Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4UP0
DownloadVisualize
BU of 4up0 by Molmil
Ternary crystal structure of the Pygo2 PHD finger in complex with the B9L HD1 domain and a H3K4me2 peptide
Descriptor: HISTONE H3.1, PYGOPUS HOMOLOG 2, B-CELL CLL/LYMPHOMA 9-LIKE PROTEIN, ...
Authors:Miller, T.C.R, Fiedler, M, Rutherford, T.J, Birchall, K, Chugh, J, Bienz, M.
Deposit date:2014-06-11
Release date:2014-11-05
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:Competitive Binding of a Benzimidazole to the Histone-Binding Pocket of the Pygo Phd Finger.
Acs Chem.Biol., 9, 2014
4UP5
DownloadVisualize
BU of 4up5 by Molmil
Crystal structure of the Pygo2 PHD finger in complex with the B9L HD1 domain and a chemical fragment
Descriptor: 6-methoxy-1,3-benzothiazol-2-amine, PYGOPUS HOMOLOG 2, B-CELL CLL/LYMPHOMA 9-LIKE PROTEIN, ...
Authors:Miller, T.C.R, Fiedler, M, Rutherford, T.J, Birchall, K, Chugh, J, Bienz, M.
Deposit date:2014-06-12
Release date:2014-11-05
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Competitive Binding of a Benzimidazole to the Histone-Binding Pocket of the Pygo Phd Finger.
Acs Chem.Biol., 9, 2014
1WEP
DownloadVisualize
BU of 1wep by Molmil
Solution structure of PHD domain in PHF8
Descriptor: PHF8, ZINC ION
Authors:He, F, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Muto, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-25
Release date:2004-11-25
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution structure of PHD domain in protein AA017385
To be Published
1WEM
DownloadVisualize
BU of 1wem by Molmil
Solution structure of PHD domain in death inducer-obliterator 1(DIO-1)
Descriptor: Death associated transcription factor 1, ZINC ION
Authors:He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-25
Release date:2004-11-25
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution structure of PHD domain in death inducer-obliterator 1(DIO-1)
To be Published
1WE9
DownloadVisualize
BU of 1we9 by Molmil
Solution structure of PHD domain in nucleic acid binding protein-like NP_197993
Descriptor: PHD finger family protein, ZINC ION
Authors:He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-24
Release date:2004-11-24
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution structure of PHD domain in nucleic acid binding protein-like NP_197993
To be Published
1WEV
DownloadVisualize
BU of 1wev by Molmil
Solution structure of PHD domain in protein NP_082203
Descriptor: RIKEN cDNA 1110020M19, ZINC ION
Authors:He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-25
Release date:2004-11-25
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution structure of PHD domain in protein NP_082203
To be Published
1WEE
DownloadVisualize
BU of 1wee by Molmil
Solution structure of PHD domain in PHD finger family protein
Descriptor: PHD finger family protein, ZINC ION
Authors:He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-24
Release date:2004-11-24
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution structure of PHD domain in PHD finger family protein
To be Published
1XWH
DownloadVisualize
BU of 1xwh by Molmil
NMR structure of the first phd finger of autoimmune regulator protein (AIRE1): insights into apeced
Descriptor: Autoimmune regulator, ZINC ION
Authors:Bottomley, M.J, Stier, G, Krasotkina, J, Legube, G, Simon, B, Akhtar, A, Sattler, M, Musco, G.
Deposit date:2004-11-01
Release date:2005-01-25
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:NMR structure of the first PHD finger of autoimmune regulator protein (AIRE1). Insights into autoimmune polyendocrinopathy-candidiasis-ectodermal dystrophy (APECED) disease
J.Biol.Chem., 280, 2005
3LQJ
DownloadVisualize
BU of 3lqj by Molmil
Crystal structure of MLL1 PHD3-Bromo complexed with H3(1-9)K4me3 peptide
Descriptor: Histone H3, MLL1 PHD3-Bromo, ZINC ION
Authors:Wang, Z, Patel, D.J.
Deposit date:2010-02-09
Release date:2010-07-07
Last modified:2017-07-26
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Pro isomerization in MLL1 PHD3-bromo cassette connects H3K4me readout to CyP33 and HDAC-mediated repression.
Cell(Cambridge,Mass.), 141, 2010
3LQI
DownloadVisualize
BU of 3lqi by Molmil
Crystal structure of MLL1 PHD3-Bromo complexed with H3(1-9)K4me2 peptide
Descriptor: Histone H3, MLL1 PHD3-Bromo, ZINC ION
Authors:Wang, Z, Patel, D.J.
