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8EUE
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BU of 8eue by Molmil
Class1 of the INO80-Nucleosome complex
Descriptor: DNA (147-MER), Histone H2A type 1, Histone H2B 1.1, ...
Authors:Wu, H, Munoz, E, Gourdet, M, Narlikar, G, Cheng, Y.F.
Deposit date:2022-10-18
Release date:2023-07-12
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (3.48 Å)
Cite:Reorientation of INO80 on hexasomes reveals basis for mechanistic versatility.
Science, 381, 2023
8ETT
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BU of 8ett by Molmil
Class1 of the INO80-Hexasome complex
Descriptor: DNA (110-MER), Histone H2A type 1, Histone H2B 1.1, ...
Authors:Wu, H, Munoz, E, Gourdet, M, Cheng, Y.F, Narlikar, G.
Deposit date:2022-10-17
Release date:2023-07-12
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (6.68 Å)
Cite:Reorientation of INO80 on hexasomes reveals basis for mechanistic versatility.
Science, 381, 2023
8EU2
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BU of 8eu2 by Molmil
Class3 of the INO80-Hexasome complex
Descriptor: DNA (110-MER), Histone H2A type 1, Histone H2B 1.1, ...
Authors:Wu, H, Munoz, E, Gourdet, M, Cheng, Y.F, Narlikar, G.
Deposit date:2022-10-18
Release date:2023-07-12
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (2.93 Å)
Cite:Reorientation of INO80 on hexasomes reveals basis for mechanistic versatility.
Science, 381, 2023
8ETV
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BU of 8etv by Molmil
Class2 of the INO80-Hexasome complex
Descriptor: DNA (110-MER), Histone H2A type 1, Histone H2B 1.1, ...
Authors:Wu, H, Munoz, E, Gourdet, M, Cheng, Y.F, Narlikar, G.
Deposit date:2022-10-17
Release date:2023-07-12
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (3.16 Å)
Cite:Reorientation of INO80 on hexasomes reveals basis for mechanistic versatility.
Science, 381, 2023
8F0X
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BU of 8f0x by Molmil
Cryo-EM structure of Kap114 bound to H2A-H2B
Descriptor: Histone H2A.2, Histone H2B.2, Importin subunit beta-5
Authors:Jiou, J, Chook, Y.M.
Deposit date:2022-11-04
Release date:2023-07-26
Method:ELECTRON MICROSCOPY (3.21 Å)
Cite:Mechanism of RanGTP priming H2A-H2B release from Kap114 in an atypical RanGTP•Kap114•H2A-H2B complex.
Proc.Natl.Acad.Sci.USA, 120, 2023
8EVJ
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BU of 8evj by Molmil
CX3CR1 nucleosome bound PU.1 and C/EBPa
Descriptor: DNA (167-MER), Histone H2A type 2-C, Histone H2B type 2-E, ...
Authors:Guan, R, Bai, Y, Lian, T.
Deposit date:2022-10-20
Release date:2023-11-01
Last modified:2024-02-07
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structural mechanism of synergistic targeting of the CX3CR1 nucleosome by PU.1 and C/EBP alpha.
Nat.Struct.Mol.Biol., 2024
8EVG
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BU of 8evg by Molmil
162bp CX3CR1 nucleosome (further classified with better nucleosome end)
Descriptor: DNA (162-MER), Histone H2A type 2-C, Histone H2B type 2-E, ...
Authors:Tengfei, L, Ruifang, G, Yawen, B.
Deposit date:2022-10-20
Release date:2023-11-01
Method:ELECTRON MICROSCOPY (2.75 Å)
Cite:Structural basis of cooperative targeting of the CX3CR1 nucleosome
To Be Published
8EVH
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BU of 8evh by Molmil
CX3CR1 nucleosome and wild type PU.1 complex
Descriptor: DNA (162-MER), Histone H2A type 2-C, Histone H2B type 2-E, ...
Authors:Lian, T, Guan, R, Bai, Y.
Deposit date:2022-10-20
Release date:2023-11-01
Last modified:2024-02-07
Method:ELECTRON MICROSCOPY (2.85 Å)
Cite:Structural mechanism of synergistic targeting of the CX3CR1 nucleosome by PU.1 and C/EBP alpha.
Nat.Struct.Mol.Biol., 2024
8EVI
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BU of 8evi by Molmil
CX3CR1 nucleosome and PU.1 complex containing disulfide bond mutations
Descriptor: DNA (167-MER), Histone H2A type 2-C, Histone H2B type 2-E, ...
