Mine: PDB keyword search results

1E3D
  • Download 1e3d
  • View 1e3d
1e3d
[NIFE] HYDROGENASE FROM DESULFOVIBRIO DESULFURICANS ATCC 27774
Descriptor:[NIFE] HYDROGENASE SMALL SUBUNIT, [NIFE] HYDROGENASE LARGE SUBUNIT
Authors:Matias, P.M., Soares, C.M., Saraiva, L.M., Coelho, R., Morais, J., Le Gall, J., Carrondo, M.A.
Deposit date:2000-06-14
Release date:2001-06-14
Modification date:2009-02-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:[Nife] Hydrogenase from Desulfovibrio Desulfuricans Atcc 27774: Gene Sequencing, Three-Dimensional Structure Determination and Refinement at 1.8 A and Modelling Studies of its Interaction with the Tetrahaem Cytochrome C3.
J.Biol.Inorg.Chem., 6, 2001
3AYX
  • Download 3ayx
  • View 3ayx
3ayx
MEMBRANE-BOUND RESPIRATORY [NIFE] HYDROGENASE FROM HYDROGENOVIBRIO MARINUS IN AN H2-REDUCED CONDITION
Descriptor:Membrane-bound hydrogenase large subunit (E.C.1.12.5.1), Membrane-bound hydrogenase small subunit (E.C.1.12.5.1)
Authors:Shomura, Y., Yoon, K.S., Nishihara, H., Higuchi, Y.
Deposit date:2011-05-20
Release date:2011-10-12
Modification date:2011-11-23
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Structural basis for a [4Fe-3S] cluster in the oxygen-tolerant membrane-bound [NiFe]-hydrogenase
Nature, 479, 2011
3AYY
  • Download 3ayy
  • View 3ayy
3ayy
MEMBRANE-BOUND RESPIRATORY [NIFE] HYDROGENASE FROM HYDROGENOVIBRIO MARINUS IN A FERRICYANIDE-OXIDIZED CONDITION
Descriptor:Membrane-bound hydrogenase large subunit (E.C.1.12.5.1), Membrane-bound hydrogenase small subunit (E.C.1.12.5.1)
Authors:Shomura, Y., Yoon, K.S., Nishihara, H., Higuchi, Y.
Deposit date:2011-05-20
Release date:2011-10-12
Modification date:2011-11-23
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:Structural basis for a [4Fe-3S] cluster in the oxygen-tolerant membrane-bound [NiFe]-hydrogenase
Nature, 479, 2011
3AYZ
  • Download 3ayz
  • View 3ayz
3ayz
MEMBRANE-BOUND RESPIRATORY [NIFE] HYDROGENASE FROM HYDROGENOVIBRIO MARINUS IN AN AIR-OXIDIZED CONDITION
Descriptor:Membrane-bound hydrogenase large subunit (E.C.1.12.5.1), Membrane-bound hydrogenase small subunit (E.C.1.12.5.1)
Authors:Shomura, Y., Yoon, K.S., Nishihara, H., Higuchi, Y.
Deposit date:2011-05-20
Release date:2011-10-12
Modification date:2011-11-23
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Structural basis for a [4Fe-3S] cluster in the oxygen-tolerant membrane-bound [NiFe]-hydrogenase
Nature, 479, 2011
3RGW
  • Download 3rgw
  • View 3rgw
3rgw
CRYSTAL STRUCTURE AT 1.5 A RESOLUTION OF AN H2-REDUCED, O2-TOLERANT HYDROGENASE FROM RALSTONIA EUTROPHA UNMASKS A NOVEL IRON-SULFUR CLUSTER
Descriptor:Uptake hydrogenase large subunit (E.C.1.12.99.6), Uptake hydrogenase small subunit (E.C.1.12.99.6)
Authors:Scheerer, P., Fritsch, J., Frielingsdorf, S., Kroschinsky, S., Friedrich, B., Lenz, O., Spahn, C.M.T.
Deposit date:2011-04-10
Release date:2011-10-26
Modification date:2011-11-23
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The crystal structure of an oxygen-tolerant hydrogenase uncovers a novel iron-sulphur centre.
Nature, 479, 2011
3ZFS
  • Download 3zfs
  • View 3zfs
3zfs
CRYO-EM STRUCTURE OF THE F420-REDUCING NIFE-HYDROGENASE FROM A METHANOGENIC ARCHAEON WITH BOUND SUBSTRATE
Descriptor:F420-REDUCING HYDROGENASE, SUBUNIT ALPHA (E.C.1.12.98.1), F420-REDUCING HYDROGENASE, SUBUNIT GAMMA (E.C.1.12.98.1), F420-REDUCING HYDROGENASE, SUBUNIT BETA (E.C.1.12.98.1)
Authors:Mills, D.J., Vitt, S., Strauss, M., Shima, S., Vonck, J.
Deposit date:2012-12-12
Release date:2013-03-06
Modification date:2013-04-03
Method:ELECTRON MICROSCOPY (4 Å)
Cite:De Novo Modeling of the F420-Reducing [Nife]-Hydrogenase from a Methanogenic Archaeon by Cryo-Electron Microscopy
Elife, 2, 2013
4C3O
  • Download 4c3o
  • View 4c3o
4c3o
STRUCTURE AND FUNCTION OF AN OXYGEN TOLERANT NIFE HYDROGENASE FROM SALMONELLA
Descriptor:HYDROGENASE-1 LARGE SUBUNIT (E.C.1.12.7.2), HYDROGENASE-1 SMALL SUBUNIT (E.C.1.12.7.2)
Authors:Bowman, L., Flanagan, L., Fyfe, P.K., Parkin, A., Hunter, W.N., Sargent, F.
Deposit date:2013-08-26
Release date:2014-01-29
Modification date:2014-03-12
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:How the Structure of the Large Subunit Controls Function in an Oxygen-Tolerant [Nife]-Hydrogenase.
Biochem.J., 458, 2014
4CI0
  • Download 4ci0
  • View 4ci0
4ci0
ELECTRON CRYO-MICROSCOPY OF F420-REDUCING NIFE HYDROGENASE FRH
Descriptor:F420-REDUCING HYDROGENASE, SUBUNIT ALPHA (E.C.1.12.98.1), F420-REDUCING HYDROGENASE, SUBUNIT GAMMA (E.C.1.12.98.1), F420-REDUCING HYDROGENASE, SUBUNIT BETA (E.C.1.12.98.1)
Authors:Allegretti, M., Mills, D.J., McMullan, G., Kuehlbrandt, W., Vonck, J.
Deposit date:2013-12-05
Release date:2014-02-26
Modification date:2014-03-05
Method:ELECTRON MICROSCOPY (3.36 Å)
Cite:Atomic Model of the F420-Reducing [Nife] Hydrogenase by Electron Cryo-Electron Microscopy Using a Direct Electron Detector.
Elife, 3, 2014
4IUB
  • Download 4iub
  • View 4iub
4iub
CRYSTAL STRUCTURE OF AN O2-TOLERANT [NIFE]-HYDROGENASE FROM RALSTONIA EUTROPHA IN ITS AS-ISOLATED FORM - OXIDIZED STATE 1
Descriptor:Uptake hydrogenase large subunit (E.C.1.12.99.6), Uptake hydrogenase small subunit (E.C.1.12.99.6)
Authors:Frielingsdorf, S., Schmidt, A., Fritsch, J., Lenz, O., Scheerer, P.
Deposit date:2013-01-20
Release date:2014-04-02
Modification date:2014-05-14
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Reversible [4Fe-3S] cluster morphing in an O2-tolerant [NiFe] hydrogenase.
Nat.Chem.Biol., 10, 2014
4IUC
  • Download 4iuc
  • View 4iuc
4iuc
CRYSTAL STRUCTURE OF AN O2-TOLERANT [NIFE]-HYDROGENASE FROM RALSTONIA EUTROPHA IN ITS AS-ISOLATED FORM - OXIDIZED STATE 2
Descriptor:Uptake hydrogenase large subunit (E.C.1.12.99.6), Uptake hydrogenase small subunit (E.C.1.12.99.6)
Authors:Frielingsdorf, S., Schmidt, A., Fritsch, J., Lenz, O., Scheerer, P.
Deposit date:2013-01-20
Release date:2014-04-02
Modification date:2014-05-14
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Reversible [4Fe-3S] cluster morphing in an O2-tolerant [NiFe] hydrogenase.
Nat.Chem.Biol., 10, 2014
4IUD
  • Download 4iud
  • View 4iud
4iud
CRYSTAL STRUCTURE OF AN O2-TOLERANT [NIFE]-HYDROGENASE FROM RALSTONIA EUTROPHA IN ITS AS-ISOLATED FORM WITH ASCORBATE - PARTLY REDUCED STATE
Descriptor:Uptake hydrogenase large subunit (E.C.1.12.99.6), Uptake hydrogenase small subunit (E.C.1.12.99.6)
Authors:Hammer, M., Schmidt, A., Frielingsdorf, S., Fritsch, J., Lenz, O., Scheerer, P.
Deposit date:2013-01-20
Release date:2014-04-02
Modification date:2014-05-14
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Reversible [4Fe-3S] cluster morphing in an O2-tolerant [NiFe] hydrogenase.
Nat.Chem.Biol., 10, 2014
1CC1
  • Download 1cc1
  • View 1cc1
1cc1
CRYSTAL STRUCTURE OF A REDUCED, ACTIVE FORM OF THE NI-FE-SE HYDROGENASE FROM DESULFOMICROBIUM BACULATUM
Descriptor:HYDROGENASE (E.C.1.18.99.1)
Authors:Garcin, E., Vernede, X., Hatchikian, E.C., Volbeda, A., Frey, M., Fontecilla-Camps, J.C.
Deposit date:1999-03-03
Release date:1999-06-01
Modification date:2014-08-06
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:The crystal structure of a reduced [NiFeSe] hydrogenase provides an image of the activated catalytic center
Structure Fold.Des., 7, 1999
1FRF
  • Download 1frf
  • View 1frf
1frf
CRYSTAL STRUCTURE OF THE NI-FE HYDROGENASE FROM DESULFOVIBRIO FRUCTOSOVORANS
Descriptor:[NI-FE] HYDROGENASE (E.C.1.18.99.1)
Authors:Montet, Y., Volbeda, A., Piras, C., Hatchikian, E.C., Frey, M., Fontecilla, J.C.
Deposit date:1998-07-21
Release date:1998-07-29
Modification date:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:3Fe-4S] to [4Fe-4S] cluster conversion in Desulfovibrio fructosovorans [NiFe] hydrogenase by site-directed mutagenesis
Proc.Natl.Acad.Sci.USA, 95, 1998
1FRV
  • Download 1frv
  • View 1frv
1frv
CRYSTAL STRUCTURE OF THE OXIDIZED FORM OF NI-FE HYDROGENASE
Descriptor:HYDROGENASE, IRON/SULFUR CLUSTER, FE3-S4 CLUSTER, HYDRATED FE
Authors:Volbeda, A., Frey, M., Fontecilla-Camps, J.C.
Deposit date:1996-03-28
Release date:1996-11-08
Modification date:2009-03-24
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Crystal structure of the nickel-iron hydrogenase from Desulfovibrio gigas.
Nature, 373, 1995
1H2A
  • Download 1h2a
  • View 1h2a
1h2a
SINGLE CRYSTALS OF HYDROGENASE FROM DESULFOVIBRIO VULGARIS
Descriptor:HYDROGENASE, IRON/SULFUR CLUSTER, FE3-S4 CLUSTER, NI-FE ACTIVE CENTER
Authors:Higuchi, Y., Yasuoka, N.
Deposit date:1997-10-17
Release date:1999-02-09
Modification date:2009-03-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Unusual ligand structure in Ni-Fe active center and an additional Mg site in hydrogenase revealed by high resolution X-ray structure analysis.
Structure, 5, 1997
1H2R
  • Download 1h2r
  • View 1h2r
1h2r
THREE-DIMENSIONAL STRUCTURE OF NI-FE HYDROGENASE FROM DESULFIVIBRIO VULGARIS MIYAZAKI F IN THE REDUCED FORM AT 1.4 A RESOLUTION
Descriptor:PROTEIN (PERIPLASMIC [NIFE] HYDROGENASE SMALL SUBUNIT) (1.12.2.1)
Authors:Higuchi, Y., Ogata, H.
Deposit date:1999-06-14
Release date:2000-01-05
Modification date:2009-03-24
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Removal of the bridging ligand atom at the Ni-Fe active site of [NiFe] hydrogenase upon reduction with H2, as revealed by X-ray structure analysis at 1.4 A resolution.
Structure Fold.Des., 7, 1999
1UBH
  • Download 1ubh
  • View 1ubh
1ubh
THREE-DIMENSIONAL STRUCTURE OF THE CARBON MONOXIDE COMPLEX OF [NIFE]HYDROGENASE FROM DESULUFOVIBRIO VULGARIS MIYAZAKI F
Descriptor:Periplasmic [NiFe] hydrogenase small subunit/Periplasmic [NiFe] hydrogenase large subunit (E.C.1.12.2.1)
Authors:Ogata, H., Mizoguchi, Y., Mizuno, N., Miki, K., Adachi, S., Yasuoka, N., Yagi, T., Yamauchi, O., Hirota, S., Higuchi, Y.
Deposit date:2003-04-04
Release date:2003-04-29
Modification date:2009-02-24
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural Studies of the Carbon Monoxide Complex of [NiFe]hydrogenase from Desulfovibrio vulgaris Miyazaki F: Suggestion for the Initial Activation Site for Dihydrogen
J.Am.Chem.Soc., 124, 2002
1UBJ
  • Download 1ubj
  • View 1ubj
1ubj
THREE-DIMENSIONAL STRUCTURE OF THE CARBON MONOXIDE COMPLEX OF [NIFE]HYDROGENASE FROM DESULUFOVIBRIO VULGARIS MIYAZAKI F
Descriptor:Periplasmic [NiFe] hydrogenase small subunit/Periplasmic [NiFe] hydrogenase large subunit (E.C.1.12.2.1)
Authors:Ogata, H., Mizoguchi, Y., Mizuno, N., Miki, K., Adachi, S., Yasuoka, N., Yagi, T., Yamauchi, O., Hirota, S., Higuchi, Y.
Deposit date:2003-04-04
Release date:2003-04-29
Modification date:2009-02-24
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural Studies of the Carbon Monoxide Complex of [NiFe]hydrogenase from Desulfovibrio vulgaris Miyazaki F: Suggestion for the Initial Activation Site for Dihydrogen
J.Am.Chem.Soc., 124, 2002
1UBK
  • Download 1ubk
  • View 1ubk
1ubk
THREE-DIMENSIONAL STRUCTURE OF THE CARBON MONOXIDE COMPLEX OF [NIFE]HYDROGENASE FROM DESULUFOVIBRIO VULGARIS MIYAZAKI F
Descriptor:Periplasmic [NiFe] hydrogenase small subunit/Periplasmic [NiFe] hydrogenase large subunit (E.C.1.12.2.1)
Authors:Ogata, H., Mizoguchi, Y., Mizuno, N., Miki, K., Adachi, S., Yasuoka, N., Yagi, T., Yamauchi, O., Hirota, S., Higuchi, Y.
Deposit date:2003-04-04
Release date:2003-04-29
Modification date:2009-02-24
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Structural Studies of the Carbon Monoxide Complex of [NiFe]hydrogenase from Desulfovibrio vulgaris Miyazaki F: Suggestion for the Initial Activation Site for Dihydrogen
J.Am.Chem.Soc., 124, 2002
1UBL
  • Download 1ubl
  • View 1ubl
1ubl
THREE-DIMENSIONAL STRUCTURE OF THE CARBON MONOXIDE COMPLEX OF [NIFE]HYDROGENASE FROM DESULUFOVIBRIO VULGARIS MIYAZAKI F
Descriptor:Periplasmic [NiFe] hydrogenase small subunit/Periplasmic [NiFe] hydrogenase large subunit (E.C.1.12.2.1)
Authors:Ogata, H., Mizoguchi, Y., Mizuno, N., Miki, K., Adachi, S., Yasuoka, N., Yagi, T., Yamauchi, O., Hirota, S., Higuchi, Y.
Deposit date:2003-04-04
Release date:2003-04-29
Modification date:2009-02-24
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structural Studies of the Carbon Monoxide Complex of [NiFe]hydrogenase from Desulfovibrio vulgaris Miyazaki F: Suggestion for the Initial Activation Site for Dihydrogen
J.Am.Chem.Soc., 124, 2002
1UBM
  • Download 1ubm
  • View 1ubm
1ubm
THREE-DIMENSIONAL STRUCTURE OF THE CARBON MONOXIDE COMPLEX OF [NIFE]HYDROGENASE FROM DESULUFOVIBRIO VULGARIS MIYAZAKI F
Descriptor:Periplasmic [NiFe] hydrogenase small subunit/Periplasmic [NiFe] hydrogenase large subunit (E.C.1.12.2.1)
Authors:Ogata, H., Mizoguchi, Y., Mizuno, N., Miki, K., Adachi, S., Yasuoka, N., Yagi, T., Yamauchi, O., Hirota, S., Higuchi, Y.
Deposit date:2003-04-04
Release date:2003-04-29
Modification date:2009-02-24
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural Studies of the Carbon Monoxide Complex of [NiFe]hydrogenase from Desulfovibrio vulgaris Miyazaki F: Suggestion for the Initial Activation Site for Dihydrogen
J.Am.Chem.Soc., 124, 2002
1UBO
  • Download 1ubo
  • View 1ubo
1ubo
THREE-DIMENSIONAL STRUCTURE OF THE CARBON MONOXIDE COMPLEX OF [NIFE]HYDROGENASE FROM DESULUFOVIBRIO VULGARIS MIYAZAKI F
Descriptor:Periplasmic [NiFe] hydrogenase small subunit/Periplasmic [NiFe] hydrogenase large subunit (E.C.1.12.2.1)
Authors:Ogata, H., Mizoguchi, Y., Mizuno, N., Miki, K., Adachi, S., Yasuoka, N., Yagi, T., Yamauchi, O., Hirota, S., Higuchi, Y.
Deposit date:2003-04-04
Release date:2003-04-29
Modification date:2009-02-24
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural Studies of the Carbon Monoxide Complex of [NiFe]hydrogenase from Desulfovibrio vulgaris Miyazaki F: Suggestion for the Initial Activation Site for Dihydrogen
J.Am.Chem.Soc., 124, 2002
1UBR
  • Download 1ubr
  • View 1ubr
1ubr
THREE-DIMENSIONAL STRUCTURE OF THE CARBON MONOXIDE COMPLEX OF [NIFE]HYDROGENASE FROM DESULUFOVIBRIO VULGARIS MIYAZAKI F
Descriptor:Periplasmic [NiFe] hydrogenase small subunit/Periplasmic [NiFe] hydrogenase large subunit (E.C.1.12.2.1)
Authors:Ogata, H., Mizoguchi, Y., Mizuno, N., Miki, K., Adachi, S., Yasuoka, N., Yagi, T., Yamauchi, O., Hirota, S., Higuchi, Y.
Deposit date:2003-04-04
Release date:2003-04-29
Modification date:2009-02-24
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Structural Studies of the Carbon Monoxide Complex of [NiFe]hydrogenase from Desulfovibrio vulgaris Miyazaki F: Suggestion for the Initial Activation Site for Dihydrogen
J.Am.Chem.Soc., 124, 2002
1UBT
  • Download 1ubt
  • View 1ubt
1ubt
THREE-DIMENSIONAL STRUCTURE OF THE CARBON MONOXIDE COMPLEX OF [NIFE]HYDROGENASE FROM DESULUFOVIBRIO VULGARIS MIYAZAKI F
Descriptor:Periplasmic [NiFe] hydrogenase small subunit/Periplasmic [NiFe] hydrogenase large subunit (E.C.1.12.2.1)
Authors:Ogata, H., Mizoguchi, Y., Mizuno, N., Miki, K., Adachi, S., Yasuoka, N., Yagi, T., Yamauchi, O., Hirota, S., Higuchi, Y.
Deposit date:2003-04-04
Release date:2003-04-29
Modification date:2009-02-24
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Structural Studies of the Carbon Monoxide Complex of [NiFe]hydrogenase from Desulfovibrio vulgaris Miyazaki F: Suggestion for the Initial Activation Site for Dihydrogen
J.Am.Chem.Soc., 124, 2002
1UBU
  • Download 1ubu
  • View 1ubu
1ubu
THREE-DIMENSIONAL STRUCTURE OF THE CARBON MONOXIDE COMPLEX OF [NIFE]HYDROGENASE FROM DESULUFOVIBRIO VULGARIS MIYAZAKI F
Descriptor:Periplasmic [NiFe] hydrogenase small subunit/Periplasmic [NiFe] hydrogenase large subunit (E.C.1.12.2.1)
Authors:Ogata, H., Mizoguchi, Y., Mizuno, N., Miki, K., Adachi, S., Yasuoka, N., Yagi, T., Yamauchi, O., Hirota, S., Higuchi, Y.
Deposit date:2003-04-04
Release date:2003-04-29
Modification date:2014-04-16
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural Studies of the Carbon Monoxide Complex of [NiFe]hydrogenase from Desulfovibrio vulgaris Miyazaki F: Suggestion for the Initial Activation Site for Dihydrogen
J.Am.Chem.Soc., 124, 2002
<123>
Copyright © 2013-2014 Protein Data Bank Japan
This is the static version of the PDBj web interface with limited functionality. Try the full version instead.
  • Everything
  • PDBID/Keywords
  • Author
  • Chemie
  • Sequence
  • ?
104371
entries available on 2014-10-22
00:00 UTC / 09:00 JST