Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7DBO
DownloadVisualize
BU of 7dbo by Molmil
DPBB domain of VCP-like ATPase from Thermoplasma acidophilum
Descriptor: SULFATE ION, VCP-like ATPase
Authors:Yagi, S, Tagami, S.
Deposit date:2020-10-21
Release date:2021-09-29
Last modified:2021-11-17
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.
J.Am.Chem.Soc., 143, 2021
7DG7
DownloadVisualize
BU of 7dg7 by Molmil
DPBB domain of VCP-like ATPase from Methanopyrus kandleri
Descriptor: ATPase of the AAA+ class, IMIDAZOLE, ZINC ION
Authors:Yagi, S, Tagami, S.
Deposit date:2020-11-11
Release date:2021-09-29
Last modified:2021-11-17
Method:X-RAY DIFFRACTION (1.604 Å)
Cite:Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.
J.Am.Chem.Soc., 143, 2021
7DG9
DownloadVisualize
BU of 7dg9 by Molmil
DPBB domain of VCP-like ATPase from Aeropyrum pernix
Descriptor: Cell division control protein 48, AAA family, ZINC ION
Authors:Yagi, S, Tagami, S.
Deposit date:2020-11-11
Release date:2021-09-29
Last modified:2021-11-17
Method:X-RAY DIFFRACTION (1.602 Å)
Cite:Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.
J.Am.Chem.Soc., 143, 2021
4RV0
DownloadVisualize
BU of 4rv0 by Molmil
Crystal structure of TN complex
Descriptor: Nuclear protein localization protein 4 homolog, SULFATE ION, Transitional endoplasmic reticulum ATPase TER94
Authors:Hao, Q, Jiao, S, Shi, Z.B, Zhou, Z.C.
Deposit date:2014-11-23
Release date:2015-11-25
Method:X-RAY DIFFRACTION (1.998 Å)
Cite:Crystal structure of TN complex
To be Published
3TIW
DownloadVisualize
BU of 3tiw by Molmil
Crystal structure of p97N in complex with the C-terminus of gp78
Descriptor: CHLORIDE ION, E3 ubiquitin-protein ligase AMFR, Transitional endoplasmic reticulum ATPase
Authors:Haenzelmann, P, Schindelin, H.
Deposit date:2011-08-22
Release date:2011-09-14
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.802 Å)
Cite:The Structural and Functional Basis of the p97/Valosin-containing Protein (VCP)-interacting Motif (VIM): MUTUALLY EXCLUSIVE BINDING OF COFACTORS TO THE N-TERMINAL DOMAIN OF p97.
J.Biol.Chem., 286, 2011
2PJH
DownloadVisualize
BU of 2pjh by Molmil
Strctural Model of the p97 N domain- npl4 UBD complex
Descriptor: Nuclear protein localization protein 4 homolog, Transitional endoplasmic reticulum ATPase
Authors:Isaacson, R, Pye, V.E, Simpson, S, Meyer, H.H, Zhang, X, Freemont, P.
Deposit date:2007-04-16
Release date:2007-05-08
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Detailed structural insights into the p97-Npl4-Ufd1 interface.
J.Biol.Chem., 282, 2007
1CZ5
DownloadVisualize
BU of 1cz5 by Molmil
NMR STRUCTURE OF VAT-N: THE N-TERMINAL DOMAIN OF VAT (VCP-LIKE ATPASE OF THERMOPLASMA)
Descriptor: VCP-LIKE ATPASE
Authors:Coles, M, Diercks, T, Liermann, J, Groeger, A, Rockel, B, Baumeister, W, Koretke, K, Lupas, A, Peters, J, Kessler, H.
Deposit date:1999-09-01
Release date:1999-10-12
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:The solution structure of VAT-N reveals a 'missing link' in the evolution of complex enzymes from a simple betaalphabetabeta element.
Curr.Biol., 9, 1999
1CZ4
DownloadVisualize
BU of 1cz4 by Molmil
NMR STRUCTURE OF VAT-N: THE N-TERMINAL DOMAIN OF VAT (VCP-LIKE ATPASE OF THERMOPLASMA)
Descriptor: VCP-LIKE ATPASE
Authors:Coles, M, Diercks, T, Liermann, J, Groeger, A, Rockel, B, Baumeister, W, Koretke, K, Lupas, A, Peters, J, Kessler, H.
Deposit date:1999-09-01
Release date:1999-10-12
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:The solution structure of VAT-N reveals a 'missing link' in the evolution of complex enzymes from a simple betaalphabetabeta element.