Authors:Lian, T, Guan, R, Bai, Y.
Deposit date:2022-10-20
Release date:2023-11-01
Last modified:2024-02-07
Method:ELECTRON MICROSCOPY (2.64 Å)
Cite:Structural mechanism of synergistic targeting of the CX3CR1 nucleosome by PU.1 and C/EBP alpha.
Nat.Struct.Mol.Biol., 2024
8G86
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BU of 8g86 by Molmil
Human Oct4 bound to nucleosome with human nMatn1 sequence (focused refinement of nucleosome)
Descriptor: Histone H2A, Histone H2B, Histone H3, ...
Authors:Sinha, K.K, Bilokapic, S, Du, Y, Malik, D, Halic, M.
Deposit date:2023-02-17
Release date:2023-03-22
Last modified:2023-07-26
Method:ELECTRON MICROSCOPY (2.3 Å)
Cite:Histone modifications regulate pioneer transcription factor cooperativity.
Nature, 619, 2023
8G57
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BU of 8g57 by Molmil
Structure of nucleosome-bound Sirtuin 6 deacetylase
Descriptor: DNA strand 1, DNA strand 2, Histone H2A type 1-B/E, ...
Authors:Chio, U.S, Rechiche, O, Bryll, A.R, Zhu, J, Feldman, J.L, Peterson, C.L, Tan, S, Armache, J.-P.
Deposit date:2023-02-11
Release date:2023-04-26
Method:ELECTRON MICROSCOPY (3.07 Å)
Cite:Cryo-EM structure of the human Sirtuin 6-nucleosome complex.
Sci Adv, 9, 2023
8G6H
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BU of 8g6h by Molmil
H2BK120ub+H3K79me2-modified nucleosome ubiquitin position 6
Descriptor: 601 DNA (185-MER), Histone H2A, Histone H2B 1.1, ...
Authors:Hicks, C.W, Wolberger, C.
Deposit date:2023-02-15
Release date:2024-02-21
Method:ELECTRON MICROSCOPY (3.06 Å)
Cite:Ubiquitinated H2B as gatekeeper of the nucleosome acidic patch
To Be Published
8G6S
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BU of 8g6s by Molmil
H2AK119ub-modified nucleosome ubiquitin position 2
Descriptor: 601 DNA (145-MER), Histone H2A, Histone H2B 1.1, ...
Authors:Hicks, C.W, Wolberger, C.
Deposit date:2023-02-15
Release date:2024-02-21
Method:ELECTRON MICROSCOPY (3.47 Å)
Cite:Ubiquitinated H2B as gatekeeper of the nucleosome acidic patch
To Be Published
8G6G
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BU of 8g6g by Molmil
H2BK120ub+H3K79me2-modified nucleosome ubiquitin position 5
Descriptor: 601 DNA (185-MER), Histone H2A, Histone H2B 1.1, ...
Authors:Hicks, C.W, Wolberger, C.
Deposit date:2023-02-15
Release date:2024-02-21
Method:ELECTRON MICROSCOPY (2.93 Å)
Cite:Ubiquitinated H2B as gatekeeper of the nucleosome acidic patch
To Be Published
8G6Q
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BU of 8g6q by Molmil
H2AK119ub-modified nucleosome ubiquitin position 1
Descriptor: 601 DNA (145-MER), Histone H2A, Histone H2B 1.1, ...
Authors:Hicks, C.W, Wolberger, C.
Deposit date:2023-02-15
Release date:2024-02-21
Method:ELECTRON MICROSCOPY (3.41 Å)
Cite:Ubiquitinated H2B as gatekeeper of the nucleosome acidic patch
To Be Published
8HE5
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BU of 8he5 by Molmil
RNA polymerase II elongation complex bound with Rad26 and Elf1, stalled at SHL(-3.5) of the nucleosome
Descriptor: DNA (198-MER), DNA repair protein, DNA-directed RNA polymerase subunit, ...
Authors:Osumi, K, Kujirai, T, Ehara, H, Kinoshita, C, Saotome, M, Kagawa, W, Sekine, S, Takizawa, Y, Kurumizaka, H.
Deposit date:2022-11-07
Release date:2023-07-05
Method:ELECTRON MICROSCOPY (6.95 Å)
Cite:Structural Basis of Damaged Nucleotide Recognition by Transcribing RNA Polymerase II in the Nucleosome.
