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2VNQ
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Monoclinic form of IDI-1
Descriptor: IMIDAZOLE, ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE, MANGANESE (II) ION, ...
Authors:de Ruyck, J, Oudjama, Y, Wouters, J.
Deposit date:2008-02-06
Release date:2008-03-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Monoclinic Form of Isopentenyl Diphosphate Isomerase: A Case of Polymorphism in Biomolecular Crystals.
Acta Crystallogr.,Sect.F, 64, 2008
2VNP
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Monoclinic form of IDI-1
Descriptor: 2-DIMETHYLAMINO-ETHYL-DIPHOSPHATE, ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE, MAGNESIUM ION, ...
Authors:de Ruyck, J, Oudjama, Y, Wouters, J.
Deposit date:2008-02-06
Release date:2008-03-18
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Monoclinic Form of Isopentenyl Diphosphate Isomerase: A Case of Polymorphism in Biomolecular Crystals.
Acta Crystallogr.,Sect.F, 64, 2008
2XSQ
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BU of 2xsq by Molmil
Crystal structure of human Nudix motif 16 (NUDT16) in complex with IMP and magnesium
Descriptor: CHLORIDE ION, INOSINIC ACID, MAGNESIUM ION, ...
Authors:Tresaugues, L, Welin, M, Arrowsmith, C.H, Berglund, H, Bountra, C, Collins, R, Edwards, A.M, Flodin, S, Flores, A, Graslund, S, Hammarstrom, M, Johansson, I, Karlberg, T, Kol, S, Kotenyova, T, Kouznetsova, E, Moche, M, Nyman, T, Persson, C, Schuler, H, Schutz, P, Siponen, M.I, Thorsell, A.G, van den Berg, S, Wahlberg, E, Weigelt, J, Nordlund, P.
Deposit date:2010-09-29
Release date:2010-11-17
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Structural Basis for the Specificity of Human Nudt16 and its Regulation by Inosine Monophosphate.
Plos One, 10, 2015
4HVY
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BU of 4hvy by Molmil
A thermostable variant of human NUDT18 NUDIX domain obtained by Hot Colony Filtration
Descriptor: GLYCEROL, MAGNESIUM ION, Nucleoside diphosphate-linked moiety X motif 18, ...
Authors:Asial, I, Cheng, Y.X, Engman, H, Wu, B, Dollhopf, M, Nordlund, P, Cornvik, T.
Deposit date:2012-11-07
Release date:2014-01-01
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Engineering protein thermostability using a generic activity-independent biophysical screen inside the cell.
Nat Commun, 4, 2013
2YVO
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BU of 2yvo by Molmil
Crystal structure of NDX2 in complex with MG2+ and AMP from thermus thermophilus HB8
Descriptor: ADENOSINE MONOPHOSPHATE, MAGNESIUM ION, MutT/nudix family protein
Authors:Wakamatsu, T, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-13
Release date:2008-02-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Structural basis for different substrate specificities of two ADP-ribose pyrophosphatases from Thermus thermophilus HB8
J.Bacteriol., 190, 2008
2YYH
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BU of 2yyh by Molmil
Crystal structure of Nudix family protein from Aquifex aeolicus
Descriptor: 8-OXO-dGTPase domain
Authors:Nakagawa, N, Kishishita, S, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-30
Release date:2007-11-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of Nudix family protein from Aquifex aeolicus
To be Published
2YVP
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BU of 2yvp by Molmil
Crystal structure of NDX2 in complex with MG2+ and ampcpr from thermus thermophilus HB8
Descriptor: MAGNESIUM ION, METHYLENE ADP-BETA-XYLOSE, MutT/nudix family protein
Authors:Wakamatsu, T, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-13
Release date:2008-02-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Structural basis for different substrate specificities of two ADP-ribose pyrophosphatases from Thermus thermophilus HB8
J.Bacteriol., 190, 2008
2YVN
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Crystal structure of NDX2 from thermus thermophilus HB8
Descriptor: MutT/nudix family protein
Authors:Wakamatsu, T, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-13
Release date:2008-02-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Structural basis for different substrate specificities of two ADP-ribose pyrophosphatases from Thermus thermophilus HB8
J.Bacteriol., 190, 2008
2YVM
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Crystal structure of NDX2 in complex with MG2+ from thermus thermophilus HB8
Descriptor: MAGNESIUM ION, MutT/nudix family protein
Authors:Wakamatsu, T, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-13
Release date:2008-02-26
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis for different substrate specificities of two ADP-ribose pyrophosphatases from Thermus thermophilus HB8
J.Bacteriol., 190, 2008
4ICK
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BU of 4ick by Molmil
Crystal structure of human AP4A hydrolase E58A mutant
Descriptor: Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical], GLYCEROL, MAGNESIUM ION, ...
Authors:Ge, H, Chen, X.
Deposit date:2012-12-10
Release date:2013-12-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of wild-type and mutant human Ap4A hydrolase.
Biochem.Biophys.Res.Commun., 432, 2013
4IJX
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Crystal structure of human Ap4A hydrolase E58A mutant complexed with DPO
Descriptor: Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical], DIPHOSPHATE, GLYCEROL, ...
Authors:Ge, H, Chen, X.
Deposit date:2012-12-24
Release date:2013-03-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of wild-type and mutant human Ap4A hydrolase.
Biochem.Biophys.Res.Commun., 432, 2013
4ILQ
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BU of 4ilq by Molmil
2.60A resolution structure of CT771 from Chlamydia trachomatis
Descriptor: CT771, GLYCEROL, SULFATE ION
Authors:Barta, M.L, Lovell, S, Battaile, K.P, Hefty, P.S.
Deposit date:2012-12-31
Release date:2014-01-01
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Chlamydia trachomatis CT771 (nudH) Is an Asymmetric Ap4A Hydrolase.
Biochemistry, 53, 2014
3A6V
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BU of 3a6v by Molmil
Crystal structure of the MutT protein in MN(II) bound holo form
Descriptor: L(+)-TARTARIC ACID, MANGANESE (II) ION, Mutator mutT protein, ...
Authors:Nakamura, T, Yamagata, Y.
Deposit date:2009-09-09
Release date:2009-10-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and dynamic features of the MutT protein in the recognition of nucleotides with the mutagenic 8-oxoguanine base
J.Biol.Chem., 285, 2010
4JZT
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BU of 4jzt by Molmil
Crystal structure of the Bacillus subtilis pyrophosphohydrolase BsRppH (E68A mutant) bound to GTP
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, dGTP pyrophosphohydrolase
Authors:Piton, J, Larue, V, Thillier, Y, Dorleans, A, Pellegrini, O, Li de la Sierra-Gallay, I, Vasseur, J.J, Debart, F, Tisne, C, Condon, C.
Deposit date:2013-04-03
Release date:2013-05-01
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Bacillus subtilis RNA deprotection enzyme RppH recognizes guanosine in the second position of its substrates.
Proc.Natl.Acad.Sci.USA, 110, 2013
4JZV
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BU of 4jzv by Molmil
Crystal structure of the Bacillus subtilis pyrophosphohydrolase BsRppH bound to a non-hydrolysable triphosphorylated dinucleotide RNA (pcp-pGpG) - second guanosine residue in guanosine binding pocket
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, MAGNESIUM ION, RNA (5'-R(*(GCP)P*G)-3'), ...
Authors:Piton, J, Larue, V, Thillier, Y, Dorleans, A, Pellegrini, O, Li de la Sierra-Gallay, I, Vasseur, J.J, Debart, F, Tisne, C, Condon, C.
Deposit date:2013-04-03
Release date:2013-05-08
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Bacillus subtilis RNA deprotection enzyme RppH recognizes guanosine in the second position of its substrates.
Proc.Natl.Acad.Sci.USA, 110, 2013
4JZS
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BU of 4jzs by Molmil
Crystal structure of the Bacillus subtilis pyrophosphohydrolase BsRppH (E68A mutant)
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, dGTP pyrophosphohydrolase
Authors:Piton, J, Larue, V, Thillier, Y, Dorleans, A, Pellegrini, O, Li de la Sierra-Gallay, I, Vasseur, J.J, Debart, F, Tisne, C, Condon, C.
Deposit date:2013-04-03
Release date:2013-05-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Bacillus subtilis RNA deprotection enzyme RppH recognizes guanosine in the second position of its substrates.
Proc.Natl.Acad.Sci.USA, 110, 2013
4JZU
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BU of 4jzu by Molmil
Crystal structure of the Bacillus subtilis pyrophosphohydrolase BsRppH bound to a non-hydrolysable triphosphorylated dinucleotide RNA (pcp-pGpG) - first guanosine residue in guanosine binding pocket
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, RNA (5'-R(*(GCP)P*G)-3'), RNA PYROPHOSPHOHYDROLASE
Authors:Piton, J, Larue, V, Thillier, Y, Dorleans, A, Pellegrini, O, Li de la Sierra-Gallay, I, Vasseur, J.J, Debart, F, Tisne, C, Condon, C.
Deposit date:2013-04-03
Release date:2013-05-08
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Bacillus subtilis RNA deprotection enzyme RppH recognizes guanosine in the second position of its substrates.