Deposit date:2010-02-09
Release date:2010-07-07
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Pro isomerization in MLL1 PHD3-bromo cassette connects H3K4me readout to CyP33 and HDAC-mediated repression.
Cell(Cambridge,Mass.), 141, 2010
5B76
DownloadVisualize
BU of 5b76 by Molmil
Crystal structure of MOZ double PHD finger domain in complex with histone H3 crotonylation at K14
Descriptor: Histone H3, Histone acetyltransferase KAT6A, SULFATE ION, ...
Authors:Li, H, Xiong, X.
Deposit date:2016-06-05
Release date:2016-10-26
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.653 Å)
Cite:Selective recognition of histone crotonylation by double PHD fingers of MOZ and DPF2
Nat.Chem.Biol., 12, 2016
5B77
DownloadVisualize
BU of 5b77 by Molmil
Crystal structrue of MOZ double PHD finger in complex with histone H3 propionylation at K14
Descriptor: Histone H3, Histone acetyltransferase KAT6A, SULFATE ION, ...
Authors:Li, H, Xiong, X.
Deposit date:2016-06-05
Release date:2016-10-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.551 Å)
Cite:Selective recognition of histone crotonylation by double PHD fingers of MOZ and DPF2
Nat.Chem.Biol., 12, 2016
5B78
DownloadVisualize
BU of 5b78 by Molmil
Crystal structure of MOZ double PHD finger mutant-S210D/N235R in complex with histone H3 crotonylation at K14
Descriptor: Histone H3, Histone acetyltransferase KAT6A, ZINC ION
Authors:Li, H, Xiong, X.
Deposit date:2016-06-05
Release date:2016-10-26
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Selective recognition of histone crotonylation by double PHD fingers of MOZ and DPF2
Nat.Chem.Biol., 12, 2016
5B75
DownloadVisualize
BU of 5b75 by Molmil
Crystal structure of MOZ double PHD finger in complex with histone H3 butyrylation at K14
Descriptor: Histone H3, Histone acetyltransferase KAT6A, SULFATE ION, ...
Authors:Li, H, Xiong, X.
Deposit date:2016-06-05
Release date:2016-10-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.704 Å)
Cite:Selective recognition of histone crotonylation by double PHD fingers of MOZ and DPF2
Nat.Chem.Biol., 12, 2016
5B79
DownloadVisualize
BU of 5b79 by Molmil
Crystal structure of DPF2 double PHD finger
Descriptor: ZINC ION, Zinc finger protein ubi-d4
Authors:Li, H, Xiong, X.
Deposit date:2016-06-05
Release date:2016-10-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.601 Å)
Cite:Selective recognition of histone crotonylation by double PHD fingers of MOZ and DPF2
Nat.Chem.Biol., 12, 2016
6IIW
DownloadVisualize
BU of 6iiw by Molmil
Crystal structure of human UHRF1 PHD finger in complex with PAF15
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, E3 ubiquitin-protein ligase UHRF1, PCNA-associated factor, ...
Authors:Arita, K, Kori, S.
Deposit date:2018-10-07
Release date:2019-10-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.699 Å)
Cite:Two distinct modes of DNMT1 recruitment ensure stable maintenance DNA methylation.
Nat Commun, 11, 2020
5C13
DownloadVisualize
BU of 5c13 by Molmil
Crystal Structure of TAF3 PHD finger bound to histone H3C4me3 peptide
Descriptor: H3 peptide, Transcription initiation factor TFIID subunit 3, ZINC ION
Authors:Li, H, Huang, J.
Deposit date:2015-06-12
Release date:2015-11-25
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.101 Å)
Cite:Crystal Structure of Jarid1a PHD finger bound to histone H3C4me3 peptide
Nat Commun, 2015
6J2P
DownloadVisualize
BU of 6j2p by Molmil
Crystal structure of Saccharomyces cerevisiae Spp1 in complex with H3K4me3
Descriptor: COMPASS component SPP1, Histone H3, ZINC ION
Authors:He, C, Li, F.
Deposit date:2019-01-02
Release date:2019-09-11
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structural basis for histone H3K4me3 recognition by the N-terminal domain of the PHD finger protein Spp1.
Biochem.J., 476, 2019
6FAP
DownloadVisualize
BU of 6fap by Molmil
Crystal structure of human BAZ2A PHD zinc finger in complex with Fr23
Descriptor: Bromodomain adjacent to zinc finger domain protein 2A, GLYCEROL, PHOSPHATE ION, ...