J.Mol.Biol., 435, 2023
8H0V
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BU of 8h0v by Molmil
RNA polymerase II transcribing a chromatosome (type I)
Descriptor: DNA (261-MER), DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ...
Authors:Hirano, R, Ehara, H, Tomoya, K, Takizawa, Y, Sekine, S, Kurumizaka, H.
Deposit date:2022-09-30
Release date:2022-12-07
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural basis of RNA polymerase II transcription on the chromatosome containing linker histone H1.
Nat Commun, 13, 2022
8H0W
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BU of 8h0w by Molmil
RNA polymerase II transcribing a chromatosome (type II)
Descriptor: DNA (261-MER), DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ...
Authors:Hirano, R, Ehara, H, Tomoya, K, Takizawa, Y, Sekine, S, Kurumizaka, H.
Deposit date:2022-09-30
Release date:2022-12-07
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Structural basis of RNA polymerase II transcription on the chromatosome containing linker histone H1.
Nat Commun, 13, 2022
8H1T
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BU of 8h1t by Molmil
Cryo-EM structure of BAP1-ASXL1 bound to chromatosome
Descriptor: DNA (187-MER), Histone H1.4, Histone H2A type 1-D, ...
Authors:Ge, W, Yu, C, Xu, R.M.
Deposit date:2022-10-04
Release date:2023-02-01
Last modified:2023-04-19
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Basis of the H2AK119 specificity of the Polycomb repressive deubiquitinase.
Nature, 616, 2023
7PEU
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BU of 7peu by Molmil
Trinucleosome of the 4x177 nucleosome array containing H1
Descriptor: DNA (522-MER), Histone H1.4, Histone H2A type 1-B/E, ...
Authors:Dombrowski, M, Cramer, P.
Deposit date:2021-08-11
Release date:2022-08-03
Method:ELECTRON MICROSCOPY (7.2 Å)
Cite:Histone H1 binding to nucleosome arrays depends on linker DNA length and trajectory.
Nat.Struct.Mol.Biol., 29, 2022
7PF0
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BU of 7pf0 by Molmil
Trinucleosome of the 4x177 nucleosome array containing H1
Descriptor: DNA (563-MER), Histone H1.4, Histone H2A type 1-B/E, ...
Authors:Dombrowski, M, Cramer, P.
Deposit date:2021-08-11
Release date:2022-08-03
Method:ELECTRON MICROSCOPY (11 Å)
Cite:Histone H1 binding to nucleosome arrays depends on linker DNA length and trajectory.
Nat.Struct.Mol.Biol., 29, 2022
7PFX
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BU of 7pfx by Molmil
Nucleosome 3 of the 4x207 nucleosome array containing H1
Descriptor: DNA (177-MER), Histone H1.4, Histone H2A type 1-B/E, ...
Authors:Dombrowski, M, Cramer, P.
Deposit date:2021-08-12
Release date:2022-08-03
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Histone H1 binding to nucleosome arrays depends on linker DNA length and trajectory.
Nat.Struct.Mol.Biol., 29, 2022
7PEX
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BU of 7pex by Molmil
Nucleosome 2 of the 4x177 nucleosome array containing H1
Descriptor: DNA (177-MER), Histone H1.4, Histone H2A type 1-B/E, ...
Authors:Dombrowski, M, Cramer, P.
Deposit date:2021-08-11
Release date:2022-08-03
Method:ELECTRON MICROSCOPY (5.1 Å)
Cite:Histone H1 binding to nucleosome arrays depends on linker DNA length and trajectory.
Nat.Struct.Mol.Biol., 29, 2022
7PFD
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BU of 7pfd by Molmil
Nucleosome 1 of the 4x197 nucleosome array containing H1
Descriptor: DNA (172-MER), Histone H1.4, Histone H2A type 1-B/E, ...
Authors:Dombrowski, M, Cramer, P.
Deposit date:2021-08-11
Release date:2022-08-03
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Histone H1 binding to nucleosome arrays depends on linker DNA length and trajectory.
Nat.Struct.Mol.Biol., 29, 2022
7PF4
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BU of 7pf4 by Molmil
Nucleosome 3 of the 4x187 nucleosome array containing H1
Descriptor: DNA (167-MER), Histone H2A type 1-B/E, Histone H2B type 1-K, ...
Authors:Dombrowski, M, Cramer, P.
Deposit date:2021-08-11
Release date:2022-08-03
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Histone H1 binding to nucleosome arrays depends on linker DNA length and trajectory.
Nat.Struct.Mol.Biol., 29, 2022

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PDB entries from 2024-04-17

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