PDB: 1416 resultsInfo pagesStatus searchChemie searchBIRD

---

4IG7	Crystal structure of Trichinella spiralis UCH37 bound to Ubiquitin vinyl methyl ester Descriptor: METHYL 4-AMINOBUTANOATE, Ubiquitin, Ubiquitin C-terminal hydrolase 37 Authors: Das, C, Kim, M.I, Morrow, M.E. Deposit date: 2012-12-16 Release date: 2013-05-29 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.996 Å) Cite: Stabilization of an Unusual Salt Bridge in Ubiquitin by the Extra C‑Terminal Domain of the Proteasome-Associated Deubiquitinase UCH37 as a Mechanism of Its Exo Specificity. Biochemistry, 52, 2013
4K7U	Crystal structure of Zn2.3-hUb (human ubiquitin) adduct from a solution 70 mM zinc acetate/1.3 mM hUb Descriptor: 1,2-ETHANEDIOL, ACETATE ION, DI(HYDROXYETHYL)ETHER, ... Authors: Fermani, S, Falini, G, Calvaresi, M, Bottoni, A, Arnesano, F, Natile, G. Deposit date: 2013-04-17 Release date: 2013-05-08 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.76 Å) Cite: Conformational selection of ubiquitin quaternary structures driven by zinc ions. Chemistry, 19, 2013
4K7W	Crystal structure of Zn3-hUb(human ubiquitin) adduct from a solution 100 mM zinc acetate/1.3 mM hUb Descriptor: 1,2-ETHANEDIOL, ACETATE ION, ZINC ION, ... Authors: Fermani, S, Falini, G, Calvaresi, M, Bottoni, A, Arnesano, F, Natile, G. Deposit date: 2013-04-17 Release date: 2013-05-08 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.76 Å) Cite: Conformational selection of ubiquitin quaternary structures driven by zinc ions. Chemistry, 19, 2013
4K7S	Crystal structure of Zn2-hUb (human ubiquitin) adduct from a solution 35 mM zinc acetate/1.3 mM hUb Descriptor: 1,2-ETHANEDIOL, ACETATE ION, ZINC ION, ... Authors: Fermani, S, Falini, G, Calvaresi, M, Bottoni, A, Arnesano, F, Natile, G. Deposit date: 2013-04-17 Release date: 2013-05-08 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.76 Å) Cite: Conformational selection of ubiquitin quaternary structures driven by zinc ions. Chemistry, 19, 2013
3H7P	Crystal structure of K63-linked di-ubiquitin Descriptor: CADMIUM ION, Ubiquitin Authors: Weeks, S.D, Grasty, K.C, Hernandez-Cuebas, L, Loll, P.J. Deposit date: 2009-04-28 Release date: 2009-09-22 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal structures of Lys-63-linked tri- and di-ubiquitin reveal a highly extended chain architecture. Proteins, 77, 2009
3H1U	Structure of ubiquitin in complex with Cd ions Descriptor: CADMIUM ION, Ubiquitin Authors: Qureshi, I.A, Ferron, F, Cheung, P, Lescar, J. Deposit date: 2009-04-14 Release date: 2009-05-05 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (3 Å) Cite: Crystallographic structure of ubiquitin in complex with cadmium ions BMC RES NOTES, 2, 2009
3H7S	Crystal structures of K63-linked di- and tri-ubiquitin reveal a highly extended chain architecture Descriptor: Ubiquitin, ZINC ION Authors: Weeks, S.D, Grasty, K.C, Hernandez-Cuebas, L, Loll, P.J. Deposit date: 2009-04-28 Release date: 2009-09-22 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Crystal structures of Lys-63-linked tri- and di-ubiquitin reveal a highly extended chain architecture. Proteins, 77, 2009
3HM3	The Structure and conformation of Lys-63 linked tetra-ubiquitin Descriptor: Ubiquitin, ZINC ION Authors: Datta, A.B, Hura, G.L, Wolberger, C. Deposit date: 2009-05-28 Release date: 2009-08-25 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.96 Å) Cite: The structure and conformation of Lys63-linked tetraubiquitin. J.Mol.Biol., 392, 2009
6V5D	EROS3 RDC and NOE Derived Ubiquitin Ensemble Descriptor: Ubiquitin Authors: Lange, O.F, Lakomek, N.A, Smith, C.A, Griesinger, C, de Groot, B.L. Deposit date: 2019-12-04 Release date: 2020-01-01 Last modified: 2020-02-26 Method: SOLUTION NMR Cite: Enhancing NMR derived ensembles with kinetics on multiple timescales. J.Biomol.Nmr, 74, 2020
6W9R	Crystal structure of an OTU deubiquitinase from Wolbachia pipientis wMel bound to ubiquitin Descriptor: CITRATE ANION, OTU domain-containing protein wMelOTU, Ubiquitin Authors: Schubert, A.F, Pruneda, J.N, Komander, D. Deposit date: 2020-03-23 Release date: 2020-07-01 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.82 Å) Cite: Identification and characterization of diverse OTU deubiquitinases in bacteria. Embo J., 39, 2020
5JBV	Lys27-linked triubiquitin Descriptor: D-ubiquitin, NITRATE ION, Ubiquitin Authors: Pan, M, Gao, S, Zheng, Y. Deposit date: 2016-04-13 Release date: 2016-05-18 Last modified: 2022-02-09 Method: X-RAY DIFFRACTION (2.104 Å) Cite: Structure of Lys27-linked triubiquitin To Be Published
5J8P	Lys27-linked diubiquitin Descriptor: D-ubiquitin, MAGNESIUM ION, ubiquitin Authors: Pan, M, Gao, S, Zheng, Y. Deposit date: 2016-04-08 Release date: 2016-05-18 Last modified: 2022-02-09 Method: X-RAY DIFFRACTION (1.554 Å) Cite: Structure of Lys27-linked diubiquitin To Be Published
5JBY	Lys27-linked triubiquitin Descriptor: D-ubiquitin, ubiquitin Authors: Pan, M, Gao, S, Zheng, Y. Deposit date: 2016-04-14 Release date: 2016-07-20 Last modified: 2022-02-09 Method: X-RAY DIFFRACTION (1.987 Å) Cite: Structure of Lys27-linked triubiquitin To Be Published
6W9S	Crystal structure of an OTU deubiquitinase from Escherichia albertii bound to ubiquitin Descriptor: FORMIC ACID, OTU domain-containing protein EschOTU, Ubiquitin Authors: Schubert, A.F, Pruneda, J.N, Komander, D. Deposit date: 2020-03-23 Release date: 2020-07-01 Last modified: 2020-08-12 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Identification and characterization of diverse OTU deubiquitinases in bacteria. Embo J., 39, 2020
5JZE	Erve virus viral OTU domain protease in complex with mouse ISG15 Descriptor: CITRATE ANION, RNA-dependent RNA polymerase, Ubiquitin-like protein ISG15, ... Authors: Deaton, M.K, Dzimianski, J.V, Pegan, S.D. Deposit date: 2016-05-16 Release date: 2016-10-19 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.47 Å) Cite: Biochemical and Structural Insights into the Preference of Nairoviral DeISGylases for Interferon-Stimulated Gene Product 15 Originating from Certain Species. J.Virol., 90, 2016
5K9P	Ser20 phosphorylated ubiquitin Descriptor: Polyubiquitin-B Authors: Huguenin-Dezot, N, Chin, J.W. Deposit date: 2016-06-01 Release date: 2016-07-20 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Synthesis of Isomeric Phosphoubiquitin Chains Reveals that Phosphorylation Controls Deubiquitinase Activity and Specificity. Cell Rep, 16, 2016
5KHY	Crystal structure of oxime-linked K6 diubiquitin Descriptor: ETHANOLAMINE, Polyubiquitin-B, ZINC ION Authors: Stanley, M, Virdee, S. Deposit date: 2016-06-16 Release date: 2016-09-14 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (3.501 Å) Cite: Genetically Directed Production of Recombinant, Isosteric and Nonhydrolysable Ubiquitin Conjugates. Chembiochem, 17, 2016