Authors:Amato, A, Lucas, X, Bortoluzzi, A, Wright, D, Ciulli, A.
Deposit date:2017-12-16
Release date:2018-03-21
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Targeting Ligandable Pockets on Plant Homeodomain (PHD) Zinc Finger Domains by a Fragment-Based Approach.
ACS Chem. Biol., 13, 2018
6FKP
DownloadVisualize
BU of 6fkp by Molmil
Crystal structure of BAZ2A PHD zinc finger in complex with H3 10-mer AA mutant peptide
Descriptor: ALA-ARG-THR-ALA-ALA-THR-ALA-ARG, Bromodomain adjacent to zinc finger domain protein 2A, GLYCEROL, ...
Authors:Amato, A, Lucas, X, Bortoluzzi, A, Wright, D, Ciulli, A.
Deposit date:2018-01-24
Release date:2018-03-21
Last modified:2018-05-02
Method:X-RAY DIFFRACTION (2 Å)
Cite:Targeting Ligandable Pockets on Plant Homeodomain (PHD) Zinc Finger Domains by a Fragment-Based Approach.
ACS Chem. Biol., 13, 2018
6FI0
DownloadVisualize
BU of 6fi0 by Molmil
Crystal structure of BAZ2A PHD zinc finger in complex with Fr 19
Descriptor: 2-azanyl-1-(6,7-dihydro-4~{H}-thieno[3,2-c]pyridin-5-yl)ethanone, Bromodomain adjacent to zinc finger domain protein 2A, GLYCEROL, ...
Authors:Amato, A, Lucas, X, Bortoluzzi, A, Wright, D, Ciulli, A.
Deposit date:2018-01-16
Release date:2018-03-21
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Targeting Ligandable Pockets on Plant Homeodomain (PHD) Zinc Finger Domains by a Fragment-Based Approach.
ACS Chem. Biol., 13, 2018
6FHQ
DownloadVisualize
BU of 6fhq by Molmil
Crystal structure of human BAZ2B PHD zinc finger in complex with Fr 21
Descriptor: 2-azanyl-~{N}-(1,3-thiazol-2-yl)ethanamide, Bromodomain adjacent to zinc finger domain protein 2B, ZINC ION
Authors:Amato, A, Lucas, X, Bortoluzzi, A, Wright, D, Ciulli, A.
Deposit date:2018-01-15
Release date:2018-03-21
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Targeting Ligandable Pockets on Plant Homeodomain (PHD) Zinc Finger Domains by a Fragment-Based Approach.
ACS Chem. Biol., 13, 2018
6FHU
DownloadVisualize
BU of 6fhu by Molmil
Crystal structure of BAZ2A PHD zinc finger in complex with H3 3-mer peptide
Descriptor: ALA-ARG-TAM, Bromodomain adjacent to zinc finger domain protein 2A, GLYCEROL, ...
Authors:Amato, A, Lucas, X, Bortoluzzi, A, Wright, D, Ciulli, A.
Deposit date:2018-01-15
Release date:2018-03-21
Last modified:2018-05-02
Method:X-RAY DIFFRACTION (2 Å)
Cite:Targeting Ligandable Pockets on Plant Homeodomain (PHD) Zinc Finger Domains by a Fragment-Based Approach.
ACS Chem. Biol., 13, 2018
6FI1
DownloadVisualize
BU of 6fi1 by Molmil
Crystal structure of human BAZ2B PHD zinc finger in complex with Fr23
Descriptor: Bromodomain adjacent to zinc finger domain protein 2B, ZINC ION, ~{N}-(4-aminophenyl)-2-azanyl-ethanamide
Authors:Amato, A, Lucas, X, Bortoluzzi, A, Wright, D, Ciulli, A.
Deposit date:2018-01-16
Release date:2018-03-21
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Targeting Ligandable Pockets on Plant Homeodomain (PHD) Zinc Finger Domains by a Fragment-Based Approach.
ACS Chem. Biol., 13, 2018
6LSB
DownloadVisualize
BU of 6lsb by Molmil
Crystal Structure of DPF domain of MOZ in complex with H3K14bz peptide
Descriptor: Histone H3, Histone acetyltransferase KAT6A, ZINC ION
Authors:Li, H.T, Ren, X.L.
Deposit date:2020-01-17
Release date:2020-11-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Histone benzoylation serves as an epigenetic mark for DPF and YEATS family proteins.
Nucleic Acids Res., 49, 2021

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon