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7XKS
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BU of 7xks by Molmil
Crystal structure of an alkaline pectate lyase from Bacillus clausii
Descriptor: CALCIUM ION, DI(HYDROXYETHYL)ETHER, Pectate lyase
Authors:Zhou, C, Zheng, Y.Y, Liu, W.D, Ma, Y.
Deposit date:2022-04-20
Release date:2023-03-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Structure of an Alkaline Pectate Lyase and Rational Engineering with Improved Thermo-Alkaline Stability for Efficient Ramie Degumming.
Int J Mol Sci, 24, 2022
7BBV
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BU of 7bbv by Molmil
Pectate lyase B from Verticillium dahliae
Descriptor: CALCIUM ION, DI(HYDROXYETHYL)ETHER, Pectate lyase B, ...
Authors:Safran, J, Habrylo, O, Bouckaert, J, Pau Roblot, C, Senechal, F, Pelloux, J.
Deposit date:2020-12-18
Release date:2022-07-13
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:The specificity of pectate lyase VdPelB from Verticilium dahliae is highlighted by structural, dynamical and biochemical characterizations.
Int.J.Biol.Macromol., 231, 2023
6FI2
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BU of 6fi2 by Molmil
VexL: A periplasmic depolymerase provides new insight into ABC transporter-dependent secretion of bacterial capsular polysaccharides
Descriptor: 2-acetamido-2-deoxy-alpha-D-galactopyranuronic acid-(1-4)-3-O-acetyl-2-acetamido-2-deoxy-alpha-D-galactopyranuronic acid-(1-4)-3-O-acetyl-2-acetamido-2-deoxy-alpha-D-galactopyranuronic acid, MALONATE ION, VexL
Authors:Naismith, J.H, McMahon, S.A, Le Bas, A, Liston, S.D, Whitfield, C.
Deposit date:2018-01-16
Release date:2018-05-02
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Periplasmic depolymerase provides insight into ABC transporter-dependent secretion of bacterial capsular polysaccharides.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5X2I
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BU of 5x2i by Molmil
Polygalacturonate Lyase by Fusing with a Self-assembling Amphipathic Peptide
Descriptor: CALCIUM ION, CHLORIDE ION, Pectate lyase
Authors:Zhao, W.X.
Deposit date:2017-01-31
Release date:2018-08-08
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Polygalacturonate Lyase by Fusing with a Self-assembling Amphipathic Peptide
To be published
5GT5
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BU of 5gt5 by Molmil
Structural basis of the specific activity and thermostability of pectate lyase (pelN) from Paenibacillus sp. 0602
Descriptor: Pectate lyase
Authors:Zhou, Z.P, Liu, Y, Song, J.N.
Deposit date:2016-08-18
Release date:2017-10-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.449 Å)
Cite:Structure-based engineering of a pectate lyase with improved specific activity for ramie degumming.
Appl. Microbiol. Biotechnol., 101, 2017
5AMV
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BU of 5amv by Molmil
Structural insights into the loss of catalytic competence in pectate lyase at low pH
Descriptor: ACETATE ION, CALCIUM ION, GLYCEROL, ...
Authors:Teixeira, S.C.M, Ali, S, Sondergaard, C, Pickersgill, R.
Deposit date:2015-09-02
Release date:2015-09-30
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Structural Insights Into the Loss of Catalytic Competence in Pectate Lyase Activity at Low Ph.
FEBS Lett., 589, 2015
4HWV
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BU of 4hwv by Molmil
Structure of Pectate Lyase from Acidovorax avenae subsp citrulli
Descriptor: CALCIUM ION, Pectate lyase/Amb allergen
Authors:Qun, T, Liqun, Z.
Deposit date:2012-11-09
Release date:2013-10-23
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:1.37 angstrom crystal structure of pathogenic factor pectate lyase from Acidovorax citrulli.
Proteins, 81, 2013
3ZSC
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BU of 3zsc by Molmil
Catalytic function and substrate recognition of the pectate lyase from Thermotoga maritima
Descriptor: 4-deoxy-beta-L-threo-hex-4-enopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid, GLYCEROL, PECTATE TRISACCHARIDE-LYASE, ...
Authors:McDonough, M.A, Thymark, M, Frisner, H, Hotchkiss, A, Sonksen, C, Bjornvad, M, Johansen, K.S, Larsen, S.
Deposit date:2011-06-24
Release date:2012-07-11
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Catalytic Function and Substrate Recognition of the Pectate Lyase from Thermotoga Maritima
To be Published
3VMW
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BU of 3vmw by Molmil
Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate
Descriptor: Pectate lyase, SULFATE ION, alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid
Authors:Zheng, Y, Huang, C.H, Liu, W, Ko, T.P, Xue, Y, Zhou, C, Zhang, G, Guo, R.T, Ma, Y.
Deposit date:2011-12-17
Release date:2012-07-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure and substrate-binding mode of a novel pectate lyase from alkaliphilic Bacillus sp. N16-5.
Biochem.Biophys.Res.Commun., 420, 2012
3VMV
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BU of 3vmv by Molmil
Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165
Descriptor: Pectate lyase, SULFATE ION
Authors:Zheng, Y, Huang, C.H, Liu, W, Ko, T.P, Xue, Y, Zhou, C, Zhang, G, Guo, R.T, Ma, Y.
Deposit date:2011-12-16
Release date:2012-07-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Crystal structure and substrate-binding mode of a novel pectate lyase from alkaliphilic Bacillus sp. N16-5.
Biochem.Biophys.Res.Commun., 420, 2012
3KRG
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BU of 3krg by Molmil
Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase
Descriptor: COBALT (II) ION, GLYCEROL, Pectate lyase, ...
Authors:Pickersgill, R.W, To, T.T.
Deposit date:2009-11-18
Release date:2010-02-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase
Biochemistry, 49, 2010
2QY1
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BU of 2qy1 by Molmil
pectate lyase A31G/R236F from Xanthomonas campestris
Descriptor: PHOSPHATE ION, Pectate lyase II
Authors:Garron, M.L, Shaya, D.
Deposit date:2007-08-13
Release date:2008-02-26
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Improvement of the thermostability and activity of a pectate lyase by single amino acid substitutions, using a strategy based on melting-temperature-guided sequence alignment.
Appl.Environ.Microbiol., 74, 2008
2QXZ
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BU of 2qxz by Molmil
pectate lyase R236F from Xanthomonas campestris
Descriptor: PHOSPHATE ION, pectate lyase II
Authors:Garron, M.L, Shaya, D.
Deposit date:2007-08-13
Release date:2008-03-04
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Improvement of the thermostability and activity of a pectate lyase by single amino acid substitutions, using a strategy based on melting-temperature-guided sequence alignment.
Appl.Environ.Microbiol., 74, 2008
2QX3
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BU of 2qx3 by Molmil
Structure of pectate lyase II from Xanthomonas campestris pv. campestris str. ATCC 33913
Descriptor: PHOSPHATE ION, Pectate lyase II
Authors:Garron, M.L, Shaya, D.
Deposit date:2007-08-10
Release date:2008-03-04
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:A seductive method to improve the thermostability and activity of an enzyme
To be Published
2PEC
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BU of 2pec by Molmil
THE REFINED THREE-DIMENSIONAL STRUCTURE OF PECTATE LYASE C FROM ERWINIA CHRYSANTHEMI AT 2.2 ANGSTROMS RESOLUTION: IMPLICATIONS FOR AN ENZYMATIC MECHANISM
Descriptor: PECTATE LYASE C
Authors:Yoder, M.D, Jurnak, F.
Deposit date:1994-08-08
Release date:1995-02-14
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Protein motifs. 3. The parallel beta helix and other coiled folds.
FASEB J., 9, 1995
2O1D
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BU of 2o1d by Molmil
Pectate lyase bound to trisaccharide
Descriptor: CALCIUM ION, Pectate lyase, alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid
Authors:Pickersgill, R.W, Seyedarabi, A.
Deposit date:2006-11-28
Release date:2007-11-20
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase.
Biochemistry, 49, 2010
2O17
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BU of 2o17 by Molmil
Pectate lyase bound to hexasaccharide
Descriptor: CALCIUM ION, Pectate lyase, alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid
Authors:Pickersgill, R.W, Seyedarabi, A.
Deposit date:2006-11-28
Release date:2007-11-20
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase.
Biochemistry, 49, 2010
2O0W
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BU of 2o0w by Molmil
Pectate lyase bound to hexasaccharide compound IV
Descriptor: CALCIUM ION, Pectate lyase
Authors:Pickersgill, R.W, Seyedarabi, A.
Deposit date:2006-11-28
Release date:2007-11-20
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and thermodynamic insights into the mechanism of pectate lyase
To be Published
2O0V
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BU of 2o0v by Molmil
Pectate lyase bound to hexasaccharide compound III
Descriptor: CALCIUM ION, Pectate lyase, alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid
Authors:Pickersgill, R.W, Seyedarabi, A.
Deposit date:2006-11-28
Release date:2007-11-20
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase.
Biochemistry, 49, 2010
2O04
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BU of 2o04 by Molmil
Pectate lyase bound to hexasaccharide compound II
Descriptor: CALCIUM ION, Pectate lyase, alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid
Authors:Pickersgill, R.W, Seyedarabi, A.
Deposit date:2006-11-27
Release date:2007-11-20
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase.
Biochemistry, 49, 2010
2NZM
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BU of 2nzm by Molmil
Hexasaccharide I bound to Bacillus subtilis pectate lyase
Descriptor: CALCIUM ION, Pectate lyase, alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid
Authors:Pickersgill, R.W, Seyedarabi, A.
Deposit date:2006-11-24
Release date:2007-11-20
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase.
Biochemistry, 49, 2010
2EWE
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BU of 2ewe by Molmil
Crystal structure of Pectate Lyase C R218K mutant in complex with pentagalacturonic acid
Descriptor: CALCIUM ION, Pectate lyase C, alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid
Authors:Scavetta, R.D, Jurnak, F.
Deposit date:2005-11-02
Release date:2005-11-15
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of a Plant Cell Wall Fragment Complexed to Pectate Lyase C
Plant Cell, 11, 1999
2BSP
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BU of 2bsp by Molmil
BACILLUS SUBTILIS PECTATE LYASE R279K MUTANT
Descriptor: CALCIUM ION, PROTEIN (PECTATE LYASE)
Authors:Pickersgill, R.
Deposit date:1998-07-31
Release date:1998-08-12
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Conserved Arginine Proximal to the Essential Calcium of Bacillus Subtilis Pectate Lyase Stabilizes the Transition State
To be Published
1VBL
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BU of 1vbl by Molmil
Structure of the thermostable pectate lyase PL 47
Descriptor: CALCIUM ION, pectate lyase 47
Authors:Nakaniwa, T, Tada, T, Yamaguchi, A, Kitatani, T, Takao, M, Sakai, T, Nishimura, K.
Deposit date:2004-02-27
Release date:2005-04-19
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Structural Basis for Thermostability of Pectate Lyase from Bacillus sp. TS 47
To be Published
1QCX
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BU of 1qcx by Molmil
PECTIN LYASE B
Descriptor: PECTIN LYASE B
Authors:Vitali, J, Jurnak, F.
Deposit date:1999-05-13
Release date:1999-05-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The tree-dimensional structure of aspergillus niger pectin lyase B at 1.7-A resolution.
Plant Physiol., 116, 1998

 

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