Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7LMW
DownloadVisualize
BU of 7lmw by Molmil
Receptor for Advanced Glycation End Products VC1 domain in complex with 3-(3-((4-(4-carboxyphenoxy)benzyl)oxy)phenyl)-1H-indole-2-carboxylic acid
Descriptor: 7-methyl-3-(1~{H}-pyrazol-4-yl)-1~{H}-indole-2-carboxylic acid, ACETATE ION, Advanced glycosylation end product-specific receptor, ...
Authors:Salay, L.E, Kozlyuk, N, Gilston, B.A, Gogliotti, R.D, Christov, P.P, Kim, K, Ovee, M, Waterson, A.G, Chazin, W.J.
Deposit date:2021-02-06
Release date:2021-07-28
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A fragment-based approach to discovery of Receptor for Advanced Glycation End products inhibitors.
Proteins, 89, 2021
3EJJ
DownloadVisualize
BU of 3ejj by Molmil
Structure of M-CSF bound to the first three domains of FMS
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Colony stimulating factor-1, Macrophage colony-stimulating factor 1 receptor
Authors:Chen, X, Liu, H, Focia, P.J, Shim, A, He, X.
Deposit date:2008-09-18
Release date:2008-12-09
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of macrophage colony stimulating factor bound to FMS: diverse signaling assemblies of class III receptor tyrosine kinases.
Proc.Natl.Acad.Sci.USA, 105, 2008
8I9M
DownloadVisualize
BU of 8i9m by Molmil
The RAGE and HMGB1 complex
Descriptor: Advanced glycosylation end product-specific receptor, High mobility group protein B1
Authors:Han, C.W, Kim, H.J.
Deposit date:2023-02-07
Release date:2024-02-14
Method:ELECTRON MICROSCOPY (5.19 Å)
Cite:The RAGE and HMGB1 complex
To Be Published
7T0R
DownloadVisualize
BU of 7t0r by Molmil
Crystal structure of the anti-CD4 adnectin 6940_B01 as a complex with the extracellular domains of CD4 and ibalizumab fAb
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Adnectin 6940_B01, Ibalizumab Heavy Chain, ...
Authors:Williams, S.P, Concha, N.O, Wensel, D.L, Hong, X.
Deposit date:2021-11-30
Release date:2022-01-12
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.65 Å)
Cite:Novel Bent Conformation of CD4 Induced by HIV-1 Inhibitor Indirectly Prevents Productive Viral Attachment.
J.Mol.Biol., 434, 2021
7WSO
DownloadVisualize
BU of 7wso by Molmil
Structure of a membrane protein G
Descriptor: B-cell antigen receptor complex-associated protein alpha chain, B-cell antigen receptor complex-associated protein beta chain, Immunoglobulin heavy constant gamma 1
Authors:Ma, X, Zhu, Y, Chen, Y, Huang, Z.
Deposit date:2022-01-30
Release date:2022-08-31
Method:ELECTRON MICROSCOPY (3.03 Å)
Cite:Cryo-EM structures of two human B cell receptor isotypes.
Science, 377, 2022
7T0O
DownloadVisualize
BU of 7t0o by Molmil
cryoEM reconstruction of the HIV gp140 in complex with the extracellular domains of CD4 and the adnectin domain of Combinectin. The gp140 and CD4 coordinates from entry 6EDU were rigid body fitted to the EM map along withe the crystal structure of CD4+adnectin
Descriptor: Adnectin, BG505 SOSIP.664 gp140, T-cell surface glycoprotein CD4
Authors:Concha, N.O, William, S.P, Wenzel, D.L.
Deposit date:2021-11-30
Release date:2022-01-12
Method:ELECTRON MICROSCOPY (8.7 Å)
Cite:Novel Bent Conformation of CD4 Induced by HIV-1 Inhibitor Indirectly Prevents Productive Viral Attachment.
J.Mol.Biol., 434, 2021
7WSP
DownloadVisualize
BU of 7wsp by Molmil
Structure of a membrane protein M
Descriptor: B-cell antigen receptor complex-associated protein alpha chain, B-cell antigen receptor complex-associated protein beta chain, Isoform 2 of Immunoglobulin heavy constant mu
Authors:Ma, X, Zhu, Y, Chen, Y, Huang, Z.
Deposit date:2022-01-30
Release date:2023-02-01
Method:ELECTRON MICROSCOPY (4.09 Å)
Cite:Structure of a membrane protein M
To Be Published
8IOW
DownloadVisualize
BU of 8iow by Molmil
Cryo-EM structure of the sarilumab Fab/IL-6R complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of Sarilumab Fab, Interleukin-6 receptor subunit alpha, ...
Authors:She, J, Chen, L, Wang, M.X.
Deposit date:2023-03-13
Release date:2024-03-20
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-EM structure of the sarilumab Fab/IL-6R complex
To Be Published
7XQ8
DownloadVisualize
BU of 7xq8 by Molmil
Structure of human B-cell antigen receptor of the IgM isotype
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, B-cell antigen receptor complex-associated protein alpha chain, B-cell antigen receptor complex-associated protein beta chain, ...
Authors:Chen, M.Y, Su, Q, Shi, Y.G.
Deposit date:2022-05-07
Release date:2022-08-17
Last modified:2022-08-31
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Cryo-EM structure of the human IgM B cell receptor.
Science, 377, 2022
8J6F
DownloadVisualize
BU of 8j6f by Molmil
Cryo-EM structure of the Tocilizumab Fab/IL-6R complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of Tocilizumab Fab, IL6R-D2 peptide, ...
Authors:She, J, Chen, L.
Deposit date:2023-04-25
Release date:2024-03-27
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Cryo-EM structures of tocilizumab and sarilumab Fabs in complex with IL-6R
To Be Published
7XT6
DownloadVisualize
BU of 7xt6 by Molmil
Structure of a membrane protein M3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, B-cell antigen receptor complex-associated protein alpha chain, ...
Authors:Ma, X, Zhu, Y, Chen, Y, Huang, Z.
Deposit date:2022-05-16
Release date:2022-08-31
Method:ELECTRON MICROSCOPY (3.63 Å)
Cite:Cryo-EM structures of two human B cell receptor isotypes.
Science, 377, 2022
4BFI
DownloadVisualize
BU of 4bfi by Molmil
Structure of the complex of the extracellular portions of mouse CD200R and mouse CD200
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, CELL SURFACE GLYCOPROTEIN CD200 RECEPTOR 1, ...
Authors:Hatherley, D, Lea, S.M, Johnson, S, Barclay, A.N.
Deposit date:2013-03-19
Release date:2013-05-01
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.22 Å)
Cite:Structures of Cd200/Cd200 Receptor Family and Implications for Topology, Regulation, and Evolution
Structure, 21, 2013
7TTZ
DownloadVisualize
BU of 7ttz by Molmil
Heterodimeric IgA Fc in complex with Staphylococcus aureus protein SSL7
Descriptor: 1,2-ETHANEDIOL, 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Boulanger, M.J, Verstraete, M, Heinkel, F, Escobar, E, Dixit, S, Von Kreudenstein, T.S.
Deposit date:2022-02-02
Release date:2023-02-01
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Engineering a pure and stable heterodimeric IgA for the development of multispecific therapeutics.
Mabs, 14, 2022
7TXD
DownloadVisualize
BU of 7txd by Molmil
Cryo-EM structure of BG505 SOSIP HIV-1 Env trimer in complex with CD4 receptor (D1D2) and broadly neutralizing darpin bnD.9
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Broadly neutralizing darpin bnd.9, ...
Authors:Cerutti, G, Gorman, J, Kwong, P.D, Shapiro, L.
Deposit date:2022-02-08
Release date:2023-04-12
Last modified:2023-09-27
Method:ELECTRON MICROSCOPY (3.87 Å)
Cite:Trapping the HIV-1 V3 loop in a helical conformation enables broad neutralization.
Nat.Struct.Mol.Biol., 30, 2023
7UVL
DownloadVisualize
BU of 7uvl by Molmil
IgA1 Protease with IgA1 substrate
Descriptor: Immunoglobulin alpha-1 heavy chain, Immunoglobulin alpha-1 heavy constant, Immunoglobulin alpha-1 light chain, ...
Authors:Eisenmesser, Z.E, Zheng, H.
Deposit date:2022-05-02
Release date:2022-11-23
Method:ELECTRON MICROSCOPY (3.56 Å)
Cite:A substrate-induced gating mechanism is conserved among Gram-positive IgA1 metalloproteases.
Commun Biol, 5, 2022
4DKD
DownloadVisualize
BU of 4dkd by Molmil
Crystal Structure of Human Interleukin-34 Bound to Human CSF-1R
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Interleukin-34, ...
Authors:Ma, X, Bazan, J.F, Starovasnik, M.A.
Deposit date:2012-02-03
Release date:2012-04-11
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural Basis for the Dual Recognition of Helical Cytokines IL-34 and CSF-1 by CSF-1R.
Structure, 20, 2012
7ZV9
DownloadVisualize
BU of 7zv9 by Molmil
Crystal structure of FLT3 in complex with a monomeric FLT3 Ligand variant
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fms-related tyrosine kinase 3 ligand, ...