3M3J	A new crystal form of Lys48-linked diubiquitin Descriptor: 1,2-ETHANEDIOL, SULFATE ION, Ubiquitin Authors: Trempe, J.F, Brown, N.R, Noble, M.E.M, Endicott, J.A. Deposit date: 2010-03-09 Release date: 2010-03-23 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (1.6 Å) Cite: A new crystal form of Lys48-linked diubiquitin. Acta Crystallogr.,Sect.F, 66, 2010
4XKH	CRYSTAL STRUCTURE OF THE AIRAPL TANDEM UIMS IN COMPLEX WITH A LYS48-LINKED TRI-UBIQUITIN Descriptor: AN1-type zinc finger protein 2B, Polyubiquitin-C Authors: Rahighi, S, Kawasaki, M, Stanhill, A, Wakatsuki, S. Deposit date: 2015-01-11 Release date: 2016-02-17 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (3 Å) Cite: Selective Binding of AIRAPL Tandem UIMs to Lys48-Linked Tri-Ubiquitin Chains. Structure, 24, 2016
4Y1H	Crystal structure of K33 linked tri-Ubiquitin Descriptor: 1,2-ETHANEDIOL, Ubiquitin-40S ribosomal protein S27a Authors: Kristariyanto, Y.A, Abdul Rehman, S.A, Choi, S.Y, Ritorto, S, Campbell, D.G, Morrice, N.A, Toth, R, Kulathu, Y. Deposit date: 2015-02-07 Release date: 2015-03-18 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Assembly and structure of Lys33-linked polyubiquitin reveals distinct conformations. Biochem.J., 467, 2015
1UD7	SOLUTION STRUCTURE OF THE DESIGNED HYDROPHOBIC CORE MUTANT OF UBIQUITIN, 1D7 Descriptor: PROTEIN (UBIQUITIN CORE MUTANT 1D7) Authors: Johnson, E.C, Lazar, G.A, Desjarlais, J.R, Handel, T.M. Deposit date: 1999-04-07 Release date: 1999-05-06 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: Solution structure and dynamics of a designed hydrophobic core variant of ubiquitin. Structure Fold.Des., 7, 1999
8DMS	Crystal structure of Legionella pneumophila macrodomain MavL in complex with ubiquitin vinyl methyl ester soaked with ADP-ribose Descriptor: CITRATE ANION, METHYL 4-AMINOBUTANOATE, MavL, ... Authors: Zhang, Z, Das, C. Deposit date: 2022-07-08 Release date: 2023-07-12 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Structure of Legionella pneumophila macrodomain MavL in complex with ubiquitin vinyl methyl ester soaked with ADP-ribose To Be Published
8DMQ	Crystal structure of Legionella pneumophila macrodomain MavL in complex with ubiquitin vinyl methyl ester Descriptor: 1,2-ETHANEDIOL, CITRATE ANION, METHYL 4-AMINOBUTANOATE, ... Authors: Zhang, Z, Das, C. Deposit date: 2022-07-08 Release date: 2023-07-12 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.195 Å) Cite: Structure of Legionella pneumophila macrodomain effector MavL in complex with ubiquitin vinyl methyl ester To Be Published
1TTN	Solution structure of the ubiquitin-like domain of human DC-UBP from dendritic cells Descriptor: dendritic cell-derived ubiquitin-like protein Authors: Hu, H.Y. Deposit date: 2004-06-23 Release date: 2005-07-05 Last modified: 2022-03-02 Method: SOLUTION NMR Cite: Solution structure of the ubiquitin-like domain of human DC-UbP from dendritic cells Protein Sci., 14, 2005
4XYZ	Crystal structure of K33 linked di-Ubiquitin Descriptor: 1,2-ETHANEDIOL, ACETATE ION, IODIDE ION, ... Authors: Kristariyanto, Y.A, Abdul Rehman, S.A, Choi, S.Y, Ritorto, S, Campbell, D.G, Morrice, N.A, Toth, R, Kulathu, Y. Deposit date: 2015-02-03 Release date: 2015-03-18 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Assembly and structure of Lys33-linked polyubiquitin reveals distinct conformations. Biochem.J., 467, 2015

<12345678910111213141516>