Curr.Biol., 9, 1999
1QCS
DownloadVisualize
BU of 1qcs by Molmil
N-TERMINAL DOMAIN OF N-ETHYLMALEIMIDE SENSITIVE FACTOR (NSF)
Descriptor: N-ETHYLMALEIMIDE SENSITIVE FACTOR (NSF-N), SULFATE ION
Authors:Yu, R.C, Jahn, R, Brunger, A.T.
Deposit date:1999-05-14
Release date:1999-05-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:NSF N-terminal domain crystal structure: models of NSF function.
Mol.Cell, 4, 1999
1QDN
DownloadVisualize
BU of 1qdn by Molmil
AMINO TERMINAL DOMAIN OF THE N-ETHYLMALEIMIDE SENSITIVE FUSION PROTEIN (NSF)
Descriptor: BETA-MERCAPTOETHANOL, PROTEIN (N-ETHYLMALEIMIDE SENSITIVE FUSION PROTEIN (NSF)), SULFATE ION
Authors:May, A.P, Misura, K.M.S, Whiteheart, S.W, Weis, W.I.
Deposit date:1999-05-21
Release date:1999-06-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the amino-terminal domain of N-ethylmaleimide-sensitive fusion protein.
Nat.Cell Biol., 1, 1999
3QQ7
DownloadVisualize
BU of 3qq7 by Molmil
Crystal Structure of the p97 N-terminal domain
Descriptor: CHLORIDE ION, COBALT (II) ION, GLYCEROL, ...
Authors:Haenzelmann, P, Schindelin, H.
Deposit date:2011-02-15
Release date:2011-06-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Hierarchical Binding of Cofactors to the AAA ATPase p97.
Structure, 19, 2011
4KDL
DownloadVisualize
BU of 4kdl by Molmil
Crystal structure of p97/VCP N in complex with OTU1 UBXL
Descriptor: Transitional endoplasmic reticulum ATPase, Ubiquitin thioesterase OTU1
Authors:Kim, S.J, Kim, E.E.
Deposit date:2013-04-25
Release date:2014-03-19
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Structural Basis for Ovarian Tumor Domain-containing Protein 1 (OTU1) Binding to p97/Valosin-containing Protein (VCP).
J.Biol.Chem., 289, 2014
4KDI
DownloadVisualize
BU of 4kdi by Molmil
Crystal structure of p97/VCP N in complex with OTU1 UBXL
Descriptor: Transitional endoplasmic reticulum ATPase, Ubiquitin thioesterase OTU1
Authors:Kim, S.J, Kim, E.E.
Deposit date:2013-04-25
Release date:2014-03-19
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Structural Basis for Ovarian Tumor Domain-containing Protein 1 (OTU1) Binding to p97/Valosin-containing Protein (VCP).
J.Biol.Chem., 289, 2014
5GLF
DownloadVisualize
BU of 5glf by Molmil
Structural insights into the interaction of p97 N-terminal domain and SHP motif in Derlin-1 rhomboid pseudoprotease
Descriptor: Derlin-1, Transitional endoplasmic reticulum ATPase
Authors:Lim, J.J, Lee, Y, Yoon, S.Y, Ly, T.T, Kang, J.Y, Youn, H.-S, An, J.Y, Lee, J.-G, Park, K.R, Kim, T.G, Yang, J.K, Jun, Y, Eom, S.H.
Deposit date:2016-07-11
Release date:2016-11-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural insights into the interaction of human p97 N-terminal domain and SHP motif in Derlin-1 rhomboid pseudoprotease.
FEBS Lett., 590, 2016
5B6C
DownloadVisualize
BU of 5b6c by Molmil
Structural Details of Ufd1 binding to p97
Descriptor: Peptide from Ubiquitin fusion degradation protein 1 homolog, Transitional endoplasmic reticulum ATPase
Authors:Le, L.T.M, Yang, J.K.
Deposit date:2016-05-26
Release date:2017-01-04
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural Details of Ufd1 Binding to p97 and Their Functional Implications in ER-Associated Degradation
PLoS ONE, 11, 2016
5EPP
DownloadVisualize
BU of 5epp by Molmil
Structural Insights into the Interaction of p97 N-terminus Domain and VBM Motif in Rhomboid Protease, RHBDL4
Descriptor: Rhomboid-related protein 4, Transitional endoplasmic reticulum ATPase
Authors:Lim, J.J, Lee, Y, Ly, T.T, Kang, J.Y, Lee, J.-G, An, J.Y, Youn, H.-S, Park, K.R, Kim, T.G, Yang, J.K, Jun, Y, Eom, S.H.
Deposit date:2015-11-12
Release date:2016-09-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Structural insights into the interaction of p97 N-terminus domain and VBM in rhomboid protease, RHBDL4.
Biochem.J., 473, 2016
4KLN
DownloadVisualize
BU of 4kln by Molmil
Structure of p97 N-D1 A232E mutant in complex with ATPgS
Descriptor: MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, Transitional endoplasmic reticulum ATPase
Authors:Xia, D, Tang, W.K.
Deposit date:2013-05-07
Release date:2013-11-13
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:Altered Intersubunit Communication Is the Molecular Basis for Functional Defects of Pathogenic p97 Mutants.
J.Biol.Chem., 288, 2013
5X4L
DownloadVisualize
BU of 5x4l by Molmil
Crystal structure of the UBX domain of human UBXD7 in complex with p97 N domain
Descriptor: Transitional endoplasmic reticulum ATPase, UBX domain-containing protein 7
Authors:Jiang, T, Li, Z, Wang, Y, Xu, M.
Deposit date:2017-02-13
Release date:2017-03-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.402 Å)
Cite:Crystal structures of the UBX domain of human UBXD7 and its complex with p97 ATPase
Biochem. Biophys. Res. Commun., 486, 2017
6CHS
DownloadVisualize
BU of 6chs by Molmil
Cdc48-Npl4 complex in the presence of ATP-gamma-S
Descriptor: MAGNESIUM ION, Npl4, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ...
Authors:Kim, K.H, Bodnar, N.O, Walz, T, Rapoport, T.A.
Deposit date:2018-02-22
Release date:2018-07-04
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Structure of the Cdc48 ATPase with its ubiquitin-binding cofactor Ufd1-Npl4.
Nat. Struct. Mol. Biol., 25, 2018
6OAB
DownloadVisualize
BU of 6oab by Molmil
Cdc48-Npl4 complex processing poly-ubiquitinated substrate in the presence of ADP-BeFx, state 2
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Cell division control protein 48, ...
Authors:Twomey, E.C, Ji, Z, Wales, T.E, Bodnar, N.O, Engen, J.R, Rapoport, T.A.
Deposit date:2019-03-15
Release date:2019-07-03
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Substrate processing by the Cdc48 ATPase complex is initiated by ubiquitin unfolding.
Science, 365, 2019
6OPC
DownloadVisualize
BU of 6opc by Molmil
Cdc48 Hexamer in a complex with substrate and Shp1(Ubx Domain)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Cell division control protein 48, ...
Authors:Cooney, I, Han, H, Stewart, M, Carson, R.H, Hansen, D, Price, J.C, Hill, C.P, Shen, P.S.
Deposit date:2019-04-24
Release date:2019-07-10
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structure of the Cdc48 segregase in the act of unfolding an authentic substrate.
Science, 365, 2019
5KIW
DownloadVisualize
BU of 5kiw by Molmil
p97 ND1-L198W in complex with VIMP
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Selenoprotein S, ...
Authors:Tang, W.K, Xia, D.
Deposit date:2016-06-17
Release date:2018-03-07
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.41 Å)
Cite:Structural basis for nucleotide-modulated p97 association with the ER membrane.
Cell Discov, 3, 2017
5KIY
DownloadVisualize
BU of 5kiy by Molmil
p97 ND1-A232E in complex with VIMP
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Selenoprotein S, ...
Authors:Tang, W.K, Xia, D.
Deposit date:2016-06-17
Release date:2017-12-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Structural basis for nucleotide-modulated p97 association with the ER membrane.
Cell Discov, 3, 2017
8HL7
DownloadVisualize
BU of 8hl7 by Molmil
Crystal structure of p97 N/D1 in complex with a valosin-containing protein methyltransferase
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ACETATE ION, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Kang, W, Yang, J.K.
Deposit date:2022-11-29
Release date:2023-07-12
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis for recognition and methylation of p97 by METTL21D, a valosin-containing protein lysine methyltransferase.
Iscience, 26, 2023
8HRZ
DownloadVisualize
BU of 8hrz by Molmil
Crystal structure of the p97-N/D1 hexamer in complex with six p47-UBX domains
Descriptor: ADENOSINE-5'-DIPHOSPHATE, NSFL1 cofactor p47, Transitional endoplasmic reticulum ATPase
Authors:Nguyen, T.Q, Kang, W.
Deposit date:2022-12-16
Release date:2023-12-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of the p97-N/D1 hexmaer in complex with six p47-UBX domains
To Be Published

217705

數據於2024-03-27公開中

PDB statisticsPDBj update infoContact PDBjnumon