Authors:Pannecoucke, E, Savvides, S.N.
Deposit date:2022-05-14
Release date:2023-05-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (4.507 Å)
Cite:Crystal structure of FLT3 in complex with a monomeric FLT3 Ligand variant
To Be Published
4EXP
DownloadVisualize
BU of 4exp by Molmil
Structure of mouse Interleukin-34 in complex with mouse FMS
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Interleukin-34, Macrophage colony-stimulating factor 1 receptor
Authors:Liu, H, Leo, C, Chen, X, Wong, B.R, Williams, L.T, Lin, H, He, X.
Deposit date:2012-04-30
Release date:2012-05-30
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The mechanism of shared but distinct CSF-1R signaling by the non-homologous cytokines IL-34 and CSF-1.
Biochim.Biophys.Acta, 1824, 2012
8FYJ
DownloadVisualize
BU of 8fyj by Molmil
Structure of HIV-1 BG505 SOSIP-HT2 in complex with two CD4 molecules (class I)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp160, ...
Authors:Fan, C, Dam, K.A, Bjorkman, P.J.
Deposit date:2023-01-26
Release date:2023-10-18
Last modified:2023-12-13
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Intermediate conformations of CD4-bound HIV-1 Env heterotrimers.
Nature, 623, 2023
8FYI
DownloadVisualize
BU of 8fyi by Molmil
Structure of HIV-1 BG505 SOSIP-HT1 in complex with one CD4 molecule
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(6-8)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Fan, C, Dam, K.A, Bjorkman, P.J.
Deposit date:2023-01-26
Release date:2023-10-18
Last modified:2023-12-13
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Intermediate conformations of CD4-bound HIV-1 Env heterotrimers.
Nature, 623, 2023
8GRX
DownloadVisualize
BU of 8grx by Molmil
APOE4 receptor in complex with APOE4 NTD
Descriptor: Apolipoprotein E, Leukocyte immunoglobulin-like receptor subfamily A member 6
Authors:Zhou, J, Wang, Y, Huang, G, Shi, Y.
Deposit date:2022-09-02
Release date:2023-07-05
Method:ELECTRON MICROSCOPY (3 Å)
Cite:LilrB3 is a putative cell surface receptor of APOE4.
Cell Res., 33, 2023
6L1Y
DownloadVisualize
BU of 6l1y by Molmil
structure of gp120/CD4 with a non-canonical surface
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, T-cell surface glycoprotein CD4, ...
Authors:Liu, X, Ning, W.
Deposit date:2019-10-01
Release date:2020-05-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.469 Å)
Cite:A non-canonical binding interface in the crystal structure of HIV-1 gp120 core in complex with CD4.
Sci Rep, 7, 2017
3JCB
DownloadVisualize
BU of 3jcb by Molmil
Structure of Simian Immunodeficiency Virus Envelope Spikes bound with CD4 and Monoclonal Antibody 36D5
Descriptor: Antibody 36D5 heavy chain, Antibody 36D5 light chain, Envelope glycoprotein gp120, ...
Authors:Hu, G, Liu, J, Roux, K, Taylor, K.A.
Deposit date:2015-11-25
Release date:2017-05-10
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY
Cite:Structure of Simian Immunodeficiency Virus Envelope Spikes Bound with CD4 and Monoclonal Antibody 36D5.
J. Virol., 91, 2017
3J70
DownloadVisualize
BU of 3j70 by Molmil
Model of gp120, including variable regions, in complex with CD4 and 17b
Descriptor: Envelope glycoprotein gp120, T-cell surface glycoprotein CD4, envelope glycoprotein gp41, ...
Authors:Rasheed, M, Bettadapura, R, Bajaj, C.
Deposit date:2014-04-22
Release date:2015-08-26
Method:ELECTRON MICROSCOPY (20 Å)
Cite:Computational Refinement and Validation Protocol for Proteins with Large Variable Regions Applied to Model HIV Env Spike in CD4 and 17b Bound State.
Structure, 23, 2015
3JCC
DownloadVisualize
BU of 3jcc by Molmil
Structure of Simian Immunodeficiency Virus Envelope Spikes bound with CD4 and Monoclonal Antibody 36D5
Descriptor: Antibody 36D5 heavy chain, Antibody 36D5 light chain, Envelope glycoprotein gp120, ...
Authors:Hu, G, Liu, J, Roux, K, Taylor, K.A.
Deposit date:2015-11-25
Release date:2017-05-10
Last modified:2017-08-30
Method:ELECTRON MICROSCOPY
Cite:Structure of Simian Immunodeficiency Virus Envelope Spikes Bound with CD4 and Monoclonal Antibody 36D5.
J. Virol., 91, 2017

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon