-helical structure of (D-Pro-D-Pro-Gly)9 at 1.1 A resolution Descriptor: collagen-like peptide Authors: Okuyama, K, Miyama, K, Kawaguchi, T, Nishino, N. Deposit date: 2010-05-10 Release date: 2011-04-27 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.1 Å) Cite: Triple-helical structure of (D-Pro-D-Pro-Gly)9 To be Published
3AH9	Crystal structure of (Pro-Pro-Gly)9 at 1.1 A resolution Descriptor: ACETIC ACID, AZIDE ION, collagen-like peptide Authors: Okuyama, K, Morimoto, T, Hongo, C, Hosaka, N, Nishino, N. Deposit date: 2010-04-22 Release date: 2011-04-06 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.08 Å) Cite: Crystal structure of (Pro-Pro-Gly)9 To be Published

 

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