PDB: 177 resultsInfo pagesStatus searchChemie searchBIRD

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1NWZ	PYP Ultra-high resolution structure of a Bacterial Photoreceptor Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein Authors: Getzoff, E.D, Gutwin, K.N, Genick, U.K. Deposit date: 2003-02-07 Release date: 2003-03-11 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (0.82 Å) Cite: Anticipatory active-site motions and chromophore distortions prime photoreceptor PYP for light activation Nat.Struct.Biol., 10, 2003
6UN0	Crystal structure of photoactive yellow protein (PYP); F96(4-IF) construct with 3-Br-p-coumaric acid chromophore Descriptor: (2E)-3-(3-bromo-4-hydroxyphenyl)prop-2-enoic acid, Photoactive yellow protein Authors: Lin, C.-Y, Romei, M.G, Boxer, S.G. Deposit date: 2019-10-10 Release date: 2020-07-15 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (0.85 Å) Cite: Structural and spectroscopic characterization of photoactive yellow protein and photoswitchable fluorescent protein constructs containing heavy atoms. J Photochem Photobiol A Chem, 401, 2020
3PYP	PHOTOACTIVE YELLOW PROTEIN, CRYOTRAPPED EARLY LIGHT CYCLE INTERMEDIATE Descriptor: 4'-HYDROXYCINNAMIC ACID, PHOTOACTIVE YELLOW PROTEIN Authors: Genick, U.K, Soltis, S.M, Kuhn, P, Canestrelli, I.L, Getzoff, E.D. Deposit date: 1998-07-28 Release date: 1999-06-01 Last modified: 2023-08-09 Method: X-RAY DIFFRACTION (0.85 Å) Cite: Structure at 0.85 A resolution of an early protein photocycle intermediate. Nature, 392, 1998
6UMZ	Crystal structure of photoactive yellow protein (PYP); 3-Br-p-coumaric acid chromophore Descriptor: (2E)-3-(3-bromo-4-hydroxyphenyl)prop-2-enoic acid, Photoactive yellow protein Authors: Lin, C.-Y, Romei, M.G, Boxer, S.G. Deposit date: 2019-10-10 Release date: 2020-07-15 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (0.9 Å) Cite: Structural and spectroscopic characterization of photoactive yellow protein and photoswitchable fluorescent protein constructs containing heavy atoms. J Photochem Photobiol A Chem, 401, 2020
6UMY	Crystal structure of photoactive yellow protein (PYP); F96(4-IF) construct Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein Authors: Lin, C.-Y, Romei, M.G, Boxer, S.G. Deposit date: 2019-10-10 Release date: 2020-07-15 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (0.923 Å) Cite: Structural and spectroscopic characterization of photoactive yellow protein and photoswitchable fluorescent protein constructs containing heavy atoms. J Photochem Photobiol A Chem, 401, 2020
1OT6	CRYOTRAPPED CRYSTAL STRUCTURE OF THE E46Q MUTANT OF PHOTOACTIVE YELLOW PROTEIN UNDER CONTINUOUS ILLUMINATION AT 110K Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein Authors: Anderson, S, Crosson, S, Moffat, K. Deposit date: 2003-03-21 Release date: 2004-05-11 Last modified: 2021-10-27 Method: X-RAY DIFFRACTION (0.95 Å) Cite: Short hydrogen bonds in photoactive yellow protein. Acta Crystallogr.,Sect.D, 60, 2004
7SJJ	Crystal structure of photoactive yellow protein (PYP); F96oCNF construct Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein Authors: Weaver, J.B, Kirsh, J.M, Boxer, S.G. Deposit date: 2021-10-17 Release date: 2022-05-11 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (0.95 Å) Cite: Nitrile Infrared Intensities Characterize Electric Fields and Hydrogen Bonding in Protic, Aprotic, and Protein Environments. J.Am.Chem.Soc., 144, 2022
6UN2	Crystal structure of photoactive yellow protein (PYP); C69U construct (selenocysteine incorporation) Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein Authors: Lin, C.-Y, Romei, M.G, Boxer, S.G. Deposit date: 2019-10-10 Release date: 2020-07-15 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (0.97 Å) Cite: Structural and spectroscopic characterization of photoactive yellow protein and photoswitchable fluorescent protein constructs containing heavy atoms. J Photochem Photobiol A Chem, 401, 2020
7SPX	Crystal structure of photoactive yellow protein (PYP); F28oCNF construct Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein Authors: Weaver, J.B, Kirsh, J.M, Boxer, S.G. Deposit date: 2021-11-03 Release date: 2022-05-11 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (0.97 Å) Cite: Nitrile Infrared Intensities Characterize Electric Fields and Hydrogen Bonding in Protic, Aprotic, and Protein Environments. J.Am.Chem.Soc., 144, 2022
1OT9	CRYOTRAPPED STATE IN WILD TYPE PHOTOACTIVE YELLOW PROTEIN, INDUCED WITH CONTINUOUS ILLUMINATION AT 110K Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein Authors: Anderson, S, Crosson, S, Moffat, K. Deposit date: 2003-03-21 Release date: 2004-05-11 Last modified: 2019-07-24 Method: X-RAY DIFFRACTION (1 Å) Cite: Short hydrogen bonds in photoactive yellow protein. Acta Crystallogr.,Sect.D, 60, 2004
8DZY	Crystal structure of photoactive yellow protein (PYP); F96oCNF I49T construct Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein Authors: Weaver, J.B, Kirsh, J.M, Boxer, S.G. Deposit date: 2022-08-08 Release date: 2022-08-24 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.01 Å) Cite: Protic and Aprotic Interactions Systematically Perturbed and Mapped via MD and IR Spectroscopy To Be Published
8E09	Crystal structure of photoactive yellow protein (PYP); F96oCNF M100E construct Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein Authors: Kirsh, J.M, Weaver, J.B, Boxer, S.G. Deposit date: 2022-08-08 Release date: 2022-08-24 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.01 Å) Cite: Protic and Aprotic Interactions Systematically Perturbed and Mapped via MD and IR Spectroscopy To Be Published
8E1K	Crystal structure of photoactive yellow protein (PYP); F96oCNF M100Q construct Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein Authors: Kirsh, J.M, Weaver, J.B, Boxer, S.G. Deposit date: 2022-08-10 Release date: 2022-08-24 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.02 Å) Cite: Protic and Aprotic Interactions Systematically Perturbed and Mapped via MD and IR Spectroscopy To Be Published
8DZU	Crystal structure of photoactive yellow protein (PYP); F96oCNF M100H construct Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein Authors: Kirsh, J.M, Weaver, J.B, Boxer, S.G. Deposit date: 2022-08-08 Release date: 2022-08-24 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.04 Å) Cite: Protic and Aprotic Interactions Systematically Perturbed and Mapped via MD and IR Spectroscopy To Be Published
2GJ3	Crystal structure of the FAD-containing PAS domain of the protein NifL from Azotobacter vinelandii. Descriptor: ETHANOL, FLAVIN-ADENINE DINUCLEOTIDE, Nitrogen fixation regulatory protein, ... Authors: Key, J, Hefti, M, Purcell, E, Moffat, K. Deposit date: 2006-03-30 Release date: 2007-03-06 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.04 Å) Cite: Structure of the redox sensor domain of Azotobacter vinelandii NifL at atomic resolution: signaling, dimerization, and mechanism. Biochemistry, 46, 2007
7SPW	Crystal structure of photoactive yellow protein (PYP); F62oCNF construct Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein Authors: Weaver, J.B, Kirsh, J.M, Boxer, S.G. Deposit date: 2021-11-03 Release date: 2022-05-11 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.05 Å) Cite: Nitrile Infrared Intensities Characterize Electric Fields and Hydrogen Bonding in Protic, Aprotic, and Protein Environments. J.Am.Chem.Soc., 144, 2022
2QJ7	PYP ultra-high resolution of a bacterial photoreceptor Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein Authors: Coureux, P.D, Fan, Z.P, Stojanoff, V, Genick, U.K. Deposit date: 2007-07-06 Release date: 2008-05-20 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.05 Å) Cite: Picometer-scale conformational heterogeneity separates functional from nonfunctional States of a photoreceptor protein. Structure, 16, 2008
8E02	Crystal structure of photoactive yellow protein (PYP); F96oCNF T103V construct Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein Authors: Kirsh, J.M, Weaver, J.B, Boxer, S.G. Deposit date: 2022-08-08 Release date: 2022-08-24 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.09 Å) Cite: Protic and Aprotic Interactions Systematically Perturbed and Mapped via MD and IR Spectroscopy To Be Published
1OTB	WILD TYPE PHOTOACTIVE YELLOW PROTEIN, P63 AT 295K Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein Authors: Anderson, S, Crosson, S, Moffat, K. Deposit date: 2003-03-21 Release date: 2004-05-11 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (1.1 Å) Cite: Short hydrogen bonds in photoactive yellow protein. Acta Crystallogr.,Sect.D, 60, 2004
1OTA	E46Q MUTANT OF PHOTOACTIVE YELLOW PROTEIN, P63 AT 295K Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein Authors: Anderson, S, Crosson, S, Moffat, K. Deposit date: 2003-03-21 Release date: 2004-05-11 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (1.1 Å) Cite: Short hydrogen bonds in photoactive yellow protein. Acta Crystallogr.,Sect.D, 60, 2004
1F9I	CRYSTAL STRUCTURE OF THE PHOTOACTIVE YELLOW PROTEIN MUTANT Y42F Descriptor: 4'-HYDROXYCINNAMIC ACID, PHOTOACTIVE YELLOW PROTEIN Authors: Brudler, R, Meyer, T.E, Genick, U.K, Tollin, G, Getzoff, E.D. Deposit date: 2000-07-10 Release date: 2000-07-21 Last modified: 2021-11-03 Method: X-RAY DIFFRACTION (1.1 Å) Cite: Coupling of hydrogen bonding to chromophore conformation and function in photoactive yellow protein. Biochemistry, 39, 2000
8DZX	Crystal structure of photoactive yellow protein (PYP); F96oCNF M100K construct Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein Authors: Kirsh, J.M, Weaver, J.B, Boxer, S.G. Deposit date: 2022-08-08 Release date: 2022-08-24 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.14 Å) Cite: Protic and Aprotic Interactions Systematically Perturbed and Mapped via MD and IR Spectroscopy To Be Published
1ODV	Photoactive yellow protein 1-25 deletion mutant Descriptor: 4'-HYDROXYCINNAMIC ACID, PHOTOACTIVE YELLOW PROTEIN Authors: Vreede, J, Van Der horst, M.A, Hellingwerf, K.J, Crielaard, W, Van Aalten, D.M.F. Deposit date: 2003-03-14 Release date: 2003-03-18 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.14 Å) Cite: Pas Domains.Common Structure and Common Flexibility J.Biol.Chem., 278, 2003
1F98	CRYSTAL STRUCTURE OF THE PHOTOACTIVE YELLOW PROTEIN MUTANT T50V Descriptor: 4'-HYDROXYCINNAMIC ACID, PHOTOACTIVE YELLOW PROTEIN Authors: Brudler, R, Meyer, T.E, Genick, U.K, Tollin, G, Getzoff, E.D. Deposit date: 2000-07-07 Release date: 2000-07-21 Last modified: 2021-11-03 Method: X-RAY DIFFRACTION (1.15 Å) Cite: Coupling of hydrogen bonding to chromophore conformation and function in photoactive yellow protein. Biochemistry, 39, 2000
1KOU	Crystal Structure of the Photoactive Yellow Protein Reconstituted with Caffeic Acid at 1.16 A Resolution Descriptor: CAFFEIC ACID, N-BUTANE, PHOTOACTIVE YELLOW PROTEIN Authors: van Aalten, D.M.F, Crielaard, W, Hellingwerf, K.J, Joshua-Tor, L. Deposit date: 2001-12-22 Release date: 2002-04-03 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (1.16 Å) Cite: Structure of the photoactive yellow protein reconstituted with caffeic acid at 1.16 A resolution. Acta Crystallogr.,Sect.D, 58, 2002

 

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