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1B03
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1b03
SOLUTION STRUCTURE OF THE ANTIBODY-BOUND HIV-1IIIB V3 PEPTIDE
Descriptor:P1053 (ANTIBODY-BOUND HIV-1IIIB V3 PEPTIDE)
Authors:Tugarinov, V., Zvi, A., Levy, R., Anglister, J.
Deposit date:1998-11-17
Release date:1998-11-25
Modification date:2009-02-24
Method:SOLUTION NMR
Cite:A cis proline turn linking two beta-hairpin strands in the solution structure of an antibody-bound HIV-1IIIB V3 peptide.
Nat.Struct.Biol., 6, 1999
1CE4
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1ce4
CONFORMATIONAL MODEL FOR THE CONSENSUS V3 LOOP OF THE ENVELOPE PROTEIN GP120 OF HIV-1
Descriptor:V3 LOOP OF HIV-1 ENVELOPE PROTEIN
Authors:Vranken, W.F., Fant, F., Budesinsky, M., Borremans, F.A.M.
Deposit date:1999-03-15
Release date:1999-03-18
Modification date:2009-02-24
Method:SOLUTION NMR
Cite:The complete Consensus V3 loop peptide of the envelope protein gp120 of HIV-1 shows pronounced helical character in solution.
FEBS Lett., 374, 1995
1MEQ
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1meq
HIV GP120 C5
Descriptor:Exterior Membrane Glycoprotein (GP120)
Authors:Caffrey, M., Jacobs, A., Guilhaudis, L.
Deposit date:2002-08-08
Release date:2002-12-11
Modification date:2009-02-24
Method:SOLUTION NMR
Cite:Solution Structure of the HIV gp120 C5 Domain
Eur.J.Biochem., 269, 2002
1NAK
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1nak
IGG1 FAB FRAGMENT (83.1) COMPLEX WITH 16-RESIDUE PEPTIDE (RESIDUES 304-321 OF HIV-1 GP120 (MN ISOLATE))
Descriptor:Fab 83.1 - light chain, Fab 83.1 - heavy chain, Peptide MP1
Authors:Stanfield, R.L., Ghiara, J.B., Saphire, E.O., Profy, A.T., Wilson, I.A.
Deposit date:2002-11-27
Release date:2003-11-18
Modification date:2014-09-03
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Recurring conformation of the human immunodeficiency virus type 1 gp120 V3 loop.
Virology, 315, 2003
1NIZ
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1niz
NMR STRUCTURE OF A V3 (MN ISOLATE) PEPTIDE BOUND TO 447-52D, A HUMAN HIV-1 NEUTRALIZING ANTIBODY
Descriptor:Exterior membrane glycoprotein(GP120)
Authors:Sharon, M., Kessler, N., Levy, R., Zolla-Pazner, S., Gorlach, M., Anglister, J.
Deposit date:2002-12-30
Release date:2003-02-25
Modification date:2009-02-24
Method:SOLUTION NMR
Cite:Alternative Conformations of HIV-1 V3 Loops Mimic beta Hairpins in Chemokines, Suggesting a Mechanism for Coreceptor Selectivity.
Structure, 11, 2003
1NJ0
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1nj0
NMR STRUCTURE OF A V3 (MN ISOLATE) PEPTIDE BOUND TO 447-52D, A HUMAN HIV-1 NEUTRALIZING ANTIBODY
Descriptor:Exterior membrane glycoprotein(GP120)
Authors:Sharon, M., Kessler, N., Levy, R., Zolla-Pazner, S., Gorlach, M., Anglister, J.
Deposit date:2002-12-30
Release date:2003-02-25
Modification date:2009-02-24
Method:SOLUTION NMR
Cite:Alternative Conformations of HIV-1 V3 Loops Mimic beta Hairpins in Chemokines, Suggesting a Mechanism for Coreceptor Selectivity.
Structure, 11, 2003
1Q1J
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1q1j
CRYSTAL STRUCTURE ANALYSIS OF ANTI-HIV-1 FAB 447-52D IN COMPLEX WITH V3 PEPTIDE
Descriptor:Fab 447-52D, light and heavy chains/gp120 V3 peptide complex
Authors:Stanfield, R.L., Gorny, M.K., Williams, C., Zolla-Pazner, S., Wilson, I.A.
Deposit date:2003-07-21
Release date:2004-02-17
Modification date:2009-02-24
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural rationale for the broad neutralization of HIV-1 by human monoclonal antibody 447-52D.
Structure, 12, 2004
1U6U
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1u6u
NMR STRUCTURE OF A V3 (IIIB ISOLATE) PEPTIDE BOUND TO 447-52D, A HUMAN HIV-1 NEUTRALIZING ANTIBODY
Descriptor:V3 peptide
Authors:Rosen, O., Chill, J., Sharon, M., Kessler, N., Mester, B., Zolla-Pazner, S., Anglister, J.
Deposit date:2004-08-02
Release date:2005-04-05
Modification date:2009-02-24
Method:SOLUTION NMR
Cite:Induced fit in HIV-neutralizing antibody complexes: evidence for alternative conformations of the gp120 V3 loop and the molecular basis for broad neutralization.
Biochemistry, 44, 2005
1U6V
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1u6v
NMR STRUCTURE OF A V3 (IIIB ISOLATE) PEPTIDE BOUND TO 447-52D, A HUMAN HIV-1 NEUTRALIZING ANTIBODY
Descriptor:V3 peptide
Authors:Rosen, O., Chill, J., Sharon, M., Kessler, N., Mester, B., Zolla-Pazner, S., Anglister, J.
Deposit date:2004-08-02
Release date:2005-04-05
Modification date:2009-02-24
Method:SOLUTION NMR
Cite:Induced fit in HIV-neutralizing antibody complexes: evidence for alternative conformations of the gp120 V3 loop and the molecular basis for broad neutralization.
Biochemistry, 44, 2005
1YYL
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1yyl
CRYSTAL STRUCTURE OF CD4M33, A SCORPION-TOXIN MIMIC OF CD4, IN COMPLEX WITH HIV-1 YU2 GP120 ENVELOPE GLYCOPROTEIN AND ANTI-HIV-1 ANTIBODY 17B
Descriptor:HIV-1 YU2 gp120, antibody 17b light chain, antibody 17b heavy chain, CD4M33, scorpion-toxin mimic of CD4
Authors:Huang, C.C., Stricher, F., Martin, L., Decker, J.M., Majeed, S., Barthe, P., Hendrickson, W.A., Robinson, J., Roumestand, C., Sodroski, J., Wyatt, R., Shaw, G.M., Vita, C., Kwong, P.D.
Deposit date:2005-02-25
Release date:2005-05-03
Modification date:2011-07-13
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Scorpion-toxin mimics of CD4 in complex with human immunodeficiency virus gp120 crystal structures, molecular mimicry, and neutralization breadth.
Structure, 13, 2005
1YYM
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1yym
CRYSTAL STRUCTURE OF F23, A SCORPION-TOXIN MIMIC OF CD4, IN COMPLEX WITH HIV-1 YU2 GP120 ENVELOPE GLYCOPROTEIN AND ANTI-HIV-1 ANTIBODY 17B
Descriptor:Exterior membrane glycoprotein(GP120), antibody 17b light chain , antibody 17b heavy chain, F23, scorpion-toxin mimic of CD4
Authors:Huang, C.C., Stricher, F., Martin, L., Decker, J.M., Majeed, S., Barthe, P., Hendrickson, W.A., Robinson, J., Roumestand, C., Sodroski, J., Wyatt, R., Shaw, G.M., Vita, C., Kwong, P.D.
Deposit date:2005-02-25
Release date:2005-05-03
Modification date:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Scorpion-toxin mimics of CD4 in complex with human immunodeficiency virus gp120 crystal structures, molecular mimicry, and neutralization breadth.
Structure, 13, 2005
2B0S
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2b0s
CRYSTAL STRUCTURE ANALYSIS OF ANTI-HIV-1 V3 FAB 2219 IN COMPLEX WITH MN PEPTIDE
Descriptor:Fab 2219, light and heavy chains/fragment of Exterior membrane glycoprotein GP120
Authors:Stanfield, R.L., Gorny, M.K., Zolla-Pazner, S., Wilson, I.A.
Deposit date:2005-09-14
Release date:2006-07-04
Modification date:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of human immunodeficiency virus type 1 (HIV-1) neutralizing antibody 2219 in complex with three different V3 peptides reveal a new binding mode for HIV-1 cross-reactivity.
J.Virol., 80, 2006
2B1A
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2b1a
CRYSTAL STRUCTURE ANALYSIS OF ANTI-HIV-1 V3 FAB 2219 IN COMPLEX WITH UG1033 PEPTIDE
Descriptor:Fab 2219, light and heavy chains/fragment of Exterior membrane glycoprotein GP120
Authors:Stanfield, R.L., Gorny, M.K., Zolla-Pazner, S., Wilson, I.A.
Deposit date:2005-09-15
Release date:2006-07-04
Modification date:2011-07-13
Method:X-RAY DIFFRACTION (2.348 Å)
Cite:Crystal structures of human immunodeficiency virus type 1 (HIV-1) neutralizing antibody 2219 in complex with three different V3 peptides reveal a new binding mode for HIV-1 cross-reactivity.
J.Virol., 80, 2006
2BF1
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2bf1
STRUCTURE OF AN UNLIGANDED AND FULLY-GLYCOSYLATED SIV GP120 ENVELOPE GLYCOPROTEIN
Descriptor:EXTERIOR MEMBRANE GLYCOPROTEIN GP120
Authors:Chen, B., Vogan, E.M., Gong, H., Skehel, J.J., Wiley, D.C., Harrison, S.C.
Deposit date:2004-12-02
Release date:2005-02-17
Modification date:2009-02-24
Method:X-RAY DIFFRACTION (4 Å)
Cite:Structure of an Unliganded Simian Immunodeficiency Virus Gp120 Core
Nature, 433, 2005
2I60
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2i60
CRYSTAL STRUCTURE OF [PHE23]M47, A SCORPION-TOXIN MIMIC OF CD4, IN COMPLEX WITH HIV-1 YU2 GP120 ENVELOPE GLYCOPROTEIN AND ANTI-HIV-1 ANTIBODY 17B
Descriptor:EXTERIOR MEMBRANE GLYCOPROTEIN(GP120), ANTIBODY 17B LIGHT CHAIN, ANTIBODY 17B HEAVY CHAIN, 27 residue peptide
Authors:Huang, C.-C., Kwong, P.D.
Deposit date:2006-08-26
Release date:2006-10-10
Modification date:2012-06-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Combinatorial optimization of a CD4-mimetic miniprotein and cocrystal structures with HIV-1 gp120 envelope glycoprotein.
J.Mol.Biol., 382, 2008
2QSC
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2qsc
CRYSTAL STRUCTURE ANALYSIS OF ANTI-HIV-1 V3-FAB F425-B4E8 IN COMPLEX WITH A V3-PEPTIDE
Descriptor:Fab F425-B4e8, Light chain, Fab F425-B4e8, Heavy chain, Envelope glycoprotein gp120
Authors:Bell, C.H., Schiefner, A., Stanfield, R.L., Wilson, I.A.
Deposit date:2007-07-30
Release date:2008-01-15
Modification date:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of antibody F425-B4e8 in complex with a V3 peptide reveals a new binding mode for HIV-1 neutralization.
J.Mol.Biol., 375, 2008
3FUS
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3fus
IMPROVED STRUCTURE OF THE UNLIGANDED SIMIAN IMMUNODEFICIENCY VIRUS GP120 CORE
Descriptor:EXTERIOR MEMBRANE GLYCOPROTEIN GP120
Authors:Chen, X., Poon, B., Wang, Q., Ma, J.
Deposit date:2009-01-14
Release date:2009-06-30
Modification date:2011-10-05
Method:X-RAY DIFFRACTION (4 Å)
Cite:Structural improvement of unliganded simian immunodeficiency virus gp120 core by normal-mode-based X-ray crystallographic refinement.
Acta Crystallogr.,Sect.D, 65, 2009
3GO1
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3go1
CRYSTAL STRUCTURE OF ANTI-HIV-1 FAB 268-D IN COMPLEX WITH V3 PEPTIDE MN
Descriptor:Crystal structure of anti-HIV-1 Fab 268-D in complex with V3 peptide MN
Authors:Kong, X.P., Burke, V.J.
Deposit date:2009-03-18
Release date:2010-06-23
Modification date:2010-08-18
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Conserved structural elements in the V3 crown of HIV-1 gp120.
Nat.Struct.Mol.Biol., 17, 2010
3IDX
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3idx
CRYSTAL STRUCTURE OF HIV-GP120 CORE IN COMPLEX WITH CD4-BINDING SITE ANTIBODY B13, SPACE GROUP C222
Descriptor:HIV-1 HxBc2 gp120 core, Fab b13 heavy chain, Fab b13 light chain
Authors:Chen, L., Kwon, Y.D., Zhou, T., Wu, X., O'Dell, S., Cavacini, L., Hessell, A.J., Pancera, M., Tang, M., Xu, L., Yang, Z.Y., Zhang, M.Y., Arthos, J., Burton, D.R., Dimitrov, D.S., Nabel, G.J., Posner, M., Sodroski, J., Wyatt, R., Mascola, J.R., Kwong, P.D.
Deposit date:2009-07-22
Release date:2009-11-17
Modification date:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis of immune evasion at the site of CD4 attachment on HIV-1 gp120.
Science, 326, 2009
3IDY
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3idy
CRYSTAL STRUCTURE OF HIV-GP120 CORE IN COMPLEX WITH CD4-BINDING SITE ANTIBODY B13, SPACE GROUP C2221
Descriptor:HIV-1 HxBc2 gp120 core, Fab b13 heavy chain, Fab b13 light chain
Authors:Chen, L., Kwon, Y.D., Zhou, T., Wu, X., O'Dell, S., Cavacini, L., Hessell, A.J., Pancera, M., Tang, M., Xu, L., Yang, Z.Y., Zhang, M.Y., Arthos, J., Burton, D.R., Dimitrov, D.S., Nabel, G.J., Posner, M., Sodroski, J., Wyatt, R., Mascola, J.R., Kwong, P.D.
Deposit date:2009-07-22
Release date:2009-11-17
Modification date:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural basis of immune evasion at the site of CD4 attachment on HIV-1 gp120.
Science, 326, 2009
3J5M
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3j5m
CRYO-EM STRUCTURE OF THE BG505 SOSIP.664 HIV-1 ENV TRIMER WITH 3 PGV04 FABS
Descriptor:BG505 SOSIP gp120, PGV04 heavy chain
Authors:Lyumkis, D., Julien, J.-P., Wilson, I.A., Ward, A.B.
Deposit date:2013-10-26
Release date:2013-11-13
Modification date:2014-01-08
Method:ELECTRON MICROSCOPY (5.8 Å)
Cite:Cryo-EM structure of a fully glycosylated soluble cleaved HIV-1 envelope trimer.
Science, 342, 2013
3MLR
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3mlr
CRYSTAL STRUCTURE OF ANTI-HIV-1 V3 FAB 2557 IN COMPLEX WITH A NY5 V3 PEPTIDE
Descriptor:Human monoclonal anti-HIV-1 gp120 V3 antibody 2557 Fab light chain, Human monoclonal anti-HIV-1 gp120 V3 antibody 2557 Fab heavy chain, HIV-1 gp120 third variable region (V3) crown
Authors:Kong, X.-P.
Deposit date:2010-04-18
Release date:2010-07-14
Modification date:2010-08-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Conserved structural elements in the V3 crown of HIV-1 gp120.
Nat.Struct.Mol.Biol., 17, 2010
3MLT
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3mlt
CRYSTAL STRUCTURE OF ANTI-HIV-1 V3 FAB 2557 IN COMPLEX WITH A UG1033 V3 PEPTIDE
Descriptor:Human monoclonal anti-HIV-1 gp120 V3 antibody 2557 Fab light chain, Human monoclonal anti-HIV-1 gp120 V3 antibody 2557 Fab heavy chain, HIV-1 gp120 third variable region (V3) crown
Authors:Kong, X.-P.
Deposit date:2010-04-18
Release date:2010-07-14
Modification date:2010-08-18
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Conserved structural elements in the V3 crown of HIV-1 gp120.
Nat.Struct.Mol.Biol., 17, 2010
3MLU
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3mlu
CRYSTAL STRUCTURE OF ANTI-HIV-1 V3 FAB 2557 IN COMPLEX WITH A ZAM18 V3 PEPTIDE
Descriptor:Human monoclonal anti-HIV-1 gp120 V3 antibody 2557 Fab light chain, Human monoclonal anti-HIV-1 gp120 V3 antibody 2557 Fab heavy chain, HIV-1 gp120 third variable region (V3) crown
Authors:Kong, X.-P.
Deposit date:2010-04-18
Release date:2010-07-14
Modification date:2010-08-18
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:Conserved structural elements in the V3 crown of HIV-1 gp120.
Nat.Struct.Mol.Biol., 17, 2010
3MLV
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3mlv
CRYSTAL STRUCTURE OF ANTI-HIV-1 V3 FAB 2557 IN COMPLEX WITH AN NOF V3 PEPTIDE
Descriptor:Human monoclonal anti-HIV-1 gp120 V3 antibody 2557 Fab light chain, Human monoclonal anti-HIV-1 gp120 V3 antibody 2557 Fab heavy chain, HIV-1 gp120 third variable region (V3) crown
Authors:Kong, X.-P.
Deposit date:2010-04-18
Release date:2010-07-14
Modification date:2010-08-18
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Conserved structural elements in the V3 crown of HIV-1 gp120.
Nat.Struct.Mol.Biol., 17, 2010
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105097
entries available on 2014-12-17
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