Proc.Natl.Acad.Sci.USA, 110, 2013
4KG4
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BU of 4kg4 by Molmil
Crystal structure of Saccharomyces cerevisiae Dcp2 Nudix domain (E198Q mutation)
Descriptor: mRNA-decapping enzyme subunit 2
Authors:Aglietti, R.A, Floor, S.N, Gross, J.D.
Deposit date:2013-04-28
Release date:2013-08-21
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Active site conformational dynamics are coupled to catalysis in the mRNA decapping enzyme dcp2.
Structure, 21, 2013
2O1C
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BU of 2o1c by Molmil
Structure of the E. coli dihydroneopterin triphosphate pyrophosphohydrolase
Descriptor: PYROPHOSPHATE, SULFATE ION, dATP pyrophosphohydrolase
Authors:Gabelli, S.B, Bianchet, M.A, Amzel, L.M.
Deposit date:2006-11-28
Release date:2007-08-28
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure and function of the E. coli dihydroneopterin triphosphate pyrophosphatase: a Nudix enzyme involved in folate biosynthesis.
Structure, 15, 2007
2O5F
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BU of 2o5f by Molmil
Crystal Structure of DR0079 from Deinococcus radiodurans at 1.9 Angstrom Resolution
Descriptor: Putative Nudix hydrolase DR_0079
Authors:Kennedy, M.A, Buchko, G.W, Ni, S, Robinson, H.
Deposit date:2006-12-05
Release date:2007-12-18
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Functional and Structural Characterization of DR_0079 from Deinococcus radiodurans, a Novel Nudix Hydrolase with a Preference for Cytosine (Deoxy)ribonucleoside 5'-Di- and Triphosphates.
Biochemistry, 47, 2008
2O5W
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BU of 2o5w by Molmil
Structure of the E. coli dihydroneopterin triphosphate pyrophosphohydrolase in complex with Sm+3 and pyrophosphate
Descriptor: PYROPHOSPHATE, SAMARIUM (III) ION, SODIUM ION, ...
Authors:Gabelli, S.B, Bianchet, M.A, Amzel, L.M.
Deposit date:2006-12-06
Release date:2007-08-28
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure and function of the E. coli dihydroneopterin triphosphate pyrophosphatase: a Nudix enzyme involved in folate biosynthesis.
Structure, 15, 2007
2PNY
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BU of 2pny by Molmil
Structure of Human Isopentenyl-diphosphate Delta-isomerase 2
Descriptor: CALCIUM ION, GLYCEROL, Isopentenyl-diphosphate Delta-isomerase 2, ...
Authors:Walker, J.R, Davis, T, Butler-Cole, C, Weigelt, J, Sundstrom, M, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2007-04-25
Release date:2007-05-29
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Structure of the human Isopentenyl-diphosphate Delta-isomerase 2.
To be Published
2PQV
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BU of 2pqv by Molmil
Crystal structure of MutT/nudix family protein from Streptococcus pneumoniae
Descriptor: MutT/nudix family protein, PHOSPHATE ION
Authors:Chang, C, Binkowski, T.A, Zhou, M, Abdullah, J, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2007-05-02
Release date:2007-06-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Crystal structure of MutT/nudix family protein from Streptococcus pneumoniae.
To be Published
2Q9P
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BU of 2q9p by Molmil
Human diphosphoinositol polyphosphate phosphohydrolase 1, Mg-F complex
Descriptor: CHLORIDE ION, Diphosphoinositol polyphosphate phosphohydrolase 1, FLUORIDE ION, ...
Authors:Thorsell, A.G, Busam, R, Arrowsmith, C.H, Berglund, H, Collins, R, Dahlgren, L.G, Edwards, A, Flodin, S, Flores, A, Graslund, S, Hammarstrom, M, Holmberg-Schiavone, L, Johansson, I, Kallas, A, Karlberg, T, Kotenyova, T, Lehtio, L, Moche, M, Nordlund, P, Nyman, T, Ogg, D, Sagemark, J, Sundstrom, M, Van den Berg, S, Weigelt, J, Welin, M, Persson, C, Hallberg, B.M, Structural Genomics Consortium (SGC)
Deposit date:2007-06-13
Release date:2007-09-11
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of human diphosphoinositol phosphatase 1.
Proteins, 77, 2009
2RRK
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BU of 2rrk by Molmil
Solution structure of the E. coli ORF135 protein
Descriptor: CTP pyrophosphohydrolase
Authors:Kawasaki, K, Mishima, M.
Deposit date:2011-01-01
Release date:2012-01-18
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structure of the E. coli ORF135 protein
To be Published

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