PDB: 245 resultsInfo pagesStatus searchChemie searchBIRD

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1F62	WSTF-PHD Descriptor: TRANSCRIPTION FACTOR WSTF, ZINC ION Authors: Pascual, J, Martinez-Yamout, M, Dyson, H.J, Wright, P.E. Deposit date: 2000-06-19 Release date: 2000-12-27 Last modified: 2019-11-06 Method: SOLUTION NMR Cite: Structure of the PHD zinc finger from human Williams-Beuren syndrome transcription factor. J.Mol.Biol., 304, 2000
1FP0	SOLUTION STRUCTURE OF THE PHD DOMAIN FROM THE KAP-1 COREPRESSOR Descriptor: KAP-1 COREPRESSOR, ZINC ION Authors: Capili, A.D, Schultz, D.C, Rauscher III, F.J, Borden, K.L.B. Deposit date: 2000-08-29 Release date: 2001-01-24 Last modified: 2022-02-23 Method: SOLUTION NMR Cite: Solution structure of the PHD domain from the KAP-1 corepressor: structural determinants for PHD, RING and LIM zinc-binding domains. EMBO J., 20, 2001
1MM3	Solution structure of the 2nd PHD domain from Mi2b with C-terminal loop replaced by corresponding loop from WSTF Descriptor: Mi2-beta(Chromodomain helicase-DNA-binding protein 4) and transcription factor WSTF, ZINC ION Authors: Kwan, A.H.Y, Gell, D.A, Verger, A, Crossley, M, Matthews, J.M, Mackay, J.P. Deposit date: 2002-09-02 Release date: 2003-07-22 Last modified: 2022-02-23 Method: SOLUTION NMR Cite: Engineering a Protein Scaffold from a PHD Finger structure, 11, 2003
1MM2	Solution structure of the 2nd PHD domain from Mi2b Descriptor: Mi2-beta, ZINC ION Authors: Kwan, A.H.Y, Gell, D.A, Verger, A, Crossley, M, Matthews, J.M, Mackay, J.P. Deposit date: 2002-09-02 Release date: 2003-07-22 Last modified: 2022-02-23 Method: SOLUTION NMR Cite: Engineering a Protein Scaffold from a PHD Finger structure, 11, 2003
1WE9	Solution structure of PHD domain in nucleic acid binding protein-like NP_197993 Descriptor: PHD finger family protein, ZINC ION Authors: He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2004-05-24 Release date: 2004-11-24 Last modified: 2022-03-02 Method: SOLUTION NMR Cite: Solution structure of PHD domain in nucleic acid binding protein-like NP_197993 To be Published
1WEE	Solution structure of PHD domain in PHD finger family protein Descriptor: PHD finger family protein, ZINC ION Authors: He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2004-05-24 Release date: 2004-11-24 Last modified: 2022-03-02 Method: SOLUTION NMR Cite: Solution structure of PHD domain in PHD finger family protein To be Published
1WEP	Solution structure of PHD domain in PHF8 Descriptor: PHF8, ZINC ION Authors: He, F, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Muto, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2004-05-25 Release date: 2004-11-25 Last modified: 2022-03-02 Method: SOLUTION NMR Cite: Solution structure of PHD domain in protein AA017385 To be Published
1WEM	Solution structure of PHD domain in death inducer-obliterator 1(DIO-1) Descriptor: Death associated transcription factor 1, ZINC ION Authors: He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2004-05-25 Release date: 2004-11-25 Last modified: 2022-03-02 Method: SOLUTION NMR Cite: Solution structure of PHD domain in death inducer-obliterator 1(DIO-1) To be Published
1WEV	Solution structure of PHD domain in protein NP_082203 Descriptor: RIKEN cDNA 1110020M19, ZINC ION Authors: He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2004-05-25 Release date: 2004-11-25 Last modified: 2022-03-02 Method: SOLUTION NMR Cite: Solution structure of PHD domain in protein NP_082203 To be Published
1XWH	NMR structure of the first phd finger of autoimmune regulator protein (AIRE1): insights into apeced Descriptor: Autoimmune regulator, ZINC ION Authors: Bottomley, M.J, Stier, G, Krasotkina, J, Legube, G, Simon, B, Akhtar, A, Sattler, M, Musco, G. Deposit date: 2004-11-01 Release date: 2005-01-25 Last modified: 2022-03-02 Method: SOLUTION NMR Cite: NMR structure of the first PHD finger of autoimmune regulator protein (AIRE1). Insights into autoimmune polyendocrinopathy-candidiasis-ectodermal dystrophy (APECED) disease J.Biol.Chem., 280, 2005
2F6N	Crystal structure of PHD finger-linker-bromodomain fragment of human BPTF in the free form Descriptor: ZINC ION, bromodomain PHD finger transcription factor Authors: Li, H, Patel, D.J. Deposit date: 2005-11-29 Release date: 2006-07-11 Last modified: 2017-10-18 Method: X-RAY DIFFRACTION (2 Å) Cite: Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF. Nature, 442, 2006
2F6J	Crystal structure of PHD finger-linker-bromodomain fragment of human BPTF in the H3(1-15)K4me3 bound state Descriptor: ZINC ION, bromodomain PHD finger transcription factor, histone H3, ... Authors: Li, H, Patel, D.J. Deposit date: 2005-11-29 Release date: 2006-07-11 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2 Å) Cite: Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF. Nature, 442, 2006
2FSA	Crystal structure of PHD finger-linker-bromodomain fragment of human BPTF in the H3(1-15)K4ME2 bound state Descriptor: Histone H3(1-15)K4me2 peptide, ZINC ION, bromodomain PHD finger transcription factor Authors: Li, H, Patel, D.J. Deposit date: 2006-01-21 Release date: 2006-07-11 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF. Nature, 442, 2006
2FUI	NMR solution structure of PHD finger fragment of human BPTF in free state Descriptor: bromodomain PHD finger transcription factor Authors: Ilin, S, Patel, D.J. Deposit date: 2006-01-26 Release date: 2006-07-11 Last modified: 2022-03-09 Method: SOLUTION NMR Cite: Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF. Nature, 442, 2006
2FUU	NMR solution structure of the PHD domain from the human BPTF in complex with H3(1-15)K4me3 peptide Descriptor: Histone H3, ZINC ION, bromodomain PHD finger transcription factor Authors: Ilin, S, Patel, D.J. Deposit date: 2006-01-27 Release date: 2006-07-11 Last modified: 2022-03-09 Method: SOLUTION NMR Cite: Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF. Nature, 442, 2006
2DX8	Crystal Structure Analysis of the PHD domain of the Transcription Coactivator Pygophus Descriptor: Pygopus homolog 1, ZINC ION Authors: Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-08-24 Release date: 2007-05-15 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Crystal Structure Analysis of the PHD Domain of the Transcription Coactivator Pygopus To be Published
2E6S	Solution structure of the PHD domain in RING finger protein 107 Descriptor: E3 ubiquitin-protein ligase UHRF2, ZINC ION Authors: Kadirvel, S, He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-12-28 Release date: 2007-07-03 Last modified: 2022-03-09 Method: SOLUTION NMR Cite: Solution structure of the PHD domain in RING finger protein 107 To be Published
2E6R	Solution structure of the PHD domain in SmcY protein Descriptor: Jumonji/ARID domain-containing protein 1D, ZINC ION Authors: Kadirvel, S, He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-12-28 Release date: 2007-07-03 Last modified: 2022-03-09 Method: SOLUTION NMR Cite: Solution structure of the PHD domain in SmcY protein To be Published
2PUY	Crystal Structure of the BHC80 PHD finger Descriptor: Histone H3, PHD finger protein 21A, ZINC ION Authors: Horton, J.R, Cheng, X, Collins, R.E. Deposit date: 2007-05-09 Release date: 2007-08-14 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.43 Å) Cite: Recognition of unmethylated histone H3 lysine 4 links BHC80 to LSD1-mediated gene repression. Nature, 448, 2007
2YSM	Solution structure of the second and third PHD domain from Histone-lysine N-methyltransferase 2C (KMT2C/MLL3) Descriptor: Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog, ZINC ION Authors: Qin, X.R, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-04-03 Release date: 2007-10-09 Last modified: 2018-03-21 Method: SOLUTION NMR Cite: Solution structure of the first and second PHD domain from Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog To be Published
2RI7	Crystal structure of PHD finger-linker-bromodomain Y17E mutant from human BPTF in the H3(1-9)K4ME2 bound state Descriptor: GLYCEROL, ISOPROPYL ALCOHOL, Nucleosome-remodeling factor subunit BPTF, ... Authors: Li, H, Patel, D.J. Deposit date: 2007-10-10 Release date: 2007-12-11 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.45 Å) Cite: Structural Basis for Lower Lysine Methylation State-Specific Readout by MBT Repeats of L3MBTL1 and an Engineered PHD Finger. Mol.Cell, 28, 2007
2YQL	Solution structure of the PHD domain in PHD finger protein 21A Descriptor: PHD finger protein 21A, ZINC ION Authors: He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-03-30 Release date: 2008-03-18 Last modified: 2022-03-16 Method: SOLUTION NMR Cite: Solution structure of the PHD domain in PHD finger protein 21A To be Published
2YT5	Solution structure of the PHD domain of Metal-response element-binding transcription factor 2 Descriptor: Metal-response element-binding transcription factor 2, ZINC ION Authors: Masuda, K, Muto, Y, Isono, K, Watanabe, S, Harada, T, Kigawa, T, Koseki, H, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-04-05 Release date: 2008-04-15 Last modified: 2022-03-16 Method: SOLUTION NMR Cite: Solution structure of the PHD domain of Metal-response element-binding transcription factor 2 To be Published
2YYR	Structural analysis of PHD domain of Pygopus complexed with trimethylated histone H3 peptide Descriptor: H3K4Me3 peptide, Pygopus homolog 1, ZINC ION Authors: Nakamura, Y, Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-05-01 Release date: 2008-05-06 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural analysis of PHD domain of Pygopus complexed with trimethylated histone H3 peptide To be Published
2RO1	NMR Solution Structures of Human KAP1 PHD finger-bromodomain Descriptor: Transcription intermediary factor 1-beta, ZINC ION Authors: Zeng, L, Yap, K.L, Ivanov, A.V, Wang, X, Mujtaba, S, Plotnikova, O, Rauscher, F.J. Deposit date: 2008-03-04 Release date: 2008-05-20 Last modified: 2022-03-16 Method: SOLUTION NMR Cite: Structural insights into human KAP1 PHD finger-bromodomain and its role in gene silencing Nat.Struct.Mol.Biol., 15, 2008

 

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